Rh3AG289200

ALA-interacting subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0001483
Physical Location & Seq
Forward (+)
34614023 .. 34617461
3439 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG289200.1

Sequence Viewer

Length: 1137 bp
ATGATTCTTGTCTCTTTCTTTTTCCCTAACACCACTGTTGTATTGGTGATTTTCAATCATTACGAATGGAATGATTGGATCATTTTCTTGTGCTGTGGAAGCATTATTCTAAGAAAACTTATATGCATTGTCCATTTTTATATATATATTTCAGATTCCAGGTTCTCACAGCAAGAGCTTCCAGCTTGCAAACCAATTTTGTCACCGGGATGGGTGGTTTCAATATTCATCACCATTGGCATTGTCTTTATCCCAATTGGCTTTGCTGCCTTATTCGCCTCAGAGCGTGTTGTGGAACTACAATTCCAGTATGACCAAGATTGTGTTCCTGCAAAGTATAAGGATAATGCGGTTGCATATATTCAAAGCAATGCCACTGACAAGACCTGCACGAGGAAAATGCCTGCTGTTACAAGTAAAATGAAATCTCCCATTTATGTCTACTATCAGATTGATCACTACTTTCAGAATCATCGCCGATATGTTAAAAGTAGAAGTGATGATCAGTTGCGGAGCGTGGCAAAGGAAAATAGCACAAGCGACTGTGCGCCTGAACGCTTTGCAAAAAATGGTCAACCAATTGTTCCTTGTGGCCTCGTTGCATGGAGTTTGTTTAATGACACATATAAGTTTTCAGTGAAAAACAAAACAATAGCGGTCAGCAAAAAGGACATCACATGGAAAAGTGACCGTGAGAAAAAGTTTTCAAGCAGTGTCTATCCTAAGAACTTTCAGTCTGGGGGTTTGATTGGAGGAGCAAAGCTCAATTCTAGCATACCTCTGAGCCAACAAGAGGATCTTATTGTTTGGATGCGAACTGCAGCAATGCCATCTTTTAGAAAACTGTATGGGAGGATAGAAGTGGACCTTGATGCTCATGATGAAATAACAATAGAACTACAGAATAACTATAATACCTACAGCTTTAAAGGCAGCAAGTCAGTGATACTTTCTACTGCGAGTTGGATTGGTGGAAAGAATGATCTAATGGGCATAGCATACCTTACCATTGGCGGAATGTGTTTGTTCTTGGCAATATGCTTCATACTTATGTATGTGCTCAAGCCGAGACCTCTTGGGGATACCTCCTACTTGTCTTGGAATAGAAATGCATCAGGAGGACGCCTAAATTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CDC50

Protein Analysis

378

Amino Acids

42.99

Weight (kDa)

9.12

Isoelectric Point (pI)

