Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001483

Physical Location & Seq

Genomic Coordinates Forward (+)

17849872 .. 17854724

Gene Structure 4853 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG165800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGAGTTCCAATACGGCGCCGTCCAGCTCAGCAGGCGCTGGATCTGCCGATTCAGCAGCTACCAGGAGGTCCAAGCGCCCCAAATATTCCAGATTTACTCAGCAGGAACTTCCAGCATGCAAGCCAATTCTCACACCAAAATGGGTCATCTCAGCATTCATGCTCGTTGCAATCGTCTTCATTCCCATCGGAGTTGCTACCCTATTTGCTTCCCGAGATGTTGTTGAAATTGTTGATCGATATGAAACGGAGTGCATACCACCGTCCTCTAGGAATGATATGGTCAAATACATCCAAACCCCAGGAAATAAAACATGCAGCAGAACTCTGACGGTAAAAAAACACATGAAGCAGCCTATATATGTATATTACCAGCTTGATAATTTCTATCAGAATCATCGCAGGTATGTTAAGAGCCGAAGTGATAAACAGTTGAAAGATCCAAACTCTGCAAATACAGTGACTGATTGTAAGCCTGAAGACAAGACAACAAATGGTGTACCTATTGTACCATGTGGGCTCATAGCTTGGAGTTTGTTTAATGACACTTATAAATTTTCCCGCAACCAAAGCGAGCCATTGCCGGTGAACAAGAAGCATATTTCATGGAAGAGTGACAGGGAGCACAAATTTGGCAAAAAGGTCTTTCCTACAAACTTTCAGAATTCAACTCTTAAAGGTGGTGCGACTCTCGATCCATTGATTCCATTGAGTGCTCAGGAGGACCTCATTGTTTGGATGAGAACTGCTGCATTGCCAACATTCAGGAAATTATATGGGAAGATAGAGGTGGATCTTCAGCAAAATGATGTCATACATGTGACATTGGACAACAATTACAACACATACAGTTTTAGTGGAAAAAAGAAGCTCGTACTTTCTACCACTAGTTGGCTTGGTGGCAGGAATGACTTCCTTGGCATTGCTTATCTCACTGTTGGCGGGTTGTGCTTCTTTCTGGCGATGGCTTTCACAATTGTATATCTTGTTAAACCAAGGCAACTTGGAGATCCTTCCTATTTGTCATGGAACAGAAATCCAGGAGGGCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0005789 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0008150 GO:0010008 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0031090 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0033036 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0071702 GO:0071944 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDC50

Protein Analysis

350

Amino Acids

39.43

Weight (kDa)

9.64

Isoelectric Point (pI)

