Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001483

Physical Location & Seq

Genomic Coordinates Forward (+)

17480825 .. 17485490

Gene Structure 4666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG166500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGAGTTCCAATACGGCGCCGTCCAGCTCAGCAGGCGCTGGATCTGCCGATTCAGCAGCTACCAGGAGGTCCAAGCGGCCCAAATATTCCAGATTTACTCAGCAGGAACTTCCAGCATGCAAGCCAATTCTCACGCCAAAATGGGTCATCTCAGCATTCATGCTCGTTGCAATCGTCTTCATTCCCATCGGAGTTGCTACCCTATTTGCTTCCCGAGATGTTGTTGAAATTGTTGATCGATATGAAACGGAGTGCATACCACTGTCCTCTAGGAATGATAAGGTCAAATACATCCAAACCCCAGGAAATAAAACATGCAGCAGAACTCTGACGGTAAAAAAACACATGAAGAAGCCTATATATGTATATTACCAGCTTGATAATTTCTATCAGAATCATCGCAGGTATGTTAAGAGCCGAAGTGATAAACAGTTGAAAGATCCAAACTCTGCAAATACAGTGGCTGATTGTAAGCCTGAAGACAAGACAAATGGTGCATCTATTGTACCATGTGGGCTCATAGCTTGGAGTTTGTTTAATGACACTTATACATTTTCCCGCAACCAAAGCGAGCCATTGCCGGTGAACAAGAAGGGTATTTCATGGAAGAGTGACAGGGAGCACAAATTTGGCAAAAAGGTCTTTCCTACAAACTTTCAGAATTCAACTCTTAAAGGTGGTGCGACTCTCAATCCATTGATTCCATTGAGTGAGCAGGAGGACCTCATTGTTTGGATGAGAACTGCTGCATTGCCAACATTCAGGAAATTATATGGGAAGATAGAGGTGGATCTTCAGCAAAATGATGTCATACATGTGACATTGGACAACAATTACAACACATACAGTTTTAGTGGAAAAAAGAAGCTCGTACTTTCTACCACTAGTTGGCTTGGTGGCAGGAATGACTTCCTTGGCATTGCTTATCTCACTGTTGGCGGGTTGTGCTTCTTTCTGGCGATGGCTTTCACAATTGTATATCTTGTTAAACCAAGGCAACTTGGAGATCCTTCCTATTTGTCATGGAACAGAAATCCAGGAGGGCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0005789 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0008150 GO:0010008 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0031090 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0033036 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0071702 GO:0071944 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDC50

Protein Analysis

349

Amino Acids

39.22

Weight (kDa)

9.67

Isoelectric Point (pI)

