Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006389.1

Orthogroup ID

OG0001483

Physical Location & Seq

Genomic Coordinates Reverse (-)

113 .. 3259

Gene Structure 3147 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006389.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

atgaccccaaaaggtgacaagggcaaagaaggagactcgtcctttgccaaaaagaagtccagaagacccaaatattccaggttctcacagcaagagcttccagcttgcaaaccaattttgtcaccgggatgggtggtttcaatattcatcaccattggcattgtctttatcccaattggctttgctgccttattcgcctcagagcgtgttgtggaactacaattccaatatgaccaagattgtgttcctgcaaagtataaggataatacggttgcatatattcaaagcaatgacactgacaagacctgctcgaggaaaatgcctgctgttacaagtaaaatgaaatctcccatttatgtctactatcagattgatcactactttcagaatcatcgtcgatatgttaaaagtagaagtgacgatcagttgcggagcgtggcaaaggaaaatagcacaagcgactgtgcgcctgaacgctttgcgaaaaatggtcaaccaattgttccttgtggcctcgttgcatggagtttgtttaatgacacatataagttttcagtgaaaaacaaaacaatagcggtcagcaaaaaggacatcacatggaaaagtgaccgtgagaaaaagttttcaagcagtgtctatcctaagaactttcagtctgggggtttgattggaggagcaaagctcaattctagcatacctctgagccaacaagaggatcttattgtttggatgcgaactgcagcaatgccatcttttagaaaactgtatgggaggatagaagtggaccttgaggctcatgatgaaataacaatagaactacagaataactataatacctacagctttaaaggcagcaagtcagtgatactttctactgcgagttggattggtggaaagaatgatctaatgggcatagcataccttaccattggcggaatgtgtttgttcttggcaatatgcttcatacttatgtatgtgctcaagccgagacctcttggggatacctcctacttgtcttggaatagaaatgcatcaggaggacgcctaaatttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDC50

Protein Analysis

351

Amino Acids

39.62

Weight (kDa)

9.49

Isoelectric Point (pI)

