Rh3CG323700

ALA-interacting subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0001483
Physical Location & Seq
Forward (+)
34880307 .. 34883809
3503 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG323700.1

Sequence Viewer

Length: 1140 bp
ATGATTCTTGTCTCTTTCTTTTTCCCTAACACCACTGTTGTATTGGTGATTTTCAATCATTATGAATGGAATGGTGCAATTGGATCATTTTCTTGTGCTGTGGAAGCATTATTCCAAGAAAACTTATATGCATTGTCCATTTTTATATATATTTCAGATTCCAGGTTCTCACAGCAAGAGCTTCCAGCTTGCAAACCAATTTTGTCACCGGGATGGGTGGTTTCAATATTCATCACCATTGGCATTGTCTTTATCCCAATTGGCTTTGCTGCCTTATTCGCCTCAGAGCGTGTTGTGGAACTACAATTCCAATATGACCAAGATTGTGTTCCTGCAAAGTATAAGGATAATACGGTTGCATATATTCAAAGCAATGACACTGACAAGACCTGCTCGAGGAAAATGCCTGCTGTTACAAGTAAAATGAAATCTCCCATTTATGTCTACTATCAGATTGATCACTACTTTCAGAATCATCGCCGATATGTTAAAAGTAGAAGTGACGATCAGTTGCGGAGCGTGGCAAAGGAAAATAGCACAAGCGACTGTGCGCCTGAACGCTTTGCGAAAAATGGTCAACCAATTGTTCCTTGTGGCCTCGTTGCATGGAGTTTGTTTAATGACACATATAAGTTTTCAGTGAAAAACAAAACAATAGCGGTCAGCAAAAAGGACATCACATGGAAAAGTGACCGTGAGAAAAAGTTTTCAAGCAGTGTCTATCCTAAGAACTTTCAGTCTGGGGGTTTGATTGGAGGAGCAAAGCTCAATTCTAGCATACCTCTGAGCCAACAAGAGGATCTTATTGTTTGGATGCGAACTGCAGCAATGCCATCTTTTAGAAAACTGTATGGGAGGATAGAAGTGGACCTTGAGGCTCATGATGAAATAACAATAGAACTACAGAATAACTATAATACCTACAGCTTTAAAGGCAGCAAGTCAGTGATACTTTCTACTGCGAGTTGGATTGGTGGAAAGAATGATCTAATGGGCATAGCATACCTTACCATTGGCGGAATGTGTTTGTTCTTGGCAATATGCTTCATACTTATGTATGTGCTCAAGCCGAGACCTCTTGGGGATACCTCCTACTTGTCTTGGAATAGAAATGCATCAGGAGGACGCCTAAATTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CDC50

Protein Analysis

379

Amino Acids

42.85

Weight (kDa)

8.92

Isoelectric Point (pI)

