Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001483

Physical Location & Seq

Genomic Coordinates Forward (+)

22512169 .. 22512857

Gene Structure 689 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0240900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGACGGCAGCATCTTACGACGAGCCGTCGTCGACGTGTTTGACGCTTTACGAACAAGGCGGTGCTCCCGCGGTTTTCCAATCCCCAAAATGCCCTCGCTGGAAGCGCGCCGATTCCCTCCGGCGTTGCCAAACCGCCGTGCGTCAAGGCCGGAGAAACCGCCTCGAGGATCGTGCTCTGTGCGCTCTCGAACTTCGCATTCCGTTTCCTGGTGAATTAGGGATTAAGGAGGTTAAAGTTGGGATTGTGGCTGTTTTTGATGGGCGTAATGGTGCTGAAGCAAGTGATATGGCTTCAAAGCTTTTATTGGAGTATTACTCCATTTTGCATACCTATTTTCTTCTTGATGGGCATAATGTGGCAGCTGTTGTCGTTCCATTGATATCTACTATGTTTTTTGAAAGTTTTCTGATCAAAGATCAGTTTAATTTGGAGAGGGATAGAAGCTGTGAAGCATTACTGCACTTAGGACTACAGAGCTCCACTGATGAATGCTCAGGTGAGTCTAAATCAAACTATAGAACATACAACTCGACATCATTGCATATAGCAGTCCTTTGGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDC50

Protein Analysis

188

Amino Acids

21.12

Weight (kDa)

6.43

Isoelectric Point (pI)

