Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001483

Physical Location & Seq

Genomic Coordinates Forward (+)

1015982 .. 1020928

Gene Structure 4947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G014200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGAAAAATTAGGATCAATGACCAAAGAAGGAGCCTCATCTTCCTCTACCAAAAGGAAGTCCAGAAGACCCAAATATTCCAAGTTCACACAGCAAGAGCTTTCAGCTTGCAAACCAATTTTAACACCAGGATGGGTCATTTCTATATTTGTCACAATCGGCATTATCTTTATCCCTATTGGCTTTGCTTCCTTATTTGCATCAGAGCGTGTGGTGGAAATTATAGACCACTATGACAAAGATTGTGTTCCTCTTAGATATACGGACGATAAGCTTGCATTTATTCAGAGTAGTAAAACTAACAAGACCTGTATTAGGAGACTAACTGTTCCAAAACAAATGAAATCTCCCGTTTACATCTACTACCAGCTTGATCATTTCTATCAGAATCATCGCCGATATGTTAAAAGTAGAAGTGACAGTCAGTTGCGGAGCAAGTCTGATGAGAATAAAACAAGCACCTGTGATCCTGAACGCAATTCACCAAATGGTGCAATTGTTCCCTGTGGTCTGATTGCATGGAGTTTGTTTAATGACACATACAAGTTTTCAGTGAAAAACAAACAACTGGGGGTCAACAAAAAGGACATCACATGGAAAAGTGACCAGGGGAATAAGTTCGGCTCGGATGTCTATCCTAAAAATTTCCAGAGTGGGGGTTTGATTGGAGGAGCAAAACTGAATTCTAGCATACCTCTGAGTGAACAAGAAGATCTTATTGTTTGGATGCGGACTGCAGCACTGCCAACGTTCAGAAAACTATATGGGAGGATAGAAGTGGACCTTGAAGCTAATGATGTAGTAATTGTAACAATAGAGAATAATTATAACACTTACAGCTTCGGTGGCAACAAGAAGCTCGTACTTTCAACCGCAAGCTGGATTGGTGGAAAGAATTATCTGCTAGGCATAGCATACCTTACTGTTGGCGGACTCTGTTTGTTCTTGGCCATAAGCTTCATACTTCTATATTTGATAAAGCCAAGGCCTCTTGGGGATACATCCTACTTGTCTTGGAACAGAGGTGCATCAGGAGGACATATATTTATTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDC50

Protein Analysis

352

Amino Acids

39.46

Weight (kDa)

9.55

Isoelectric Point (pI)