41.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDC50	PF03381	68 - 334	7e-93	LEM3 (ligand-effect modulator 3) family / CDC50 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001483)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16360 AT1G16360 AT1G16360 AT1G16360 AT1G16360 AT1G54320 AT1G79450 AT1G79450 AT3G12740
fragaria_vesca	FvH4_1g27280 FvH4_1g27280 FvH4_1g27280 FvH4_1g27280 FvH4_1g27280 FvH4_1g27280 FvH4_3g14090
malus_domestica	MD05G1238200.v1.1 MD09G1280100.v1.1 MD10G1216500.v1.1 MD17G1286800.v1.1
prunus_persica	Prupe.3G014200_v2.0.a1 Prupe.3G014200_v2.0.a1 Prupe.3G014200_v2.0.a1 Prupe.4G128200_v2.0.a1 Prupe.4G128200_v2.0.a1
pyrus_communis	pycom05g21420 pycom09g18820 pycom17g27020
rosa_chinensis	RchiOBHm_Chr3g0488711 RchiOBHm_Chr5g0023401
rosa_laevigata	RLG00000022929 RLG00000032719
rosa_multiflora	Rmu_sc0000265.1_g000021 Rmu_sc0004629.1_g000005 Rmu_sc0006389.1_g000001
rosa_roxburghii	Rroxscaffold_1G00055650 Rroxscaffold_1G00055940
rosa_rugosa	Rorug03G0240900 Rorug05G0078900
rosa_samantha	Rh3AG289200 Rh3BG326000 Rh3CG323700 Rh3DG322000 Rh5AG165800 Rh5BG165000 Rh5CG179900 Rh5DG166500
rosa_wichuraiana	Rw0G013700 Rw3G025600 Rw5G014920 Rw5G015080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	552
Acc36I	ACCTGC	1 cut(s)	393
AccB1I	GGYRCC	1 cut(s)	16
AccB7I	CCANNNNNTGG	1 cut(s)	891
AciI	CCGC	2 cut(s)	562, 942
AclWI	GGATC	5 cut(s)	49, 434, 689, 801, 1004
AcsI	RAATTY	3 cut(s)	554, 629, 664
AcuI	CTGAAG	2 cut(s)	498, 782
AcyI	GRCGYC	1 cut(s)	17
AfaI	GTAC	3 cut(s)	501, 510, 876
AfiI	CCNNNNNNNGG	1 cut(s)	891
AflIII	ACRYGT	1 cut(s)	817
AgsI	TTSAA	3 cut(s)	227, 436, 669
AhlI	ACTAGT	1 cut(s)	887
AjnI	CCWGG	3 cut(s)	62, 301, 1039
AluBI	AGCT	5 cut(s)	27, 59, 376, 527, 871
AluI	AGCT	5 cut(s)	27, 59, 376, 527, 871
Alw21I	GWGCWC	2 cut(s)	627, 718
AlwI	GGATC	5 cut(s)	49, 434, 689, 801, 1004
AlwNI	CAGNNNCTG	2 cut(s)	38, 464
Ama87I	CYCGRG	1 cut(s)	213
ApeKI	GCWGC	4 cut(s)	56, 318, 352, 749
ApoI	RAATTY	3 cut(s)	554, 629, 664
Asp700I	GAANNNNTTC	1 cut(s)	911
AspLEI	GCGC	3 cut(s)	19, 38, 78
AspS9I	GGNCC	2 cut(s)	69, 724
AsuHPI	GGTGA	1 cut(s)	598
AvaI	CYCGRG	1 cut(s)	213
AvaII	GGWCC	2 cut(s)	69, 724
BaeGI	GKGCMC	1 cut(s)	1050
BanI	GGYRCC	1 cut(s)	16
BanII	GRGCYC	1 cut(s)	522
BbsI	GAAGAC	2 cut(s)	169, 486
Bbv12I	GWGCWC	2 cut(s)	627, 718
BbvI	GCAGC	4 cut(s)	68, 330, 364, 736
BccI	CCATC	2 cut(s)	194, 958
BceAI	ACGGC	2 cut(s)	4, 30
BciT130I	CCWGG	3 cut(s)	64, 303, 1041
BcuI	ACTAGT	1 cut(s)	887
BfaI	CTAG	2 cut(s)	270, 888
BfoI	RGCGCY	3 cut(s)	20, 39, 79
BfuAI	ACCTGC	1 cut(s)	393
BisI	GCNGC	4 cut(s)	57, 319, 353, 750
BlpI	GCTNAGC	1 cut(s)	28
BlsI	GCNGC	4 cut(s)	58, 320, 354, 751