44.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CDC50 PF03381 91 - 357 2.5e-85 LEM3 (ligand-effect modulator 3) family / CDC50 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 395
AccI GTMKAC 1 cut(s) 441
AciI CCGC 4 cut(s) 350, 511, 656, 1014
AclWI GGATC 2 cut(s) 86, 804
AcsI RAATTY 1 cut(s) 1129
AcyI GRCGYC 1 cut(s) 1123
AfiI CCNNNNNNNGG 2 cut(s) 393, 793
AgsI TTSAA 4 cut(s) 55, 222, 365, 708
AjnI CCWGG 1 cut(s) 158
AjuI GAANNNNNNNTTGG 2 cut(s) 309, 341
AloI GAACNNNNNNTCC 2 cut(s) 288, 320
AluBI AGCT 4 cut(s) 178, 185, 763, 924
AluI AGCT 4 cut(s) 178, 185, 763, 924
Alw21I GWGCWC 1 cut(s) 1062
Alw26I GTCTC 2 cut(s) 16, 1063
AlwI GGATC 2 cut(s) 86, 804
AoxI GGCC 1 cut(s) 592
ApeKI GCWGC 3 cut(s) 266, 821, 933
ApoI RAATTY 1 cut(s) 1129
AspLEI GCGC 1 cut(s) 550
AspS9I GGNCC 1 cut(s) 865
AsuC2I CCSGG 1 cut(s) 207
AsuHPI GGTGA 3 cut(s) 58, 195, 223
AvaII GGWCC 1 cut(s) 865
BauI CACGAG 1 cut(s) 391
Bbv12I GWGCWC 1 cut(s) 1062
BbvI GCAGC 3 cut(s) 253, 833, 945
BccI CCATC 2 cut(s) 204, 838
BcgI CGANNNNNNTGC 2 cut(s) 382, 416
BciT130I CCWGG 1 cut(s) 160
BciVI GTATCC 1 cut(s) 1075
BclI TGATCA 2 cut(s) 454, 502
BcnI CCSGG 1 cut(s) 207
BcoDI GTCTC 2 cut(s) 16, 1063
BfaI CTAG 1 cut(s) 771
BfmI CTRYAG 3 cut(s) 819, 899, 919
BfuAI ACCTGC 1 cut(s) 395
BfuI GTATCC 1 cut(s) 1075
BisI GCNGC 3 cut(s) 267, 822, 934
BlsI GCNGC 3 cut(s) 268, 823, 935
Bme1390I CCNGG 2 cut(s) 160, 207
Bme18I GGWCC 1 cut(s) 865
BmgT120I GGNCC 1 cut(s) 865
BmrFI CCNGG 2 cut(s) 160, 207
BmsI GCATC 3 cut(s) 801, 862, 1121
BplI GAGNNNNNCTC 2 cut(s) 747, 779
BpuEI CTTGAG 1 cut(s) 1046
BpuMI CCSGG 1 cut(s) 207
BsaHI GRCGYC 1 cut(s) 1123
BsaI GGTCTC 1 cut(s) 1063
Bsc4I CCNNNNNNNGG 2 cut(s) 393, 793
Bse1I ACTGG 1 cut(s) 307
Bse3DI GCAATG 2 cut(s) 376, 831
BseBI CCWGG 1 cut(s) 160
BseGI GGATG 2 cut(s) 215, 816
BseLI CCNNNNNNNGG 2 cut(s) 393, 793
BseMI GCAATG 2 cut(s) 376, 831
BseMII CTCAG 2 cut(s) 294, 773
BseNI ACTGG 1 cut(s) 307
BseRI GAGGAG 1 cut(s) 768
BseXI GCAGC 3 cut(s) 253, 833, 945
BsgI GTGCAG 1 cut(s) 373
BshFI GGCC 1 cut(s) 594
BsiHKAI GWGCWC 1 cut(s) 1062
BsiSI CCGG 1 cut(s) 206
BslI CCNNNNNNNGG 2 cut(s) 393, 793
BsmAI GTCTC 2 cut(s) 16, 1063
BsnI GGCC 1 cut(s) 594
Bso31I GGTCTC 1 cut(s) 1063
Bsp1286I GDGCHC 1 cut(s) 1062
Bsp143I GATC 5 cut(s) 78, 454, 502, 796, 982
BspACI CCGC 4 cut(s) 350, 511, 656, 1014
BspANI GGCC 1 cut(s) 594
BspCNI CTCAG 2 cut(s) 293, 774
BspHI TCATGA 1 cut(s) 877
BspMAI CTGCAG 1 cut(s) 823
BspMI ACCTGC 1 cut(s) 395
BspPI GGATC 2 cut(s) 86, 804
BspTNI GGTCTC 1 cut(s) 1063
BsrDI GCAATG 2 cut(s) 376, 831