45.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001483)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16360 AT1G16360 AT1G16360 AT1G16360 AT1G16360 AT1G54320 AT1G79450 AT1G79450 AT3G12740
fragaria_vesca	FvH4_1g27280 FvH4_1g27280 FvH4_1g27280 FvH4_1g27280 FvH4_1g27280 FvH4_1g27280 FvH4_3g14090
malus_domestica	MD05G1238200.v1.1 MD09G1280100.v1.1 MD10G1216500.v1.1 MD17G1286800.v1.1
prunus_persica	Prupe.3G014200_v2.0.a1 Prupe.3G014200_v2.0.a1 Prupe.3G014200_v2.0.a1 Prupe.4G128200_v2.0.a1 Prupe.4G128200_v2.0.a1
pyrus_communis	pycom05g21420 pycom09g18820 pycom17g27020
rosa_chinensis	RchiOBHm_Chr3g0488711 RchiOBHm_Chr5g0023401
rosa_laevigata	RLG00000022929 RLG00000032719
rosa_multiflora	Rmu_sc0000265.1_g000021 Rmu_sc0004629.1_g000005 Rmu_sc0006389.1_g000001
rosa_roxburghii	Rroxscaffold_1G00055650 Rroxscaffold_1G00055940
rosa_rugosa	Rorug03G0240900 Rorug05G0078900
rosa_samantha	Rh3AG289200 Rh3BG326000 Rh3CG323700 Rh3DG322000 Rh5AG165800 Rh5BG165000 Rh5CG179900 Rh5DG166500
rosa_wichuraiana	Rw0G013700 Rw3G025600 Rw5G014920 Rw5G015080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	828
AciI	CCGC	4 cut(s)	430, 730, 873, 930
AclI	AACGTT	1 cut(s)	749
AclWI	GGATC	2 cut(s)	22, 461
AcoI	YGGCCR	1 cut(s)	948
AcsI	RAATTY	2 cut(s)	643, 682
AfaI	GTAC	1 cut(s)	864
AfiI	CCNNNNNNNGG	3 cut(s)	315, 655, 879
AgsI	TTSAA	2 cut(s)	788, 870
AjnI	CCWGG	2 cut(s)	127, 606
Alw26I	GTCTC	1 cut(s)	313
AlwI	GGATC	2 cut(s)	22, 461
AoxI	GGCC	2 cut(s)	948, 986
ApeKI	GCWGC	1 cut(s)	737
ApoI	RAATTY	2 cut(s)	643, 682
Asp700I	GAANNNNTTC	1 cut(s)	617
AspS9I	GGNCC	1 cut(s)	781
AsuHPI	GGTGA	1 cut(s)	474
AvaII	GGWCC	1 cut(s)	781
BalI	TGGCCA	1 cut(s)	950
BbsI	GAAGAC	1 cut(s)	73
BbvI	GCAGC	1 cut(s)	749
BccI	CCATC	1 cut(s)	126
BcgI	CGANNNNNNTGC	2 cut(s)	257, 291
BciT130I	CCWGG	2 cut(s)	129, 608
BciVI	GTATCC	1 cut(s)	991
BclI	TGATCA	1 cut(s)	373
BcoDI	GTCTC	1 cut(s)	313
BfaI	CTAG	3 cut(s)	687, 905, 1054
BfmI	CTRYAG	1 cut(s)	735
BfuI	GTATCC	1 cut(s)	991
BglII	AGATCT	1 cut(s)	712
BisI	GCNGC	1 cut(s)	738
BlsI	GCNGC	1 cut(s)	739
Bme1390I	CCNGG	2 cut(s)	129, 608
Bme18I	GGWCC	1 cut(s)	781
BmgT120I	GGNCC	1 cut(s)	781
BmiI	GGNNCC	1 cut(s)	34
BmrFI	CCNGG	2 cut(s)	129, 608
BmrI	ACTGGG	1 cut(s)	578
BmsI	GCATC	3 cut(s)	209, 717, 1037
BmuI	ACTGGG	1 cut(s)	578
BpiI	GAAGAC	1 cut(s)	73
BsaBI	GATNNNNATC	1 cut(s)	633
BsaJI	CCNNGG	2 cut(s)	607, 983
Bsc4I	CCNNNNNNNGG	3 cut(s)	315, 655, 879
Bse1I	ACTGG	1 cut(s)	573
Bse8I	GATNNNNATC	1 cut(s)	633
BseBI	CCWGG	2 cut(s)	129, 608
BseDI	CCNNGG	2 cut(s)	607, 983
BseGI	GGATG	4 cut(s)	137, 634, 732, 1001
BseJI	GATNNNNATC	1 cut(s)	633
BseLI	CCNNNNNNNGG	3 cut(s)	315, 655, 879