Bme1390I	CCNGG	3 cut(s)	64, 303, 1041
Bme18I	GGWCC	2 cut(s)	69, 724
BmeT110I	CYCGRG	1 cut(s)	213
BmgT120I	GGNCC	2 cut(s)	69, 724
BmiI	GGNNCC	1 cut(s)	18
BmrFI	CCNGG	3 cut(s)	64, 303, 1041
BpiI	GAAGAC	2 cut(s)	169, 486
Bpu10I	CCTNAGC	1 cut(s)	717
Bpu1102I	GCTNAGC	1 cut(s)	28
Bsa29I	ATCGAT	1 cut(s)	238
BsaHI	GRCGYC	1 cut(s)	17
BsaJI	CCNNGG	3 cut(s)	301, 916, 995
Bsc4I	CCNNNNNNNGG	1 cut(s)	891
Bse118I	RCCGGY	1 cut(s)	583
Bse3DI	GCAATG	3 cut(s)	578, 752, 921
BseBI	CCWGG	3 cut(s)	64, 303, 1041
BseCI	ATCGAT	1 cut(s)	238
BseDI	CCNNGG	3 cut(s)	301, 916, 995
BseGI	GGATG	2 cut(s)	291, 744
BseLI	CCNNNNNNNGG	1 cut(s)	891
BseMI	GCAATG	3 cut(s)	578, 752, 921
BseMII	CTCAG	4 cut(s)	42, 113, 165, 731
BseSI	GKGCMC	1 cut(s)	1050
BseXI	GCAGC	4 cut(s)	68, 330, 364, 736
BshNI	GGYRCC	1 cut(s)	16
BshVI	ATCGAT	1 cut(s)	238
BsiHKAI	GWGCWC	2 cut(s)	627, 718
BsiHKCI	CYCGRG	1 cut(s)	213
BsiSI	CCGG	1 cut(s)	584
BslI	CCNNNNNNNGG	1 cut(s)	891
BsmI	GAATGC	1 cut(s)	155
BsoBI	CYCGRG	1 cut(s)	213
Bsp1286I	GDGCHC	4 cut(s)	522, 627, 718, 1050
Bsp143I	GATC	6 cut(s)	41, 235, 439, 694, 793, 1009
Bsp1720I	GCTNAGC	1 cut(s)	28
BspACI	CCGC	2 cut(s)	562, 942
BspCNI	CTCAG	4 cut(s)	41, 112, 164, 730
BspDI	ATCGAT	1 cut(s)	238
BspLI	GGNNCC	1 cut(s)	18
BspMI	ACCTGC	1 cut(s)	393
BspPI	GGATC	5 cut(s)	49, 434, 689, 801, 1004
BspT107I	GGYRCC	1 cut(s)	16
BsrDI	GCAATG	3 cut(s)	578, 752, 921
BsrFI	RCCGGY	1 cut(s)	583
BssAI	RCCGGY	1 cut(s)	583
BssECI	CCNNGG	3 cut(s)	301, 916, 995
BssMI	GATC	6 cut(s)	41, 235, 439, 694, 793, 1009
BssNI	GRCGYC	1 cut(s)	17
BssT1I	CCWWGG	2 cut(s)	916, 995
Bst2UI	CCWGG	3 cut(s)	64, 303, 1041
Bst4CI	ACNGT	6 cut(s)	264, 334, 432, 460, 851, 937
Bst6I	CTCTTC	1 cut(s)	605
BstACI	GRCGYC	1 cut(s)	17
BstC8I	GCNNGC	4 cut(s)	34, 118, 122, 575
BstDEI	CTNAG	4 cut(s)	28, 99, 151, 717
BstF5I	GGATG	2 cut(s)	291, 744
BstH2I	RGCGCY	3 cut(s)	20, 39, 79
BstHHI	GCGC	3 cut(s)	19, 38, 78
BstKTI	GATC	6 cut(s)	44, 238, 442, 697, 796, 1012
BstMBI	GATC	6 cut(s)	41, 235, 439, 694, 793, 1009
BstMWI	GCNNNNNNNGC	5 cut(s)	33, 44, 53, 570, 948
BstNI	CCWGG	3 cut(s)	64, 303, 1041
BstNSI	RCATGY	3 cut(s)	120, 318, 821
BstSCI	CCNGG	3 cut(s)	62, 301, 1039
BstSLI	GKGCMC	1 cut(s)	1050
BstV1I	GCAGC	4 cut(s)	68, 330, 364, 736
BstV2I	GAAGAC	2 cut(s)	169, 486
BstX2I	RGATCY	4 cut(s)	41, 439, 793, 1009
BstYI	RGATCY	4 cut(s)	41, 439, 793, 1009
Bsu15I	ATCGAT	1 cut(s)	238
BsuTUI	ATCGAT	1 cut(s)	238
BtgZI	GCGATG	2 cut(s)	383, 977
BtsCI	GGATG	2 cut(s)	291, 744
BtsIMutI	CAGTG	2 cut(s)	465, 933
BveI	ACCTGC	1 cut(s)	393
Cac8I	GCNNGC	4 cut(s)	34, 118, 122, 575
CaiI	CAGNNNCTG	2 cut(s)	38, 464
CfoI	GCGC	3 cut(s)	19, 38, 78
Cfr10I	RCCGGY	1 cut(s)	583