37.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDC50	PF03381	68 - 333	5.7e-93	LEM3 (ligand-effect modulator 3) family / CDC50 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001483)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16360 AT1G16360 AT1G16360 AT1G16360 AT1G16360 AT1G54320 AT1G79450 AT1G79450 AT3G12740
fragaria_vesca	FvH4_1g27280 FvH4_1g27280 FvH4_1g27280 FvH4_1g27280 FvH4_1g27280 FvH4_1g27280 FvH4_3g14090
malus_domestica	MD05G1238200.v1.1 MD09G1280100.v1.1 MD10G1216500.v1.1 MD17G1286800.v1.1
prunus_persica	Prupe.3G014200_v2.0.a1 Prupe.3G014200_v2.0.a1 Prupe.3G014200_v2.0.a1 Prupe.4G128200_v2.0.a1 Prupe.4G128200_v2.0.a1
pyrus_communis	pycom05g21420 pycom09g18820 pycom17g27020
rosa_chinensis	RchiOBHm_Chr3g0488711 RchiOBHm_Chr5g0023401
rosa_laevigata	RLG00000022929 RLG00000032719
rosa_multiflora	Rmu_sc0000265.1_g000021 Rmu_sc0004629.1_g000005 Rmu_sc0006389.1_g000001
rosa_roxburghii	Rroxscaffold_1G00055650 Rroxscaffold_1G00055940
rosa_rugosa	Rorug03G0240900 Rorug05G0078900
rosa_samantha	Rh3AG289200 Rh3BG326000 Rh3CG323700 Rh3DG322000 Rh5AG165800 Rh5BG165000 Rh5CG179900 Rh5DG166500
rosa_wichuraiana	Rw0G013700 Rw3G025600 Rw5G014920 Rw5G015080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	393
AccB1I	GGYRCC	1 cut(s)	16
AccB7I	CCANNNNNTGG	1 cut(s)	888
AciI	CCGC	3 cut(s)	76, 559, 939
AclWI	GGATC	4 cut(s)	49, 434, 798, 1001
AcsI	RAATTY	2 cut(s)	626, 661
AcuI	CTGAAG	2 cut(s)	498, 779
AcyI	GRCGYC	1 cut(s)	17
AfaI	GTAC	2 cut(s)	507, 873
AfiI	CCNNNNNNNGG	1 cut(s)	888
AflIII	ACRYGT	1 cut(s)	814
AgsI	TTSAA	3 cut(s)	227, 436, 666
AhlI	ACTAGT	1 cut(s)	884
AjnI	CCWGG	3 cut(s)	62, 301, 1036
AluBI	AGCT	5 cut(s)	27, 59, 376, 524, 868
AluI	AGCT	5 cut(s)	27, 59, 376, 524, 868
Alw21I	GWGCWC	1 cut(s)	624
AlwI	GGATC	4 cut(s)	49, 434, 798, 1001
AlwNI	CAGNNNCTG	2 cut(s)	38, 464
Ama87I	CYCGRG	1 cut(s)	213
AoxI	GGCC	1 cut(s)	77
ApeKI	GCWGC	3 cut(s)	56, 318, 746
ApoI	RAATTY	2 cut(s)	626, 661
Asp700I	GAANNNNTTC	1 cut(s)	908
AspLEI	GCGC	2 cut(s)	19, 38
AspS9I	GGNCC	3 cut(s)	69, 78, 721
AsuHPI	GGTGA	1 cut(s)	595
AvaI	CYCGRG	1 cut(s)	213
AvaII	GGWCC	2 cut(s)	69, 721
BaeGI	GKGCMC	1 cut(s)	1047
BanI	GGYRCC	1 cut(s)	16
BanII	GRGCYC	1 cut(s)	519
BbsI	GAAGAC	2 cut(s)	169, 486
Bbv12I	GWGCWC	1 cut(s)	624
BbvI	GCAGC	3 cut(s)	68, 330, 733
BccI	CCATC	2 cut(s)	194, 955
BceAI	ACGGC	2 cut(s)	4, 30
BciT130I	CCWGG	3 cut(s)	64, 303, 1038
BcuI	ACTAGT	1 cut(s)	884
BfaI	CTAG	2 cut(s)	270, 885
BfoI	RGCGCY	2 cut(s)	20, 39
BfuAI	ACCTGC	1 cut(s)	393
BisI	GCNGC	4 cut(s)	57, 77, 319, 747
BlpI	GCTNAGC	1 cut(s)	28
BlsI	GCNGC	4 cut(s)	58, 78, 320, 748
Bme1390I	CCNGG	3 cut(s)	64, 303, 1038