55.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001483)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16360 AT1G16360 AT1G16360 AT1G16360 AT1G16360 AT1G54320 AT1G79450 AT1G79450 AT3G12740
fragaria_vesca	FvH4_1g27280 FvH4_1g27280 FvH4_1g27280 FvH4_1g27280 FvH4_1g27280 FvH4_1g27280 FvH4_3g14090
malus_domestica	MD05G1238200.v1.1 MD09G1280100.v1.1 MD10G1216500.v1.1 MD17G1286800.v1.1
prunus_persica	Prupe.3G014200_v2.0.a1 Prupe.3G014200_v2.0.a1 Prupe.3G014200_v2.0.a1 Prupe.4G128200_v2.0.a1 Prupe.4G128200_v2.0.a1
pyrus_communis	pycom05g21420 pycom09g18820 pycom17g27020
rosa_chinensis	RchiOBHm_Chr3g0488711 RchiOBHm_Chr5g0023401
rosa_laevigata	RLG00000022929 RLG00000032719
rosa_multiflora	Rmu_sc0000265.1_g000021 Rmu_sc0004629.1_g000005 Rmu_sc0006389.1_g000001
rosa_roxburghii	Rroxscaffold_1G00055650 Rroxscaffold_1G00055940
rosa_rugosa	Rorug03G0240900 Rorug05G0078900
rosa_samantha	Rh3AG289200 Rh3BG326000 Rh3CG323700 Rh3DG322000 Rh5AG165800 Rh5BG165000 Rh5CG179900 Rh5DG166500
rosa_wichuraiana	Rw0G013700 Rw3G025600 Rw5G014920 Rw5G015080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	164
AccI	GTMKAC	1 cut(s)	32
AccII	CGCG	2 cut(s)	71, 108
AciI	CCGC	5 cut(s)	60, 69, 71, 135, 160
AclWI	GGATC	1 cut(s)	177
AcuI	CTGAAG	1 cut(s)	297
AfiI	CCNNNNNNNGG	2 cut(s)	166, 209
AflIII	ACRYGT	1 cut(s)	35
AgsI	TTSAA	2 cut(s)	297, 401
AhdI	GACNNNNNGTC	1 cut(s)	25
AjiI	CACGTC	1 cut(s)	36
AjnI	CCWGG	1 cut(s)	208
AluBI	AGCT	4 cut(s)	301, 365, 447, 480
AluI	AGCT	4 cut(s)	301, 365, 447, 480
Alw21I	GWGCWC	3 cut(s)	67, 178, 482
AlwI	GGATC	1 cut(s)	177
Ama87I	CYCGRG	1 cut(s)	164
AoxI	GGCC	1 cut(s)	148
ApeKI	GCWGC	2 cut(s)	8, 362
Asp700I	GAANNNNTTC	1 cut(s)	405
AspLEI	GCGC	3 cut(s)	108, 110, 185
AsuHPI	GGTGA	2 cut(s)	224, 512
AvaI	CYCGRG	1 cut(s)	164
BanII	GRGCYC	1 cut(s)	482
Bbv12I	GWGCWC	3 cut(s)	67, 178, 482
BbvI	GCAGC	2 cut(s)	20, 374
BccI	CCATC	2 cut(s)	254, 341
BceAI	ACGGC	3 cut(s)	10, 21, 122
BcgI	CGANNNNNNTGC	4 cut(s)	155, 189, 523, 557
BciT130I	CCWGG	1 cut(s)	210
BclI	TGATCA	1 cut(s)	411
BfmI	CTRYAG	2 cut(s)	473, 517
BisI	GCNGC	2 cut(s)	9, 363
BlsI	GCNGC	2 cut(s)	10, 364
Bme1390I	CCNGG	1 cut(s)	210
BmeRI	GACNNNNNGTC	1 cut(s)	25
BmeT110I	CYCGRG	1 cut(s)	164
BmgBI	CACGTC	1 cut(s)	36
BmrFI	CCNGG	1 cut(s)	210
BmsI	GCATC	1 cut(s)	20
BplI	GAGNNNNNCTC	2 cut(s)	302, 334
Bpu10I	CCTNAGC	1 cut(s)	496
BsaJI	CCNNGG	1 cut(s)	69
Bsc4I	CCNNNNNNNGG	2 cut(s)	166, 209
Bse3DI	GCAATG	1 cut(s)	539
BseBI	CCWGG	1 cut(s)	210
BseDI	CCNNGG	1 cut(s)	69
BseLI	CCNNNNNNNGG	2 cut(s)	166, 209
BseMI	GCAATG	1 cut(s)	539
BseMII	CTCAG	1 cut(s)	510