Cfr13I	GGNCC	2 cut(s)	69, 724
ClaI	ATCGAT	1 cut(s)	238
Csp6I	GTAC	3 cut(s)	500, 509, 875
CviAII	CATG	8 cut(s)	117, 160, 315, 346, 513, 606, 818, 1026
CviQI	GTAC	3 cut(s)	500, 509, 875
DdeI	CTNAG	4 cut(s)	28, 99, 151, 717
DinI	GGCGCC	1 cut(s)	18
DpnI	GATC	6 cut(s)	43, 237, 441, 696, 795, 1011
DpnII	GATC	6 cut(s)	41, 235, 439, 694, 793, 1009
Eam1104I	CTCTTC	1 cut(s)	605
EarI	CTCTTC	1 cut(s)	605
Eco130I	CCWWGG	2 cut(s)	916, 995
Eco24I	GRGCYC	1 cut(s)	522
Eco47I	GGWCC	2 cut(s)	69, 724
Eco57I	CTGAAG	2 cut(s)	498, 782
Eco88I	CYCGRG	1 cut(s)	213
EcoO109I	RGGNCCY	1 cut(s)	724
EcoRI	GAATTC	1 cut(s)	664
EcoRII	CCWGG	3 cut(s)	62, 301, 1039
EcoT14I	CCWWGG	2 cut(s)	916, 995
EcoT38I	GRGCYC	1 cut(s)	522
EgeI	GGCGCC	1 cut(s)	18
EheI	GGCGCC	1 cut(s)	18
ErhI	CCWWGG	2 cut(s)	916, 995
FaeI	CATG	8 cut(s)	120, 163, 318, 349, 516, 609, 821, 1029
FatI	CATG	8 cut(s)	116, 159, 314, 345, 512, 605, 817, 1025
FauI	CCCGC	2 cut(s)	569, 935
Fnu4HI	GCNGC	4 cut(s)	57, 319, 353, 750
FokI	GGATG	2 cut(s)	278, 751
FriOI	GRGCYC	1 cut(s)	522
Fsp4HI	GCNGC	4 cut(s)	57, 319, 353, 750
FspBI	CTAG	2 cut(s)	270, 888
GlaI	GCGC	3 cut(s)	18, 37, 77
GluI	GCNGC	4 cut(s)	57, 319, 353, 750
HaeII	RGCGCY	3 cut(s)	20, 39, 79
HapII	CCGG	1 cut(s)	584
HhaI	GCGC	3 cut(s)	19, 38, 78
Hin1I	GRCGYC	1 cut(s)	17
Hin1II	CATG	8 cut(s)	120, 163, 318, 349, 516, 609, 821, 1029
Hin6I	GCGC	3 cut(s)	17, 36, 76
HinP1I	GCGC	3 cut(s)	17, 36, 76
HinfI	GANTC	4 cut(s)	50, 394, 688, 703
HpaII	CCGG	1 cut(s)	584
HphI	GGTGA	1 cut(s)	598
Hpy166II	GTNNAC	2 cut(s)	500, 589
Hpy188I	TCNGA	4 cut(s)	191, 330, 393, 663
Hpy188III	TCNNGA	5 cut(s)	90, 213, 692, 719, 766
Hpy8I	GTNNAC	2 cut(s)	500, 589
HpyAV	CCTTC	1 cut(s)	1023
HpyCH4III	ACNGT	6 cut(s)	264, 334, 432, 460, 851, 937
HpyCH4V	TGCA	6 cut(s)	120, 170, 255, 318, 452, 752
HpyF10VI	GCNNNNNNNGC	5 cut(s)	33, 44, 53, 570, 948
HpyF3I	CTNAG	4 cut(s)	28, 99, 151, 717
Hsp92I	GRCGYC	1 cut(s)	17
Hsp92II	CATG	8 cut(s)	120, 163, 318, 349, 516, 609, 821, 1029
HspAI	GCGC	3 cut(s)	17, 36, 76
KasI	GGCGCC	1 cut(s)	16
Kzo9I	GATC	6 cut(s)	41, 235, 439, 694, 793, 1009
LmnI	GCTCC	1 cut(s)	622
Lsp1109I	GCAGC	4 cut(s)	68, 330, 364, 736
MaeI	CTAG	2 cut(s)	270, 888
MaeIII	GTNAC	3 cut(s)	460, 614, 820
MalI	GATC	6 cut(s)	43, 237, 441, 696, 795, 1011
MboI	GATC	6 cut(s)	41, 235, 439, 694, 793, 1009
MboII	GAAGA	5 cut(s)	169, 491, 622, 788, 793
MfeI	CAATTG	1 cut(s)	975
MflI	RGATCY	4 cut(s)	41, 439, 793, 1009
MhlI	GDGCHC	4 cut(s)	522, 627, 718, 1050
MluCI	AATT	9 cut(s)	126, 228, 382, 554, 629, 664, 770, 835, 975
Mly113I	GGCGCC	1 cut(s)	17
MlyI	GAGTC	1 cut(s)	682
MnlI	CCTC	6 cut(s)	60, 277, 715, 737, 781, 1037
MroXI	GAANNNNTTC	1 cut(s)	911