44.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CDC50 PF03381 92 - 358 1.6e-85 LEM3 (ligand-effect modulator 3) family / CDC50 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 398
AccI GTMKAC 1 cut(s) 444
AciI CCGC 3 cut(s) 514, 659, 1017
AclWI GGATC 2 cut(s) 91, 807
AcsI RAATTY 1 cut(s) 1132
AcyI GRCGYC 1 cut(s) 1126
AfiI CCNNNNNNNGG 2 cut(s) 396, 796
AgsI TTSAA 4 cut(s) 55, 225, 368, 711
AjnI CCWGG 1 cut(s) 161
AjuI GAANNNNNNNTTGG 2 cut(s) 312, 344
AloI GAACNNNNNNTCC 2 cut(s) 291, 323
AluBI AGCT 4 cut(s) 181, 188, 766, 927
AluI AGCT 4 cut(s) 181, 188, 766, 927
Alw21I GWGCWC 1 cut(s) 1065
Alw26I GTCTC 2 cut(s) 16, 1066
AlwI GGATC 2 cut(s) 91, 807
Ama87I CYCGRG 1 cut(s) 394
AoxI GGCC 1 cut(s) 595
ApeKI GCWGC 3 cut(s) 269, 824, 936
ApoI RAATTY 1 cut(s) 1132
AspLEI GCGC 1 cut(s) 553
AspS9I GGNCC 1 cut(s) 868
AsuC2I CCSGG 1 cut(s) 210
AsuHPI GGTGA 3 cut(s) 58, 198, 226
AvaI CYCGRG 1 cut(s) 394
AvaII GGWCC 1 cut(s) 868
Bbv12I GWGCWC 1 cut(s) 1065
BbvI GCAGC 3 cut(s) 256, 836, 948
BccI CCATC 2 cut(s) 207, 841
BcgI CGANNNNNNTGC 2 cut(s) 385, 419
BciT130I CCWGG 1 cut(s) 163
BciVI GTATCC 1 cut(s) 1078
BclI TGATCA 1 cut(s) 457
BcnI CCSGG 1 cut(s) 210
BcoDI GTCTC 2 cut(s) 16, 1066
BfaI CTAG 1 cut(s) 774
BfmI CTRYAG 3 cut(s) 822, 902, 922
BfuAI ACCTGC 1 cut(s) 398
BfuI GTATCC 1 cut(s) 1078
BisI GCNGC 3 cut(s) 270, 825, 937
BlsI GCNGC 3 cut(s) 271, 826, 938
Bme1390I CCNGG 2 cut(s) 163, 210
Bme18I GGWCC 1 cut(s) 868
BmeT110I CYCGRG 1 cut(s) 394
BmgT120I GGNCC 1 cut(s) 868
BmrFI CCNGG 2 cut(s) 163, 210
BmsI GCATC 2 cut(s) 804, 1124
BplI GAGNNNNNCTC 2 cut(s) 750, 782
BpuEI CTTGAG 2 cut(s) 893, 1049
BpuMI CCSGG 1 cut(s) 210
BsaHI GRCGYC 1 cut(s) 1126
BsaI GGTCTC 1 cut(s) 1066
Bsc4I CCNNNNNNNGG 2 cut(s) 396, 796
Bse3DI GCAATG 2 cut(s) 379, 834
BseBI CCWGG 1 cut(s) 163
BseGI GGATG 2 cut(s) 218, 819
BseLI CCNNNNNNNGG 2 cut(s) 396, 796
BseMI GCAATG 2 cut(s) 379, 834
BseMII CTCAG 2 cut(s) 297, 776
BseRI GAGGAG 1 cut(s) 771
BseXI GCAGC 3 cut(s) 256, 836, 948
BshFI GGCC 1 cut(s) 597
BsiHKAI GWGCWC 1 cut(s) 1065
BsiHKCI CYCGRG 1 cut(s) 394
BsiSI CCGG 1 cut(s) 209
BslI CCNNNNNNNGG 2 cut(s) 396, 796
BsmAI GTCTC 2 cut(s) 16, 1066
BsnI GGCC 1 cut(s) 597
Bso31I GGTCTC 1 cut(s) 1066
BsoBI CYCGRG 1 cut(s) 394
Bsp1286I GDGCHC 1 cut(s) 1065
Bsp143I GATC 5 cut(s) 83, 457, 505, 799, 985
BspACI CCGC 3 cut(s) 514, 659, 1017
BspANI GGCC 1 cut(s) 597
BspCNI CTCAG 2 cut(s) 296, 777
BspHI TCATGA 1 cut(s) 880
BspMAI CTGCAG 1 cut(s) 826
BspMI ACCTGC 1 cut(s) 398
BspPI GGATC 2 cut(s) 91, 807
BspTNI GGTCTC 1 cut(s) 1066
BsrDI GCAATG 2 cut(s) 379, 834
BssMI GATC 5 cut(s) 83, 457, 505, 799, 985