BsePI	GCGCGC	1 cut(s)	106
BseXI	GCAGC	2 cut(s)	20, 374
BsgI	GTGCAG	1 cut(s)	446
Bsh1236I	CGCG	2 cut(s)	71, 108
BshFI	GGCC	1 cut(s)	150
BsiHKAI	GWGCWC	3 cut(s)	67, 178, 482
BsiHKCI	CYCGRG	1 cut(s)	164
BsiSI	CCGG	2 cut(s)	121, 151
BslI	CCNNNNNNNGG	2 cut(s)	166, 209
BsmI	GAATGC	2 cut(s)	198, 497
BsnI	GGCC	1 cut(s)	150
BsoBI	CYCGRG	1 cut(s)	164
Bsp1286I	GDGCHC	3 cut(s)	67, 178, 482
Bsp143I	GATC	3 cut(s)	169, 411, 418
BspACI	CCGC	5 cut(s)	60, 69, 71, 135, 160
BspANI	GGCC	1 cut(s)	150
BspCNI	CTCAG	1 cut(s)	509
BspFNI	CGCG	2 cut(s)	71, 108
BspPI	GGATC	1 cut(s)	177
BsrDI	GCAATG	1 cut(s)	539
BssECI	CCNNGG	1 cut(s)	69
BssHII	GCGCGC	1 cut(s)	106
BssMI	GATC	3 cut(s)	169, 411, 418
Bst2UI	CCWGG	1 cut(s)	210
BstC8I	GCNNGC	1 cut(s)	108
BstDEI	CTNAG	2 cut(s)	466, 496
BstDSI	CCRYGG	1 cut(s)	69
BstFNI	CGCG	2 cut(s)	71, 108
BstHHI	GCGC	3 cut(s)	108, 110, 185
BstKTI	GATC	3 cut(s)	172, 414, 421
BstMBI	GATC	3 cut(s)	169, 411, 418
BstMWI	GCNNNNNNNGC	2 cut(s)	105, 182
BstNI	CCWGG	1 cut(s)	210
BstSCI	CCNGG	1 cut(s)	208
BstSFI	CTRYAG	2 cut(s)	473, 517
BstUI	CGCG	2 cut(s)	71, 108
BstV1I	GCAGC	2 cut(s)	20, 374
BsuRI	GGCC	1 cut(s)	150
BtgI	CCRYGG	1 cut(s)	69
BtrI	CACGTC	1 cut(s)	36
BtsIMutI	CAGTG	1 cut(s)	483
Cac8I	GCNNGC	1 cut(s)	108
CfoI	GCGC	3 cut(s)	108, 110, 185
Cfr42I	CCGCGG	1 cut(s)	72
CseI	GACGC	2 cut(s)	52, 131
CviJI	RGCY	8 cut(s)	25, 150, 251, 293, 301, 365, 447, 480
CviKI_1	RGCY	8 cut(s)	25, 150, 251, 293, 301, 365, 447, 480
DdeI	CTNAG	2 cut(s)	466, 496
DpnI	GATC	3 cut(s)	171, 413, 420
DpnII	GATC	3 cut(s)	169, 411, 418
DriI	GACNNNNNGTC	1 cut(s)	25
Eam1105I	GACNNNNNGTC	1 cut(s)	25
Ecl136II	GAGCTC	1 cut(s)	480
Eco24I	GRGCYC	1 cut(s)	482
Eco32I	GATATC	1 cut(s)	384
Eco53kI	GAGCTC	1 cut(s)	480
Eco57I	CTGAAG	1 cut(s)	297
Eco88I	CYCGRG	1 cut(s)	164
EcoICRI	GAGCTC	1 cut(s)	480
EcoRII	CCWGG	1 cut(s)	208
EcoRV	GATATC	1 cut(s)	384
EcoT38I	GRGCYC	1 cut(s)	482
FaiI	YATR	8 cut(s)	290, 330, 354, 392, 519, 526, 546, 548
FauI	CCCGC	1 cut(s)	76
FbaI	TGATCA	1 cut(s)	411
FblI	GTMKAC	1 cut(s)	32
Fnu4HI	GCNGC	2 cut(s)	9, 363
FriOI	GRGCYC	1 cut(s)	482
Fsp4HI	GCNGC	2 cut(s)	9, 363
GlaI	GCGC	3 cut(s)	107, 109, 184
GluI	GCNGC	2 cut(s)	9, 363
HaeIII	GGCC	1 cut(s)	150
HapII	CCGG	2 cut(s)	121, 151
HgaI	GACGC	2 cut(s)	52, 131
HhaI	GCGC	3 cut(s)	108, 110, 185
Hin6I	GCGC	3 cut(s)	106, 108, 183
HinP1I	GCGC	3 cut(s)	106, 108, 183
HincII	GTYRAC	1 cut(s)	33
HindII	GTYRAC	1 cut(s)	33
HindIII	AAGCTT	1 cut(s)	299
HinfI	GANTC	2 cut(s)	113, 503
HpaII	CCGG	2 cut(s)	121, 151
HphI	GGTGA	2 cut(s)	224, 512
Hpy166II	GTNNAC	1 cut(s)	33
Hpy188I	TCNGA	1 cut(s)	411