Bme18I	GGWCC	2 cut(s)	69, 721
BmeT110I	CYCGRG	1 cut(s)	213
BmgT120I	GGNCC	3 cut(s)	69, 78, 721
BmiI	GGNNCC	1 cut(s)	18
BmrFI	CCNGG	3 cut(s)	64, 303, 1038
BmsI	GCATC	1 cut(s)	506
BpiI	GAAGAC	2 cut(s)	169, 486
Bpu1102I	GCTNAGC	1 cut(s)	28
Bsa29I	ATCGAT	1 cut(s)	238
BsaHI	GRCGYC	1 cut(s)	17
BsaJI	CCNNGG	3 cut(s)	301, 913, 992
Bsc4I	CCNNNNNNNGG	1 cut(s)	888
Bse118I	RCCGGY	1 cut(s)	580
Bse3DI	GCAATG	3 cut(s)	575, 749, 918
BseBI	CCWGG	3 cut(s)	64, 303, 1038
BseCI	ATCGAT	1 cut(s)	238
BseDI	CCNNGG	3 cut(s)	301, 913, 992
BseGI	GGATG	2 cut(s)	291, 741
BseLI	CCNNNNNNNGG	1 cut(s)	888
BseMI	GCAATG	3 cut(s)	575, 749, 918
BseMII	CTCAG	3 cut(s)	42, 113, 165
BseSI	GKGCMC	1 cut(s)	1047
BseXI	GCAGC	3 cut(s)	68, 330, 733
BshFI	GGCC	1 cut(s)	79
BshNI	GGYRCC	1 cut(s)	16
BshVI	ATCGAT	1 cut(s)	238
BsiHKAI	GWGCWC	1 cut(s)	624
BsiHKCI	CYCGRG	1 cut(s)	213
BsiSI	CCGG	1 cut(s)	581
BslI	CCNNNNNNNGG	1 cut(s)	888
BsmI	GAATGC	1 cut(s)	155
BsnI	GGCC	1 cut(s)	79
BsoBI	CYCGRG	1 cut(s)	213
Bsp1286I	GDGCHC	3 cut(s)	519, 624, 1047
Bsp143I	GATC	5 cut(s)	41, 235, 439, 790, 1006
Bsp1720I	GCTNAGC	1 cut(s)	28
BspACI	CCGC	3 cut(s)	76, 559, 939
BspANI	GGCC	1 cut(s)	79
BspCNI	CTCAG	3 cut(s)	41, 112, 164
BspDI	ATCGAT	1 cut(s)	238
BspLI	GGNNCC	1 cut(s)	18
BspMI	ACCTGC	1 cut(s)	393
BspPI	GGATC	4 cut(s)	49, 434, 798, 1001
BspT107I	GGYRCC	1 cut(s)	16
BsrDI	GCAATG	3 cut(s)	575, 749, 918
BsrFI	RCCGGY	1 cut(s)	580
BssAI	RCCGGY	1 cut(s)	580
BssECI	CCNNGG	3 cut(s)	301, 913, 992
BssMI	GATC	5 cut(s)	41, 235, 439, 790, 1006
BssNI	GRCGYC	1 cut(s)	17
BssT1I	CCWWGG	2 cut(s)	913, 992
Bst2UI	CCWGG	3 cut(s)	64, 303, 1038
Bst4CI	ACNGT	6 cut(s)	264, 334, 432, 460, 848, 934
Bst6I	CTCTTC	1 cut(s)	602
BstACI	GRCGYC	1 cut(s)	17
BstC8I	GCNNGC	4 cut(s)	34, 118, 122, 572
BstDEI	CTNAG	3 cut(s)	28, 99, 151
BstF5I	GGATG	2 cut(s)	291, 741
BstH2I	RGCGCY	2 cut(s)	20, 39
BstHHI	GCGC	2 cut(s)	19, 38
BstKTI	GATC	5 cut(s)	44, 238, 442, 793, 1009
BstMBI	GATC	5 cut(s)	41, 235, 439, 790, 1006
BstMWI	GCNNNNNNNGC	5 cut(s)	33, 44, 53, 567, 945
BstNI	CCWGG	3 cut(s)	64, 303, 1038
BstNSI	RCATGY	3 cut(s)	120, 318, 818
BstSCI	CCNGG	3 cut(s)	62, 301, 1036
BstSLI	GKGCMC	1 cut(s)	1047
BstV1I	GCAGC	3 cut(s)	68, 330, 733
BstV2I	GAAGAC	2 cut(s)	169, 486
BstX2I	RGATCY	4 cut(s)	41, 439, 790, 1006
BstYI	RGATCY	4 cut(s)	41, 439, 790, 1006
Bsu15I	ATCGAT	1 cut(s)	238
BsuRI	GGCC	1 cut(s)	79
BsuTUI	ATCGAT	1 cut(s)	238
BtgZI	GCGATG	2 cut(s)	383, 974
BtsCI	GGATG	2 cut(s)	291, 741
BtsIMutI	CAGTG	3 cut(s)	260, 465, 930
BveI	ACCTGC	1 cut(s)	393
Cac8I	GCNNGC	4 cut(s)	34, 118, 122, 572
CaiI	CAGNNNCTG	2 cut(s)	38, 464
CfoI	GCGC	2 cut(s)	19, 38
Cfr10I	RCCGGY	1 cut(s)	580