45.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001483)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16360 AT1G16360 AT1G16360 AT1G16360 AT1G16360 AT1G54320 AT1G79450 AT1G79450 AT3G12740
fragaria_vesca	FvH4_1g27280 FvH4_1g27280 FvH4_1g27280 FvH4_1g27280 FvH4_1g27280 FvH4_1g27280 FvH4_3g14090
malus_domestica	MD05G1238200.v1.1 MD09G1280100.v1.1 MD10G1216500.v1.1 MD17G1286800.v1.1
prunus_persica	Prupe.3G014200_v2.0.a1 Prupe.3G014200_v2.0.a1 Prupe.3G014200_v2.0.a1 Prupe.4G128200_v2.0.a1 Prupe.4G128200_v2.0.a1
pyrus_communis	pycom05g21420 pycom09g18820 pycom17g27020
rosa_chinensis	RchiOBHm_Chr3g0488711 RchiOBHm_Chr5g0023401
rosa_laevigata	RLG00000022929 RLG00000032719
rosa_multiflora	Rmu_sc0000265.1_g000021 Rmu_sc0004629.1_g000005 Rmu_sc0006389.1_g000001
rosa_roxburghii	Rroxscaffold_1G00055650 Rroxscaffold_1G00055940
rosa_rugosa	Rorug03G0240900 Rorug05G0078900
rosa_samantha	Rh3AG289200 Rh3BG326000 Rh3CG323700 Rh3DG322000 Rh5AG165800 Rh5BG165000 Rh5CG179900 Rh5DG166500
rosa_wichuraiana	Rw0G013700 Rw3G025600 Rw5G014920 Rw5G015080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	314
AccI	GTMKAC	1 cut(s)	360
AciI	CCGC	3 cut(s)	430, 575, 933
AclWI	GGATC	1 cut(s)	723
AcsI	RAATTY	1 cut(s)	1048
AcyI	GRCGYC	1 cut(s)	1042
AfiI	CCNNNNNNNGG	2 cut(s)	312, 712
AgsI	TTSAA	3 cut(s)	141, 284, 627
AjnI	CCWGG	1 cut(s)	77
AjuI	GAANNNNNNNTTGG	2 cut(s)	228, 260
AloI	GAACNNNNNNTCC	2 cut(s)	207, 239
AluBI	AGCT	4 cut(s)	97, 104, 682, 843
AluI	AGCT	4 cut(s)	97, 104, 682, 843
Alw21I	GWGCWC	1 cut(s)	981
Alw26I	GTCTC	2 cut(s)	27, 982
AlwI	GGATC	1 cut(s)	723
Ama87I	CYCGRG	1 cut(s)	310
AoxI	GGCC	1 cut(s)	511
ApeKI	GCWGC	3 cut(s)	185, 740, 852
ApoI	RAATTY	1 cut(s)	1048
ArsI	GACNNNNNNTTYG	2 cut(s)	26, 58
AspLEI	GCGC	1 cut(s)	469
AspS9I	GGNCC	1 cut(s)	784
AsuC2I	CCSGG	1 cut(s)	126
AsuHPI	GGTGA	3 cut(s)	26, 114, 142
AvaI	CYCGRG	1 cut(s)	310
AvaII	GGWCC	1 cut(s)	784
BbsI	GAAGAC	1 cut(s)	70
Bbv12I	GWGCWC	1 cut(s)	981
BbvI	GCAGC	3 cut(s)	172, 752, 864
BccI	CCATC	2 cut(s)	123, 757
BcgI	CGANNNNNNTGC	2 cut(s)	301, 335
BciT130I	CCWGG	1 cut(s)	79
BciVI	GTATCC	1 cut(s)	994
BclI	TGATCA	1 cut(s)	373
BcnI	CCSGG	1 cut(s)	126
BcoDI	GTCTC	2 cut(s)	27, 982
BfaI	CTAG	1 cut(s)	690
BfmI	CTRYAG	3 cut(s)	738, 818, 838
BfuAI	ACCTGC	1 cut(s)	314
BfuI	GTATCC	1 cut(s)	994
BisI	GCNGC	3 cut(s)	186, 741, 853
BlsI	GCNGC	3 cut(s)	187, 742, 854
Bme1390I	CCNGG	2 cut(s)	79, 126
Bme18I	GGWCC	1 cut(s)	784
BmeT110I	CYCGRG	1 cut(s)	310
BmgT120I	GGNCC	1 cut(s)	784
BmrFI	CCNGG	2 cut(s)	79, 126
BmsI	GCATC	2 cut(s)	720, 1040
BpiI	GAAGAC	1 cut(s)	70
BplI	GAGNNNNNCTC	2 cut(s)	666, 698
BpuEI	CTTGAG	2 cut(s)	809, 965
BpuMI	CCSGG	1 cut(s)	126
BsaHI	GRCGYC	1 cut(s)	1042
BsaI	GGTCTC	1 cut(s)	982
Bsc4I	CCNNNNNNNGG	2 cut(s)	312, 712
Bse3DI	GCAATG	2 cut(s)	295, 750
BseBI	CCWGG	1 cut(s)	79
BseGI	GGATG	2 cut(s)	134, 735
BseLI	CCNNNNNNNGG	2 cut(s)	312, 712
BseMI	GCAATG	2 cut(s)	295, 750
BseMII	CTCAG	2 cut(s)	213, 692
BseRI	GAGGAG	1 cut(s)	687