MseI	TTAA	4 cut(s)	411, 540, 675, 990
MslI	CAYNNNNRTG	2 cut(s)	139, 818
MspI	CCGG	1 cut(s)	584
MspR9I	CCNGG	3 cut(s)	64, 303, 1041
MunI	CAATTG	1 cut(s)	975
Mva1269I	GAATGC	1 cut(s)	155
MvaI	CCWGG	3 cut(s)	64, 303, 1041
MwoI	GCNNNNNNNGC	5 cut(s)	33, 44, 53, 570, 948
NarI	GGCGCC	1 cut(s)	17
NdeII	GATC	6 cut(s)	41, 235, 439, 694, 793, 1009
NlaIII	CATG	8 cut(s)	120, 163, 318, 349, 516, 609, 821, 1029
NlaIV	GGNNCC	1 cut(s)	18
NmuCI	GTSAC	3 cut(s)	460, 614, 820
NspI	RCATGY	3 cut(s)	120, 318, 821
PaeI	GCATGC	1 cut(s)	120
PciI	ACATGT	1 cut(s)	817
PcsI	WCGNNNNNNNCGW	1 cut(s)	171
PctI	GAATGC	1 cut(s)	155
PdmI	GAANNNNTTC	1 cut(s)	911
PfeI	GAWTC	3 cut(s)	50, 394, 703
PflMI	CCANNNNNTGG	1 cut(s)	891
PfoI	TCCNGGA	1 cut(s)	1039
PkrI	GCNGC	4 cut(s)	58, 320, 354, 751
PleI	GAGTC	1 cut(s)	682
PluTI	GGCGCC	1 cut(s)	20
PpsI	GAGTC	1 cut(s)	682
PpuMI	RGGWCCY	1 cut(s)	724
PscI	ACATGT	1 cut(s)	817
PsiI	TTATAA	1 cut(s)	552
Psp5II	RGGWCCY	1 cut(s)	724
Psp6I	CCWGG	3 cut(s)	62, 301, 1039
PspGI	CCWGG	3 cut(s)	62, 301, 1039
PspN4I	GGNNCC	1 cut(s)	18
PspPI	GGNCC	2 cut(s)	69, 724
PspPPI	RGGWCCY	1 cut(s)	724
PstNI	CAGNNNCTG	2 cut(s)	38, 464
PsuI	RGATCY	4 cut(s)	41, 439, 793, 1009
RsaI	GTAC	3 cut(s)	501, 510, 876
RsaNI	GTAC	3 cut(s)	500, 509, 875
RseI	CAYNNNNRTG	2 cut(s)	139, 818
SaqAI	TTAA	4 cut(s)	411, 540, 675, 990
SatI	GCNGC	4 cut(s)	57, 319, 353, 750
Sau3AI	GATC	6 cut(s)	41, 235, 439, 694, 793, 1009
Sau96I	GGNCC	2 cut(s)	69, 724
SchI	GAGTC	1 cut(s)	682
ScrFI	CCNGG	3 cut(s)	64, 303, 1041
SduI	GDGCHC	4 cut(s)	522, 627, 718, 1050
SfoI	GGCGCC	1 cut(s)	18
SinI	GGWCC	2 cut(s)	69, 724
SmiMI	CAYNNNNRTG	2 cut(s)	139, 818
SpeI	ACTAGT	1 cut(s)	887
SphI	GCATGC	1 cut(s)	120
Sse9I	AATT	9 cut(s)	126, 228, 382, 554, 629, 664, 770, 835, 975
SsiI	CCGC	2 cut(s)	562, 942
SspDI	GGCGCC	1 cut(s)	16
SspI	AATATT	1 cut(s)	86
SspMI	CTAG	2 cut(s)	270, 888
StyD4I	CCNGG	3 cut(s)	62, 301, 1039
StyI	CCWWGG	2 cut(s)	916, 995
TaaI	ACNGT	6 cut(s)	264, 334, 432, 460, 851, 937
TaqI	TCGA	2 cut(s)	238, 693
TasI	AATT	9 cut(s)	126, 228, 382, 554, 629, 664, 770, 835, 975
TfiI	GAWTC	3 cut(s)	50, 394, 703
Tru1I	TTAA	4 cut(s)	411, 540, 675, 990
Tru9I	TTAA	4 cut(s)	411, 540, 675, 990
TscAI	CASTG	2 cut(s)	465, 940
TseFI	GTSAC	3 cut(s)	460, 614, 820
TseI	GCWGC	4 cut(s)	56, 318, 352, 749
Tsp45I	GTSAC	3 cut(s)	460, 614, 820
TspDTI	ATGAA	5 cut(s)	148, 169, 258, 362, 594
TspGWI	ACGGA	1 cut(s)	263
TspRI	CASTG	2 cut(s)	465, 940
Van91I	CCANNNNNTGG	1 cut(s)	891
VpaK11BI	GGWCC	2 cut(s)	69, 724
XapI	RAATTY	3 cut(s)	554, 629, 664
XceI	RCATGY	3 cut(s)	120, 318, 821
XmnI	GAANNNNTTC	1 cut(s)	911
XspI	CTAG	2 cut(s)	270, 888

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.