Cfr13I	GGNCC	3 cut(s)	69, 78, 721
ClaI	ATCGAT	1 cut(s)	238
Csp6I	GTAC	2 cut(s)	506, 872
CspCI	CAANNNNNGTGG	2 cut(s)	441, 476
CviAII	CATG	8 cut(s)	117, 160, 315, 346, 510, 603, 815, 1023
CviQI	GTAC	2 cut(s)	506, 872
DdeI	CTNAG	3 cut(s)	28, 99, 151
DinI	GGCGCC	1 cut(s)	18
DpnI	GATC	5 cut(s)	43, 237, 441, 792, 1008
DpnII	GATC	5 cut(s)	41, 235, 439, 790, 1006
Eam1104I	CTCTTC	1 cut(s)	602
EarI	CTCTTC	1 cut(s)	602
Eco130I	CCWWGG	2 cut(s)	913, 992
Eco24I	GRGCYC	1 cut(s)	519
Eco47I	GGWCC	2 cut(s)	69, 721
Eco57I	CTGAAG	2 cut(s)	498, 779
Eco88I	CYCGRG	1 cut(s)	213
EcoO109I	RGGNCCY	1 cut(s)	721
EcoRI	GAATTC	1 cut(s)	661
EcoRII	CCWGG	3 cut(s)	62, 301, 1036
EcoT14I	CCWWGG	2 cut(s)	913, 992
EcoT38I	GRGCYC	1 cut(s)	519
EgeI	GGCGCC	1 cut(s)	18
EheI	GGCGCC	1 cut(s)	18
ErhI	CCWWGG	2 cut(s)	913, 992
FaeI	CATG	8 cut(s)	120, 163, 318, 349, 513, 606, 818, 1026
FatI	CATG	8 cut(s)	116, 159, 314, 345, 509, 602, 814, 1022
FauI	CCCGC	2 cut(s)	566, 932
Fnu4HI	GCNGC	4 cut(s)	57, 77, 319, 747
FokI	GGATG	2 cut(s)	278, 748
FriOI	GRGCYC	1 cut(s)	519
Fsp4HI	GCNGC	4 cut(s)	57, 77, 319, 747
FspBI	CTAG	2 cut(s)	270, 885
GlaI	GCGC	2 cut(s)	18, 37
GluI	GCNGC	4 cut(s)	57, 77, 319, 747
HaeII	RGCGCY	2 cut(s)	20, 39
HaeIII	GGCC	1 cut(s)	79
HapII	CCGG	1 cut(s)	581
HhaI	GCGC	2 cut(s)	19, 38
Hin1I	GRCGYC	1 cut(s)	17
Hin1II	CATG	8 cut(s)	120, 163, 318, 349, 513, 606, 818, 1026
Hin6I	GCGC	2 cut(s)	17, 36
HinP1I	GCGC	2 cut(s)	17, 36
HinfI	GANTC	4 cut(s)	50, 394, 685, 700
HpaII	CCGG	1 cut(s)	581
HphI	GGTGA	1 cut(s)	595
Hpy166II	GTNNAC	1 cut(s)	586
Hpy188I	TCNGA	4 cut(s)	191, 330, 393, 660
Hpy188III	TCNNGA	3 cut(s)	90, 213, 763
Hpy8I	GTNNAC	1 cut(s)	586
HpyAV	CCTTC	2 cut(s)	586, 1020
HpyCH4III	ACNGT	6 cut(s)	264, 334, 432, 460, 848, 934
HpyCH4V	TGCA	7 cut(s)	120, 170, 255, 318, 452, 497, 749
HpyF10VI	GCNNNNNNNGC	5 cut(s)	33, 44, 53, 567, 945
HpyF3I	CTNAG	3 cut(s)	28, 99, 151
Hsp92I	GRCGYC	1 cut(s)	17
Hsp92II	CATG	8 cut(s)	120, 163, 318, 349, 513, 606, 818, 1026
HspAI	GCGC	2 cut(s)	17, 36
KasI	GGCGCC	1 cut(s)	16
Kzo9I	GATC	5 cut(s)	41, 235, 439, 790, 1006
LmnI	GCTCC	1 cut(s)	619
Lsp1109I	GCAGC	3 cut(s)	68, 330, 733
LweI	GCATC	1 cut(s)	506
MaeI	CTAG	2 cut(s)	270, 885
MaeIII	GTNAC	2 cut(s)	611, 817
MalI	GATC	5 cut(s)	43, 237, 441, 792, 1008
MboI	GATC	5 cut(s)	41, 235, 439, 790, 1006
MboII	GAAGA	6 cut(s)	169, 361, 491, 619, 785, 790
MfeI	CAATTG	1 cut(s)	972
MflI	RGATCY	4 cut(s)	41, 439, 790, 1006
MhlI	GDGCHC	3 cut(s)	519, 624, 1047
MluCI	AATT	8 cut(s)	126, 228, 382, 626, 661, 767, 832, 972
Mly113I	GGCGCC	1 cut(s)	17
MlyI	GAGTC	1 cut(s)	679
MnlI	CCTC	6 cut(s)	60, 277, 712, 734, 778, 1034
MroXI	GAANNNNTTC	1 cut(s)	908