BsrI ACTGG 1 cut(s) 307
BssMI GATC 5 cut(s) 78, 454, 502, 796, 982
BssNI GRCGYC 1 cut(s) 1123
BssSI CACGAG 1 cut(s) 391
Bst2BI CACGAG 1 cut(s) 391
Bst2UI CCWGG 1 cut(s) 160
Bst4CI ACNGT 4 cut(s) 37, 545, 692, 846
BstACI GRCGYC 1 cut(s) 1123
BstC8I GCNNGC 2 cut(s) 187, 405
BstDEI CTNAG 4 cut(s) 110, 280, 723, 782
BstENI CCTNNNNNAGG 1 cut(s) 391
BstF5I GGATG 2 cut(s) 215, 816
BstHHI GCGC 1 cut(s) 550
BstKTI GATC 5 cut(s) 81, 457, 505, 799, 985
BstMAI GTCTC 2 cut(s) 16, 1063
BstMBI GATC 5 cut(s) 78, 454, 502, 796, 982
BstMWI GCNNNNNNNGC 3 cut(s) 99, 275, 930
BstNI CCWGG 1 cut(s) 160
BstSCI CCNGG 2 cut(s) 158, 205
BstSFI CTRYAG 3 cut(s) 819, 899, 919
BstV1I GCAGC 3 cut(s) 253, 833, 945
BstX2I RGATCY 1 cut(s) 796
BstYI RGATCY 1 cut(s) 796
BsuI GTATCC 1 cut(s) 1075
BsuRI GGCC 1 cut(s) 594
BtgZI GCGATG 1 cut(s) 458
BtsCI GGATG 2 cut(s) 215, 816
BtsI GCAGTG 1 cut(s) 718
BtsIMutI CAGTG 5 cut(s) 33, 375, 642, 718, 948
BveI ACCTGC 1 cut(s) 395
Cac8I GCNNGC 2 cut(s) 187, 405
CciI TCATGA 1 cut(s) 877
CfoI GCGC 1 cut(s) 550
Cfr13I GGNCC 1 cut(s) 865
CseI GACGC 1 cut(s) 1131
CviAII CATG 3 cut(s) 603, 678, 878
CviJI RGCY 8 cut(s) 178, 185, 261, 594, 763, 786, 924, 1066
CviKI_1 RGCY 8 cut(s) 178, 185, 261, 594, 763, 786, 924, 1066
DdeI CTNAG 4 cut(s) 110, 280, 723, 782
DpnI GATC 5 cut(s) 80, 456, 504, 798, 984
DpnII GATC 5 cut(s) 78, 454, 502, 796, 982
DraI TTTAAA 1 cut(s) 928
EciI GGCGGA 1 cut(s) 1029
Eco31I GGTCTC 1 cut(s) 1063
Eco47I GGWCC 1 cut(s) 865
EcoNI CCTNNNNNAGG 1 cut(s) 391
EcoRII CCWGG 1 cut(s) 158
EcoT22I ATGCAT 2 cut(s) 128, 1114
FaeI CATG 3 cut(s) 606, 681, 881
FalI AAGNNNNNCTT 4 cut(s) 783, 815, 852, 884
FatI CATG 3 cut(s) 602, 677, 877
FbaI TGATCA 2 cut(s) 454, 502
FblI GTMKAC 1 cut(s) 441
Fnu4HI GCNGC 3 cut(s) 267, 822, 934
FokI GGATG 2 cut(s) 222, 823
Fsp4HI GCNGC 3 cut(s) 267, 822, 934
FspBI CTAG 1 cut(s) 771
GlaI GCGC 1 cut(s) 549
GluI GCNGC 3 cut(s) 267, 822, 934
HaeIII GGCC 1 cut(s) 594
HapII CCGG 1 cut(s) 206
HgaI GACGC 1 cut(s) 1131
HhaI GCGC 1 cut(s) 550
Hin1I GRCGYC 1 cut(s) 1123
Hin1II CATG 3 cut(s) 606, 681, 881
Hin6I GCGC 1 cut(s) 548
HinP1I GCGC 1 cut(s) 548
HincII GTYRAC 1 cut(s) 575
HindII GTYRAC 1 cut(s) 575
HinfI GANTC 3 cut(s) 4, 155, 469
HpaII CCGG 1 cut(s) 206
HphI GGTGA 3 cut(s) 58, 195, 223
Hpy166II GTNNAC 3 cut(s) 442, 575, 865
Hpy188I TCNGA 5 cut(s) 154, 283, 450, 468, 783
Hpy188III TCNNGA 2 cut(s) 878, 1116
Hpy8I GTNNAC 3 cut(s) 442, 575, 865
HpyCH4III ACNGT 4 cut(s) 37, 545, 692, 846
HpyCH4V TGCA 9 cut(s) 126, 189, 332, 356, 390, 563, 602, 821, 1112
HpyF10VI GCNNNNNNNGC 3 cut(s) 99, 275, 930