BseMII	CTCAG	1 cut(s)	689
BseNI	ACTGG	1 cut(s)	573
BseRI	GAGGAG	1 cut(s)	684
BseXI	GCAGC	1 cut(s)	749
BshFI	GGCC	2 cut(s)	950, 988
BslI	CCNNNNNNNGG	3 cut(s)	315, 655, 879
BsmAI	GTCTC	1 cut(s)	313
BsnI	GGCC	2 cut(s)	950, 988
Bsp143I	GATC	4 cut(s)	14, 373, 466, 712
BspACI	CCGC	4 cut(s)	430, 730, 873, 930
BspANI	GGCC	2 cut(s)	950, 988
BspCNI	CTCAG	1 cut(s)	690
BspLI	GGNNCC	1 cut(s)	34
BspMAI	CTGCAG	1 cut(s)	739
BspPI	GGATC	2 cut(s)	22, 461
BsrI	ACTGG	1 cut(s)	573
BssECI	CCNNGG	2 cut(s)	607, 983
BssMI	GATC	4 cut(s)	14, 373, 466, 712
BssT1I	CCWWGG	1 cut(s)	983
Bst2UI	CCWGG	2 cut(s)	129, 608
Bst4CI	ACNGT	3 cut(s)	328, 422, 925
BstC8I	GCNNGC	3 cut(s)	109, 276, 877
BstDEI	CTNAG	2 cut(s)	254, 698
BstENI	CCTNNNNNAGG	1 cut(s)	313
BstF5I	GGATG	4 cut(s)	137, 634, 732, 1001
BstKTI	GATC	4 cut(s)	17, 376, 469, 715
BstMAI	GTCTC	1 cut(s)	313
BstMBI	GATC	4 cut(s)	14, 373, 466, 712
BstMWI	GCNNNNNNNGC	1 cut(s)	846
BstNI	CCWGG	2 cut(s)	129, 608
BstSCI	CCNGG	2 cut(s)	127, 606
BstSFI	CTRYAG	1 cut(s)	735
BstV1I	GCAGC	1 cut(s)	749
BstV2I	GAAGAC	1 cut(s)	73
BstX2I	RGATCY	1 cut(s)	712
BstYI	RGATCY	1 cut(s)	712
BsuI	GTATCC	1 cut(s)	991
BsuRI	GGCC	2 cut(s)	950, 988
BtgZI	GCGATG	1 cut(s)	377
BtsCI	GGATG	4 cut(s)	137, 634, 732, 1001
BtsI	GCAGTG	1 cut(s)	740
BtsIMutI	CAGTG	2 cut(s)	558, 740
Cac8I	GCNNGC	3 cut(s)	109, 276, 877
Cfr13I	GGNCC	1 cut(s)	781
Csp6I	GTAC	1 cut(s)	863
CviAII	CATG	2 cut(s)	519, 594
CviQI	GTAC	1 cut(s)	863
DdeI	CTNAG	2 cut(s)	254, 698
DpnI	GATC	4 cut(s)	16, 375, 468, 714
DpnII	GATC	4 cut(s)	14, 373, 466, 712
EaeI	YGGCCR	1 cut(s)	948
EciI	GGCGGA	1 cut(s)	945
Eco130I	CCWWGG	1 cut(s)	983
Eco147I	AGGCCT	1 cut(s)	988
Eco47I	GGWCC	1 cut(s)	781
EcoNI	CCTNNNNNAGG	1 cut(s)	313
EcoRI	GAATTC	1 cut(s)	682
EcoRII	CCWGG	2 cut(s)	127, 606
EcoT14I	CCWWGG	1 cut(s)	983
ErhI	CCWWGG	1 cut(s)	983
FaeI	CATG	2 cut(s)	522, 597
FalI	AAGNNNNNCTT	4 cut(s)	699, 731, 768, 800
FatI	CATG	2 cut(s)	518, 593
FbaI	TGATCA	1 cut(s)	373
Fnu4HI	GCNGC	1 cut(s)	738
FokI	GGATG	4 cut(s)	144, 641, 739, 988
Fsp4HI	GCNGC	1 cut(s)	738
FspBI	CTAG	3 cut(s)	687, 905, 1054
GluI	GCNGC	1 cut(s)	738
HaeIII	GGCC	2 cut(s)	950, 988
Hin1II	CATG	2 cut(s)	522, 597
HincII	GTYRAC	1 cut(s)	577
HindII	GTYRAC	1 cut(s)	577
HindIII	AAGCTT	2 cut(s)	272, 955
HinfI	GANTC	2 cut(s)	388, 933
HphI	GGTGA	1 cut(s)	474
Hpy166II	GTNNAC	5 cut(s)	87, 355, 577, 704, 781
Hpy188I	TCNGA	8 cut(s)	205, 288, 387, 442, 513, 628, 699, 755
Hpy188III	TCNNGA	4 cut(s)	63, 470, 649, 1032
Hpy8I	GTNNAC	5 cut(s)	87, 355, 577, 704, 781
HpyAV	CCTTC	1 cut(s)	23
HpyCH4III	ACNGT	3 cut(s)	328, 422, 925
HpyCH4IV	ACGT	1 cut(s)	749
HpyCH4V	TGCA	7 cut(s)	111, 200, 278, 494, 518, 737, 1028