BssNI GRCGYC 1 cut(s) 1126
Bst2UI CCWGG 1 cut(s) 163
Bst4CI ACNGT 5 cut(s) 37, 355, 548, 695, 849
BstACI GRCGYC 1 cut(s) 1126
BstC8I GCNNGC 2 cut(s) 190, 408
BstDEI CTNAG 3 cut(s) 283, 726, 785
BstENI CCTNNNNNAGG 1 cut(s) 394
BstF5I GGATG 2 cut(s) 218, 819
BstHHI GCGC 1 cut(s) 553
BstKTI GATC 5 cut(s) 86, 460, 508, 802, 988
BstMAI GTCTC 2 cut(s) 16, 1066
BstMBI GATC 5 cut(s) 83, 457, 505, 799, 985
BstMWI GCNNNNNNNGC 3 cut(s) 104, 278, 933
BstNI CCWGG 1 cut(s) 163
BstSCI CCNGG 2 cut(s) 161, 208
BstSFI CTRYAG 3 cut(s) 822, 902, 922
BstV1I GCAGC 3 cut(s) 256, 836, 948
BstX2I RGATCY 1 cut(s) 799
BstYI RGATCY 1 cut(s) 799
BsuI GTATCC 1 cut(s) 1078
BsuRI GGCC 1 cut(s) 597
BtgZI GCGATG 1 cut(s) 461
BtsCI GGATG 2 cut(s) 218, 819
BtsI GCAGTG 1 cut(s) 721
BtsIMutI CAGTG 5 cut(s) 33, 378, 645, 721, 951
BveI ACCTGC 1 cut(s) 398
Cac8I GCNNGC 2 cut(s) 190, 408
CciI TCATGA 1 cut(s) 880
CfoI GCGC 1 cut(s) 553
Cfr13I GGNCC 1 cut(s) 868
CseI GACGC 1 cut(s) 1134
CviAII CATG 3 cut(s) 606, 681, 881
CviJI RGCY 9 cut(s) 181, 188, 264, 597, 766, 789, 878, 927, 1069
CviKI_1 RGCY 9 cut(s) 181, 188, 264, 597, 766, 789, 878, 927, 1069
DdeI CTNAG 3 cut(s) 283, 726, 785
DpnI GATC 5 cut(s) 85, 459, 507, 801, 987
DpnII GATC 5 cut(s) 83, 457, 505, 799, 985
DraI TTTAAA 1 cut(s) 931
EciI GGCGGA 1 cut(s) 1032
Eco31I GGTCTC 1 cut(s) 1066
Eco47I GGWCC 1 cut(s) 868
Eco88I CYCGRG 1 cut(s) 394
EcoNI CCTNNNNNAGG 1 cut(s) 394
EcoRII CCWGG 1 cut(s) 161
EcoT22I ATGCAT 2 cut(s) 133, 1117
FaeI CATG 3 cut(s) 609, 684, 884
FalI AAGNNNNNCTT 4 cut(s) 786, 818, 855, 887
FatI CATG 3 cut(s) 605, 680, 880
FbaI TGATCA 1 cut(s) 457
FblI GTMKAC 1 cut(s) 444
Fnu4HI GCNGC 3 cut(s) 270, 825, 937
FokI GGATG 2 cut(s) 225, 826
Fsp4HI GCNGC 3 cut(s) 270, 825, 937
FspBI CTAG 1 cut(s) 774
GlaI GCGC 1 cut(s) 552
GluI GCNGC 3 cut(s) 270, 825, 937
HaeIII GGCC 1 cut(s) 597
HapII CCGG 1 cut(s) 209
HgaI GACGC 1 cut(s) 1134
HhaI GCGC 1 cut(s) 553
Hin1I GRCGYC 1 cut(s) 1126
Hin1II CATG 3 cut(s) 609, 684, 884
Hin6I GCGC 1 cut(s) 551
HinP1I GCGC 1 cut(s) 551
HincII GTYRAC 1 cut(s) 578
HindII GTYRAC 1 cut(s) 578
HinfI GANTC 3 cut(s) 4, 158, 472
HpaII CCGG 1 cut(s) 209
HphI GGTGA 3 cut(s) 58, 198, 226
Hpy166II GTNNAC 3 cut(s) 445, 578, 868
Hpy188I TCNGA 5 cut(s) 157, 286, 453, 471, 786
Hpy188III TCNNGA 2 cut(s) 881, 1119
Hpy8I GTNNAC 3 cut(s) 445, 578, 868
HpyCH4III ACNGT 5 cut(s) 37, 355, 548, 695, 849
HpyCH4V TGCA 8 cut(s) 77, 131, 192, 335, 359, 605, 824, 1115
HpyF10VI GCNNNNNNNGC 3 cut(s) 104, 278, 933
HpyF3I CTNAG 3 cut(s) 283, 726, 785
Hsp92I GRCGYC 1 cut(s) 1126
Hsp92II CATG 3 cut(s) 609, 684, 884
HspAI GCGC 1 cut(s) 551