HpyF3I CTNAG 4 cut(s) 110, 280, 723, 782
Hsp92I GRCGYC 1 cut(s) 1123
Hsp92II CATG 3 cut(s) 606, 681, 881
HspAI GCGC 1 cut(s) 548
Ksp22I TGATCA 2 cut(s) 454, 502
Kzo9I GATC 5 cut(s) 78, 454, 502, 796, 982
LmnI GCTCC 2 cut(s) 513, 755
Lsp1109I GCAGC 3 cut(s) 253, 833, 945
LweI GCATC 3 cut(s) 801, 862, 1121
MaeI CTAG 1 cut(s) 771
MaeIII GTNAC 3 cut(s) 201, 409, 686
MalI GATC 5 cut(s) 80, 456, 504, 798, 984
MboI GATC 5 cut(s) 78, 454, 502, 796, 982
MfeI CAATTG 2 cut(s) 255, 579
MflI RGATCY 1 cut(s) 796
MhlI GDGCHC 1 cut(s) 1062
MluCI AATT 6 cut(s) 195, 255, 302, 579, 766, 1129
MmeI TCCRAC 1 cut(s) 944
Mph1103I ATGCAT 2 cut(s) 128, 1114
MseI TTAA 4 cut(s) 486, 615, 927, 1135
MslI CAYNNNNRTG 2 cut(s) 208, 1049
MspI CCGG 1 cut(s) 206
MspR9I CCNGG 2 cut(s) 160, 207
MunI CAATTG 2 cut(s) 255, 579
MvaI CCWGG 1 cut(s) 160
MwoI GCNNNNNNNGC 3 cut(s) 99, 275, 930
NciI CCSGG 1 cut(s) 207
NdeII GATC 5 cut(s) 78, 454, 502, 796, 982
NlaIII CATG 3 cut(s) 606, 681, 881
NmeAIII GCCGAG 1 cut(s) 1092
NmuCI GTSAC 2 cut(s) 201, 686
NsiI ATGCAT 2 cut(s) 128, 1114
PagI TCATGA 1 cut(s) 877
PfeI GAWTC 3 cut(s) 4, 155, 469
PkrI GCNGC 3 cut(s) 268, 823, 935
Psp6I CCWGG 1 cut(s) 158
PspGI CCWGG 1 cut(s) 158
PspPI GGNCC 1 cut(s) 865
PstI CTGCAG 1 cut(s) 823
PsuI RGATCY 1 cut(s) 796
RseI CAYNNNNRTG 2 cut(s) 208, 1049
SaqAI TTAA 4 cut(s) 486, 615, 927, 1135
SatI GCNGC 3 cut(s) 267, 822, 934
Sau3AI GATC 5 cut(s) 78, 454, 502, 796, 982
Sau96I GGNCC 1 cut(s) 865
ScrFI CCNGG 2 cut(s) 160, 207
SduI GDGCHC 1 cut(s) 1062
SfaNI GCATC 3 cut(s) 801, 862, 1121
SfcI CTRYAG 3 cut(s) 819, 899, 919
SinI GGWCC 1 cut(s) 865
SmiMI CAYNNNNRTG 2 cut(s) 208, 1049
SmlI CTYRAG 1 cut(s) 1061
SmoI CTYRAG 1 cut(s) 1061
Sse9I AATT 6 cut(s) 195, 255, 302, 579, 766, 1129
SsiI CCGC 4 cut(s) 350, 511, 656, 1014
SspI AATATT 1 cut(s) 225
SspMI CTAG 1 cut(s) 771
StyD4I CCNGG 2 cut(s) 158, 205
TaaI ACNGT 4 cut(s) 37, 545, 692, 846
TasI AATT 6 cut(s) 195, 255, 302, 579, 766, 1129
TfiI GAWTC 3 cut(s) 4, 155, 469
Tru1I TTAA 4 cut(s) 486, 615, 927, 1135
Tru9I TTAA 4 cut(s) 486, 615, 927, 1135
TscAI CASTG 5 cut(s) 40, 382, 642, 718, 948
TseFI GTSAC 2 cut(s) 201, 686
TseI GCWGC 3 cut(s) 266, 821, 933
Tsp45I GTSAC 2 cut(s) 201, 686
TspDTI ATGAA 4 cut(s) 217, 437, 897, 1033
TspRI CASTG 5 cut(s) 40, 382, 642, 718, 948
VpaK11BI GGWCC 1 cut(s) 865
XagI CCTNNNNNAGG 1 cut(s) 391
XapI RAATTY 1 cut(s) 1129
XcmI CCANNNNNNNNNTGG 1 cut(s) 40
XmiI GTMKAC 1 cut(s) 441
XspI CTAG 1 cut(s) 771
Zsp2I ATGCAT 2 cut(s) 128, 1114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.