BseXI	GCAGC	3 cut(s)	172, 752, 864
BshFI	GGCC	1 cut(s)	513
BsiHKAI	GWGCWC	1 cut(s)	981
BsiHKCI	CYCGRG	1 cut(s)	310
BsiSI	CCGG	1 cut(s)	125
BslI	CCNNNNNNNGG	2 cut(s)	312, 712
BsmAI	GTCTC	2 cut(s)	27, 982
BsnI	GGCC	1 cut(s)	513
Bso31I	GGTCTC	1 cut(s)	982
BsoBI	CYCGRG	1 cut(s)	310
Bsp1286I	GDGCHC	1 cut(s)	981
Bsp143I	GATC	4 cut(s)	373, 421, 715, 901
BspACI	CCGC	3 cut(s)	430, 575, 933
BspANI	GGCC	1 cut(s)	513
BspCNI	CTCAG	2 cut(s)	212, 693
BspHI	TCATGA	1 cut(s)	796
BspMAI	CTGCAG	1 cut(s)	742
BspMI	ACCTGC	1 cut(s)	314
BspPI	GGATC	1 cut(s)	723
BspTNI	GGTCTC	1 cut(s)	982
BsrDI	GCAATG	2 cut(s)	295, 750
BssMI	GATC	4 cut(s)	373, 421, 715, 901
BssNI	GRCGYC	1 cut(s)	1042
Bst2UI	CCWGG	1 cut(s)	79
Bst4CI	ACNGT	4 cut(s)	271, 464, 611, 765
BstACI	GRCGYC	1 cut(s)	1042
BstC8I	GCNNGC	2 cut(s)	106, 324
BstDEI	CTNAG	3 cut(s)	199, 642, 701
BstENI	CCTNNNNNAGG	1 cut(s)	310
BstF5I	GGATG	2 cut(s)	134, 735
BstHHI	GCGC	1 cut(s)	469
BstKTI	GATC	4 cut(s)	376, 424, 718, 904
BstMAI	GTCTC	2 cut(s)	27, 982
BstMBI	GATC	4 cut(s)	373, 421, 715, 901
BstMWI	GCNNNNNNNGC	2 cut(s)	194, 849
BstNI	CCWGG	1 cut(s)	79
BstSCI	CCNGG	2 cut(s)	77, 124
BstSFI	CTRYAG	3 cut(s)	738, 818, 838
BstV1I	GCAGC	3 cut(s)	172, 752, 864
BstV2I	GAAGAC	1 cut(s)	70
BstX2I	RGATCY	1 cut(s)	715
BstYI	RGATCY	1 cut(s)	715
BsuI	GTATCC	1 cut(s)	994
BsuRI	GGCC	1 cut(s)	513
BtsCI	GGATG	2 cut(s)	134, 735
BtsI	GCAGTG	1 cut(s)	637
BtsIMutI	CAGTG	4 cut(s)	294, 561, 637, 867
BveI	ACCTGC	1 cut(s)	314
Cac8I	GCNNGC	2 cut(s)	106, 324
CciI	TCATGA	1 cut(s)	796
CfoI	GCGC	1 cut(s)	469
Cfr13I	GGNCC	1 cut(s)	784
CseI	GACGC	1 cut(s)	1050
CviAII	CATG	3 cut(s)	522, 597, 797
CviJI	RGCY	9 cut(s)	97, 104, 180, 513, 682, 705, 794, 843, 985
CviKI_1	RGCY	9 cut(s)	97, 104, 180, 513, 682, 705, 794, 843, 985
DdeI	CTNAG	3 cut(s)	199, 642, 701
DpnI	GATC	4 cut(s)	375, 423, 717, 903
DpnII	GATC	4 cut(s)	373, 421, 715, 901
DraI	TTTAAA	1 cut(s)	847
EciI	GGCGGA	1 cut(s)	948
Eco31I	GGTCTC	1 cut(s)	982
Eco47I	GGWCC	1 cut(s)	784
Eco88I	CYCGRG	1 cut(s)	310
EcoNI	CCTNNNNNAGG	1 cut(s)	310
EcoRII	CCWGG	1 cut(s)	77
EcoT22I	ATGCAT	1 cut(s)	1033
FaeI	CATG	3 cut(s)	525, 600, 800
FalI	AAGNNNNNCTT	4 cut(s)	702, 734, 771, 803
FatI	CATG	3 cut(s)	521, 596, 796
FbaI	TGATCA	1 cut(s)	373
FblI	GTMKAC	1 cut(s)	360
Fnu4HI	GCNGC	3 cut(s)	186, 741, 853
FokI	GGATG	2 cut(s)	141, 742
Fsp4HI	GCNGC	3 cut(s)	186, 741, 853
FspBI	CTAG	1 cut(s)	690
GlaI	GCGC	1 cut(s)	468
GluI	GCNGC	3 cut(s)	186, 741, 853
HaeIII	GGCC	1 cut(s)	513
HapII	CCGG	1 cut(s)	125
HgaI	GACGC	1 cut(s)	1050
HhaI	GCGC	1 cut(s)	469
Hin1I	GRCGYC	1 cut(s)	1042
Hin1II	CATG	3 cut(s)	525, 600, 800
Hin6I	GCGC	1 cut(s)	467
HinP1I	GCGC	1 cut(s)	467
HincII	GTYRAC	1 cut(s)	494
HindII	GTYRAC	1 cut(s)	494
HinfI	GANTC	2 cut(s)	35, 388
HpaII	CCGG	1 cut(s)	125
HphI	GGTGA	3 cut(s)	26, 114, 142
Hpy166II	GTNNAC	3 cut(s)	361, 494, 784
Hpy188I	TCNGA	4 cut(s)	202, 369, 387, 702
Hpy188III	TCNNGA	3 cut(s)	60, 797, 1035
Hpy8I	GTNNAC	3 cut(s)	361, 494, 784