Hpy188III	TCNNGA	2 cut(s)	188, 344
Hpy8I	GTNNAC	1 cut(s)	33
Hpy99I	CGWCG	4 cut(s)	23, 31, 34, 37
HpyCH4IV	ACGT	1 cut(s)	35
HpyCH4V	TGCA	3 cut(s)	328, 463, 544
HpyF10VI	GCNNNNNNNGC	2 cut(s)	105, 182
HpyF3I	CTNAG	2 cut(s)	466, 496
HpySE526I	ACGT	1 cut(s)	35
HspAI	GCGC	3 cut(s)	106, 108, 183
Ksp22I	TGATCA	1 cut(s)	411
KspI	CCGCGG	1 cut(s)	72
Kzo9I	GATC	3 cut(s)	169, 411, 418
LmnI	GCTCC	2 cut(s)	70, 485
LpnPI	CCDG	6 cut(s)	85, 134, 164, 195, 222, 483
Lsp1109I	GCAGC	2 cut(s)	20, 374
LweI	GCATC	1 cut(s)	20
MaeII	ACGT	1 cut(s)	35
MalI	GATC	3 cut(s)	171, 413, 420
MboI	GATC	3 cut(s)	169, 411, 418
MboII	GAAGA	1 cut(s)	332
MhlI	GDGCHC	3 cut(s)	67, 178, 482
MluCI	AATT	2 cut(s)	215, 427
MlyI	GAGTC	1 cut(s)	512
MnlI	CCTC	6 cut(s)	105, 128, 160, 173, 223, 429
MroXI	GAANNNNTTC	1 cut(s)	405
MseI	TTAA	3 cut(s)	225, 234, 426
MspA1I	CMGCKG	2 cut(s)	71, 365
MspI	CCGG	2 cut(s)	121, 151
MspR9I	CCNGG	1 cut(s)	210
Mva1269I	GAATGC	2 cut(s)	198, 497
MvaI	CCWGG	1 cut(s)	210
MvnI	CGCG	2 cut(s)	71, 108
MwoI	GCNNNNNNNGC	2 cut(s)	105, 182
NdeII	GATC	3 cut(s)	169, 411, 418
PaeR7I	CTCGAG	1 cut(s)	164
PauI	GCGCGC	1 cut(s)	106
PctI	GAATGC	2 cut(s)	198, 497
PdmI	GAANNNNTTC	1 cut(s)	405
PfeI	GAWTC	1 cut(s)	113
PkrI	GCNGC	2 cut(s)	10, 364
PleI	GAGTC	1 cut(s)	511
PpsI	GAGTC	1 cut(s)	511
Psp124BI	GAGCTC	1 cut(s)	482
Psp6I	CCWGG	1 cut(s)	208
PspGI	CCWGG	1 cut(s)	208
PspXI	VCTCGAGB	1 cut(s)	164
PteI	GCGCGC	1 cut(s)	106
PvuII	CAGCTG	1 cut(s)	365
SacI	GAGCTC	1 cut(s)	482
SacII	CCGCGG	1 cut(s)	72
SalI	GTCGAC	1 cut(s)	31
SaqAI	TTAA	3 cut(s)	225, 234, 426
SatI	GCNGC	2 cut(s)	9, 363
Sau3AI	GATC	3 cut(s)	169, 411, 418
SchI	GAGTC	1 cut(s)	512
ScrFI	CCNGG	1 cut(s)	210
SduI	GDGCHC	3 cut(s)	67, 178, 482
SetI	ASST	8 cut(s)	38, 234, 303, 335, 367, 449, 482, 502
SfaNI	GCATC	1 cut(s)	20
SfcI	CTRYAG	2 cut(s)	473, 517
Sfr274I	CTCGAG	1 cut(s)	164
Sfr303I	CCGCGG	1 cut(s)	72
SgrBI	CCGCGG	1 cut(s)	72
SgrDI	CGTCGACG	1 cut(s)	31
SlaI	CTCGAG	1 cut(s)	164
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
Sse9I	AATT	2 cut(s)	215, 427
SsiI	CCGC	5 cut(s)	60, 69, 71, 135, 160
SstI	GAGCTC	1 cut(s)	482
StyD4I	CCNGG	1 cut(s)	208
TaiI	ACGT	1 cut(s)	38
TaqI	TCGA	4 cut(s)	32, 165, 189, 533
TasI	AATT	2 cut(s)	215, 427
TfiI	GAWTC	1 cut(s)	113
Tru1I	TTAA	3 cut(s)	225, 234, 426
Tru9I	TTAA	3 cut(s)	225, 234, 426
TscAI	CASTG	1 cut(s)	490
TseI	GCWGC	2 cut(s)	8, 362
TspDTI	ATGAA	1 cut(s)	504
TspGWI	ACGGA	1 cut(s)	192
TspRI	CASTG	1 cut(s)	490
XhoI	CTCGAG	1 cut(s)	164
XmiI	GTMKAC	1 cut(s)	32
XmnI	GAANNNNTTC	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.