Ksp22I TGATCA 1 cut(s) 457
Kzo9I GATC 5 cut(s) 83, 457, 505, 799, 985
LmnI GCTCC 2 cut(s) 516, 758
Lsp1109I GCAGC 3 cut(s) 256, 836, 948
LweI GCATC 2 cut(s) 804, 1124
MaeI CTAG 1 cut(s) 774
MaeIII GTNAC 4 cut(s) 204, 412, 500, 689
MalI GATC 5 cut(s) 85, 459, 507, 801, 987
MboI GATC 5 cut(s) 83, 457, 505, 799, 985
MfeI CAATTG 3 cut(s) 78, 258, 582
MflI RGATCY 1 cut(s) 799
MhlI GDGCHC 1 cut(s) 1065
MluCI AATT 7 cut(s) 78, 198, 258, 305, 582, 769, 1132
MmeI TCCRAC 1 cut(s) 947
Mph1103I ATGCAT 2 cut(s) 133, 1117
MseI TTAA 4 cut(s) 489, 618, 930, 1138
MslI CAYNNNNRTG 2 cut(s) 211, 1052
MspI CCGG 1 cut(s) 209
MspR9I CCNGG 2 cut(s) 163, 210
MunI CAATTG 3 cut(s) 78, 258, 582
MvaI CCWGG 1 cut(s) 163
MwoI GCNNNNNNNGC 3 cut(s) 104, 278, 933
NciI CCSGG 1 cut(s) 210
NdeII GATC 5 cut(s) 83, 457, 505, 799, 985
NlaIII CATG 3 cut(s) 609, 684, 884
NmeAIII GCCGAG 1 cut(s) 1095
NmuCI GTSAC 3 cut(s) 204, 500, 689
NsiI ATGCAT 2 cut(s) 133, 1117
PaeR7I CTCGAG 1 cut(s) 394
PagI TCATGA 1 cut(s) 880
PfeI GAWTC 3 cut(s) 4, 158, 472
PkrI GCNGC 3 cut(s) 271, 826, 938
Psp6I CCWGG 1 cut(s) 161
PspGI CCWGG 1 cut(s) 161
PspPI GGNCC 1 cut(s) 868
PspXI VCTCGAGB 1 cut(s) 394
PstI CTGCAG 1 cut(s) 826
PsuI RGATCY 1 cut(s) 799
RseI CAYNNNNRTG 2 cut(s) 211, 1052
SaqAI TTAA 4 cut(s) 489, 618, 930, 1138
SatI GCNGC 3 cut(s) 270, 825, 937
Sau3AI GATC 5 cut(s) 83, 457, 505, 799, 985
Sau96I GGNCC 1 cut(s) 868
ScrFI CCNGG 2 cut(s) 163, 210
SduI GDGCHC 1 cut(s) 1065
SfaNI GCATC 2 cut(s) 804, 1124
SfcI CTRYAG 3 cut(s) 822, 902, 922
Sfr274I CTCGAG 1 cut(s) 394
SinI GGWCC 1 cut(s) 868
SlaI CTCGAG 1 cut(s) 394
SmiMI CAYNNNNRTG 2 cut(s) 211, 1052
SmlI CTYRAG 3 cut(s) 394, 872, 1064
SmoI CTYRAG 3 cut(s) 394, 872, 1064
Sse9I AATT 7 cut(s) 78, 198, 258, 305, 582, 769, 1132
SsiI CCGC 3 cut(s) 514, 659, 1017
SspI AATATT 1 cut(s) 228
SspMI CTAG 1 cut(s) 774
StyD4I CCNGG 2 cut(s) 161, 208
TaaI ACNGT 5 cut(s) 37, 355, 548, 695, 849
TaqI TCGA 1 cut(s) 395
TasI AATT 7 cut(s) 78, 198, 258, 305, 582, 769, 1132
TfiI GAWTC 3 cut(s) 4, 158, 472
Tru1I TTAA 4 cut(s) 489, 618, 930, 1138
Tru9I TTAA 4 cut(s) 489, 618, 930, 1138
TscAI CASTG 5 cut(s) 40, 385, 645, 721, 951
TseFI GTSAC 3 cut(s) 204, 500, 689
TseI GCWGC 3 cut(s) 269, 824, 936
Tsp45I GTSAC 3 cut(s) 204, 500, 689
TspDTI ATGAA 5 cut(s) 78, 220, 440, 900, 1036
TspRI CASTG 5 cut(s) 40, 385, 645, 721, 951
VpaK11BI GGWCC 1 cut(s) 868
XagI CCTNNNNNAGG 1 cut(s) 394
XapI RAATTY 1 cut(s) 1132
XcmI CCANNNNNNNNNTGG 1 cut(s) 40
XhoI CTCGAG 1 cut(s) 394
XmiI GTMKAC 1 cut(s) 444
XspI CTAG 1 cut(s) 774
Zsp2I ATGCAT 2 cut(s) 133, 1117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.