Hpy99I	CGWCG	1 cut(s)	399
HpyAV	CCTTC	1 cut(s)	23
HpyCH4III	ACNGT	4 cut(s)	271, 464, 611, 765
HpyCH4V	TGCA	6 cut(s)	108, 251, 275, 521, 740, 1031
HpyF10VI	GCNNNNNNNGC	2 cut(s)	194, 849
HpyF3I	CTNAG	3 cut(s)	199, 642, 701
Hsp92I	GRCGYC	1 cut(s)	1042
Hsp92II	CATG	3 cut(s)	525, 600, 800
HspAI	GCGC	1 cut(s)	467
Ksp22I	TGATCA	1 cut(s)	373
Kzo9I	GATC	4 cut(s)	373, 421, 715, 901
LmnI	GCTCC	2 cut(s)	432, 674
Lsp1109I	GCAGC	3 cut(s)	172, 752, 864
LweI	GCATC	2 cut(s)	720, 1040
MaeI	CTAG	1 cut(s)	690
MaeIII	GTNAC	5 cut(s)	14, 120, 328, 416, 605
MalI	GATC	4 cut(s)	375, 423, 717, 903
MboI	GATC	4 cut(s)	373, 421, 715, 901
MboII	GAAGA	1 cut(s)	75
MfeI	CAATTG	2 cut(s)	174, 498
MflI	RGATCY	1 cut(s)	715
MhlI	GDGCHC	1 cut(s)	981
MluCI	AATT	6 cut(s)	114, 174, 221, 498, 685, 1048
MlyI	GAGTC	1 cut(s)	29
MmeI	TCCRAC	1 cut(s)	863
Mph1103I	ATGCAT	1 cut(s)	1033
MseI	TTAA	4 cut(s)	405, 534, 846, 1054
MslI	CAYNNNNRTG	2 cut(s)	127, 968
MspI	CCGG	1 cut(s)	125
MspR9I	CCNGG	2 cut(s)	79, 126
MunI	CAATTG	2 cut(s)	174, 498
MvaI	CCWGG	1 cut(s)	79
MwoI	GCNNNNNNNGC	2 cut(s)	194, 849
NciI	CCSGG	1 cut(s)	126
NdeII	GATC	4 cut(s)	373, 421, 715, 901
NlaIII	CATG	3 cut(s)	525, 600, 800
NmeAIII	GCCGAG	1 cut(s)	1011
NmuCI	GTSAC	4 cut(s)	14, 120, 416, 605
NsiI	ATGCAT	1 cut(s)	1033
PaeR7I	CTCGAG	1 cut(s)	310
PagI	TCATGA	1 cut(s)	796
PfeI	GAWTC	1 cut(s)	388
PkrI	GCNGC	3 cut(s)	187, 742, 854
PleI	GAGTC	1 cut(s)	29
PpsI	GAGTC	1 cut(s)	29
Psp6I	CCWGG	1 cut(s)	77
PspGI	CCWGG	1 cut(s)	77
PspPI	GGNCC	1 cut(s)	784
PspXI	VCTCGAGB	1 cut(s)	310
PstI	CTGCAG	1 cut(s)	742
PsuI	RGATCY	1 cut(s)	715
RseI	CAYNNNNRTG	2 cut(s)	127, 968
SaqAI	TTAA	4 cut(s)	405, 534, 846, 1054
SatI	GCNGC	3 cut(s)	186, 741, 853
Sau3AI	GATC	4 cut(s)	373, 421, 715, 901
Sau96I	GGNCC	1 cut(s)	784
SchI	GAGTC	1 cut(s)	29
ScrFI	CCNGG	2 cut(s)	79, 126
SduI	GDGCHC	1 cut(s)	981
SfaNI	GCATC	2 cut(s)	720, 1040
SfcI	CTRYAG	3 cut(s)	738, 818, 838
Sfr274I	CTCGAG	1 cut(s)	310
SinI	GGWCC	1 cut(s)	784
SlaI	CTCGAG	1 cut(s)	310
SmiMI	CAYNNNNRTG	2 cut(s)	127, 968
SmlI	CTYRAG	3 cut(s)	310, 788, 980
SmoI	CTYRAG	3 cut(s)	310, 788, 980
Sse9I	AATT	6 cut(s)	114, 174, 221, 498, 685, 1048
SsiI	CCGC	3 cut(s)	430, 575, 933
SspI	AATATT	2 cut(s)	74, 144
SspMI	CTAG	1 cut(s)	690
StyD4I	CCNGG	2 cut(s)	77, 124
TaaI	ACNGT	4 cut(s)	271, 464, 611, 765
TaqI	TCGA	2 cut(s)	311, 397
TasI	AATT	6 cut(s)	114, 174, 221, 498, 685, 1048
TfiI	GAWTC	1 cut(s)	388
Tru1I	TTAA	4 cut(s)	405, 534, 846, 1054
Tru9I	TTAA	4 cut(s)	405, 534, 846, 1054
TscAI	CASTG	4 cut(s)	301, 561, 637, 867
TseFI	GTSAC	4 cut(s)	14, 120, 416, 605
TseI	GCWGC	3 cut(s)	185, 740, 852
Tsp45I	GTSAC	4 cut(s)	14, 120, 416, 605
TspDTI	ATGAA	4 cut(s)	136, 356, 816, 952
TspRI	CASTG	4 cut(s)	301, 561, 637, 867
VpaK11BI	GGWCC	1 cut(s)	784
XagI	CCTNNNNNAGG	1 cut(s)	310
XapI	RAATTY	1 cut(s)	1048
XhoI	CTCGAG	1 cut(s)	310
XmiI	GTMKAC	1 cut(s)	360
XspI	CTAG	1 cut(s)	690
Zsp2I	ATGCAT	1 cut(s)	1033

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.