HpyF10VI	GCNNNNNNNGC	1 cut(s)	846
HpyF3I	CTNAG	2 cut(s)	254, 698
HpySE526I	ACGT	1 cut(s)	749
Hsp92II	CATG	2 cut(s)	522, 597
Ksp22I	TGATCA	1 cut(s)	373
Kzo9I	GATC	4 cut(s)	14, 373, 466, 712
LmnI	GCTCC	3 cut(s)	32, 432, 671
Lsp1109I	GCAGC	1 cut(s)	749
LweI	GCATC	3 cut(s)	209, 717, 1037
MaeI	CTAG	3 cut(s)	687, 905, 1054
MaeII	ACGT	1 cut(s)	749
MaeIII	GTNAC	4 cut(s)	151, 416, 602, 808
MalI	GATC	4 cut(s)	16, 375, 468, 714
MboI	GATC	4 cut(s)	14, 373, 466, 712
MboII	GAAGA	3 cut(s)	33, 78, 722
MfeI	CAATTG	1 cut(s)	495
MflI	RGATCY	1 cut(s)	712
MlsI	TGGCCA	1 cut(s)	950
MluNI	TGGCCA	1 cut(s)	950
MlyI	GAGTC	1 cut(s)	927
MnlI	CCTC	9 cut(s)	46, 55, 261, 662, 705, 762, 999, 1016, 1028
Mox20I	TGGCCA	1 cut(s)	950
MroXI	GAANNNNTTC	1 cut(s)	617
MscI	TGGCCA	1 cut(s)	950
MseI	TTAA	3 cut(s)	122, 405, 531
MslI	CAYNNNNRTG	1 cut(s)	130
Msp20I	TGGCCA	1 cut(s)	950
MspR9I	CCNGG	2 cut(s)	129, 608
MunI	CAATTG	1 cut(s)	495
MvaI	CCWGG	2 cut(s)	129, 608
MwoI	GCNNNNNNNGC	1 cut(s)	846
NdeII	GATC	4 cut(s)	14, 373, 466, 712
NlaIII	CATG	2 cut(s)	522, 597
NlaIV	GGNNCC	1 cut(s)	34
NmuCI	GTSAC	3 cut(s)	151, 416, 602
PceI	AGGCCT	1 cut(s)	988
PdmI	GAANNNNTTC	1 cut(s)	617
PfeI	GAWTC	1 cut(s)	388
PkrI	GCNGC	1 cut(s)	739
PleI	GAGTC	1 cut(s)	927
PpsI	GAGTC	1 cut(s)	927
PsiI	TTATAA	1 cut(s)	828
Psp1406I	AACGTT	1 cut(s)	749
Psp6I	CCWGG	2 cut(s)	127, 606
PspGI	CCWGG	2 cut(s)	127, 606
PspN4I	GGNNCC	1 cut(s)	34
PspPI	GGNCC	1 cut(s)	781
PstI	CTGCAG	1 cut(s)	739
PsuI	RGATCY	1 cut(s)	712
RsaI	GTAC	1 cut(s)	864
RsaNI	GTAC	1 cut(s)	863
RseI	CAYNNNNRTG	1 cut(s)	130
SaqAI	TTAA	3 cut(s)	122, 405, 531
SatI	GCNGC	1 cut(s)	738
Sau3AI	GATC	4 cut(s)	14, 373, 466, 712
Sau96I	GGNCC	1 cut(s)	781
SchI	GAGTC	1 cut(s)	927
ScrFI	CCNGG	2 cut(s)	129, 608
SfaNI	GCATC	3 cut(s)	209, 717, 1037
SfcI	CTRYAG	1 cut(s)	735
SinI	GGWCC	1 cut(s)	781
SmiMI	CAYNNNNRTG	1 cut(s)	130
SseBI	AGGCCT	1 cut(s)	988
SsiI	CCGC	4 cut(s)	430, 730, 873, 930
SspI	AATATT	1 cut(s)	77
SspMI	CTAG	3 cut(s)	687, 905, 1054
StuI	AGGCCT	1 cut(s)	988
StyD4I	CCNGG	2 cut(s)	127, 606
StyI	CCWWGG	1 cut(s)	983
TaaI	ACNGT	3 cut(s)	328, 422, 925
TaiI	ACGT	1 cut(s)	752
TfiI	GAWTC	1 cut(s)	388
Tru1I	TTAA	3 cut(s)	122, 405, 531
Tru9I	TTAA	3 cut(s)	122, 405, 531
TscAI	CASTG	2 cut(s)	558, 747
TseFI	GTSAC	3 cut(s)	151, 416, 602
TseI	GCWGC	1 cut(s)	737
Tsp45I	GTSAC	3 cut(s)	151, 416, 602
TspDTI	ATGAA	2 cut(s)	356, 949
TspGWI	ACGGA	1 cut(s)	278
TspRI	CASTG	2 cut(s)	558, 747
VpaK11BI	GGWCC	1 cut(s)	781
XagI	CCTNNNNNAGG	1 cut(s)	313
XapI	RAATTY	2 cut(s)	643, 682
XmnI	GAANNNNTTC	1 cut(s)	617
XspI	CTAG	3 cut(s)	687, 905, 1054

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.