MseI	TTAA	4 cut(s)	411, 537, 672, 987
MslI	CAYNNNNRTG	1 cut(s)	815
MspI	CCGG	1 cut(s)	581
MspR9I	CCNGG	3 cut(s)	64, 303, 1038
MunI	CAATTG	1 cut(s)	972
Mva1269I	GAATGC	1 cut(s)	155
MvaI	CCWGG	3 cut(s)	64, 303, 1038
MwoI	GCNNNNNNNGC	5 cut(s)	33, 44, 53, 567, 945
NarI	GGCGCC	1 cut(s)	17
NdeII	GATC	5 cut(s)	41, 235, 439, 790, 1006
NlaIII	CATG	8 cut(s)	120, 163, 318, 349, 513, 606, 818, 1026
NlaIV	GGNNCC	1 cut(s)	18
NmuCI	GTSAC	2 cut(s)	611, 817
NspI	RCATGY	3 cut(s)	120, 318, 818
PaeI	GCATGC	1 cut(s)	120
PciI	ACATGT	1 cut(s)	814
PcsI	WCGNNNNNNNCGW	1 cut(s)	171
PctI	GAATGC	1 cut(s)	155
PdmI	GAANNNNTTC	1 cut(s)	908
PfeI	GAWTC	3 cut(s)	50, 394, 700
PflMI	CCANNNNNTGG	1 cut(s)	888
PfoI	TCCNGGA	1 cut(s)	1036
PkrI	GCNGC	4 cut(s)	58, 78, 320, 748
PleI	GAGTC	1 cut(s)	679
PluTI	GGCGCC	1 cut(s)	20
PpsI	GAGTC	1 cut(s)	679
PpuMI	RGGWCCY	1 cut(s)	721
PscI	ACATGT	1 cut(s)	814
Psp5II	RGGWCCY	1 cut(s)	721
Psp6I	CCWGG	3 cut(s)	62, 301, 1036
PspGI	CCWGG	3 cut(s)	62, 301, 1036
PspN4I	GGNNCC	1 cut(s)	18
PspPI	GGNCC	3 cut(s)	69, 78, 721
PspPPI	RGGWCCY	1 cut(s)	721
PstNI	CAGNNNCTG	2 cut(s)	38, 464
PsuI	RGATCY	4 cut(s)	41, 439, 790, 1006
RsaI	GTAC	2 cut(s)	507, 873
RsaNI	GTAC	2 cut(s)	506, 872
RseI	CAYNNNNRTG	1 cut(s)	815
SaqAI	TTAA	4 cut(s)	411, 537, 672, 987
SatI	GCNGC	4 cut(s)	57, 77, 319, 747
Sau3AI	GATC	5 cut(s)	41, 235, 439, 790, 1006
Sau96I	GGNCC	3 cut(s)	69, 78, 721
SchI	GAGTC	1 cut(s)	679
ScrFI	CCNGG	3 cut(s)	64, 303, 1038
SduI	GDGCHC	3 cut(s)	519, 624, 1047
SfaNI	GCATC	1 cut(s)	506
SfoI	GGCGCC	1 cut(s)	18
SinI	GGWCC	2 cut(s)	69, 721
SmiMI	CAYNNNNRTG	1 cut(s)	815
SpeI	ACTAGT	1 cut(s)	884
SphI	GCATGC	1 cut(s)	120
Sse9I	AATT	8 cut(s)	126, 228, 382, 626, 661, 767, 832, 972
SsiI	CCGC	3 cut(s)	76, 559, 939
SspDI	GGCGCC	1 cut(s)	16
SspI	AATATT	1 cut(s)	86
SspMI	CTAG	2 cut(s)	270, 885
StyD4I	CCNGG	3 cut(s)	62, 301, 1036
StyI	CCWWGG	2 cut(s)	913, 992
TaaI	ACNGT	6 cut(s)	264, 334, 432, 460, 848, 934
TaqI	TCGA	1 cut(s)	238
TasI	AATT	8 cut(s)	126, 228, 382, 626, 661, 767, 832, 972
TauI	GCSGC	1 cut(s)	79
TfiI	GAWTC	3 cut(s)	50, 394, 700
Tru1I	TTAA	4 cut(s)	411, 537, 672, 987
Tru9I	TTAA	4 cut(s)	411, 537, 672, 987
TscAI	CASTG	3 cut(s)	267, 465, 937
TseFI	GTSAC	2 cut(s)	611, 817
TseI	GCWGC	3 cut(s)	56, 318, 746
Tsp45I	GTSAC	2 cut(s)	611, 817
TspDTI	ATGAA	5 cut(s)	148, 169, 258, 362, 591
TspGWI	ACGGA	1 cut(s)	263
TspRI	CASTG	3 cut(s)	267, 465, 937
Van91I	CCANNNNNTGG	1 cut(s)	888
VpaK11BI	GGWCC	2 cut(s)	69, 721
XapI	RAATTY	2 cut(s)	626, 661
XceI	RCATGY	3 cut(s)	120, 318, 818
XmnI	GAANNNNTTC	1 cut(s)	908
XspI	CTAG	2 cut(s)	270, 885

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.