Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001483

Physical Location & Seq

Genomic Coordinates Forward (+)

18187735 .. 18191516

Gene Structure 3782 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032719

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGAGTTCCAATACGGCGCCGTCCAGCTCAGCAGGCGCTGGATCTGCCGATTCAGCAGCTACCAGGAGGTCCAAGCGGCCCAAATATTCAAGATTTACTCAGCAGGAACTTCCAGCATGCAAGCCAATTCTCACGCCAAAATGGGTAGTATCTGTATACCTGTTAAAATTCCAACTTAACTCTTTCTACACTTCTTGCATACCACTGTCCTCGAGGAATGATATGGTCAAATACATCCAAACCCCAGGAAATAAAACATGCAGCAGAACTCTGACGGTAAAAAAGCACATGAAGCAGCCTATATATGTATATTACCAGCTTGATAATTTCTATCAGAATCATCGCAGGTATGTTAAGAGCCGAAGCGATAAACAGTTGAAAGATCCAAACTCTGCAAATACAGTGACTGATTGTAAGCCTGAAGACAAGACAAATGGTGTACCTATTGTACCATGTGGGCTCATAGCTTGGAGTTTGTTTAATGACACTTACAAATTTTCCCGCAACCAGAGCGAGCCATTGCCGGTGAACAAGAACGGTATTTCATGGAAGAGTGACAGGGAGCACAAATTTGGCAAAGAGGTCTTTCCTACAAACTTTCAGAATTCAACTCTTAAAGGTGGTGCGACTCTTGATCCATCGATTCCATTGAGTAAGCAGGAGGACCTCATTGTTTGGATGAGAACTGCTGCATTGCCAACATTCAGGAAATTATATGGGAAGATAGAGGTGGATCTTCAGCAAAATGATGTCATACATGTGACATTGGACAACAATTACAACACATACAGTTTTAGTGGAAAAAAGAAGCTCGTACTTTCTACCACTAGTTGGCTTGGTGGCAGGAATGACTTCCTTGGCATTGCTTATCTCACTGTTGGCGGGTTGTGCTTCTTTCTGGCGATGGCTTTCACAATTGTATATCTTGTTAAACCAAGGCAACTTGGAGATCCTTCATATTTGTCATGGAACAGAAATCCAGGAGGGCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0005789 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0008150 GO:0010008 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0031090 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0033036 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0071702 GO:0071944 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDC50

Protein Analysis

331

Amino Acids

37.3

Weight (kDa)

9.71

Isoelectric Point (pI)

41.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDC50	PF03381	60 - 314	2.3e-90	LEM3 (ligand-effect modulator 3) family / CDC50 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001483)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16360 AT1G16360 AT1G16360 AT1G16360 AT1G16360 AT1G54320 AT1G79450 AT1G79450 AT3G12740
fragaria_vesca	FvH4_1g27280 FvH4_1g27280 FvH4_1g27280 FvH4_1g27280 FvH4_1g27280 FvH4_1g27280 FvH4_3g14090
malus_domestica	MD05G1238200.v1.1 MD09G1280100.v1.1 MD10G1216500.v1.1 MD17G1286800.v1.1
prunus_persica	Prupe.3G014200_v2.0.a1 Prupe.3G014200_v2.0.a1 Prupe.3G014200_v2.0.a1 Prupe.4G128200_v2.0.a1 Prupe.4G128200_v2.0.a1
pyrus_communis	pycom05g21420 pycom09g18820 pycom17g27020
rosa_chinensis	RchiOBHm_Chr3g0488711 RchiOBHm_Chr5g0023401
rosa_laevigata	RLG00000022929 RLG00000032719
rosa_multiflora	Rmu_sc0000265.1_g000021 Rmu_sc0004629.1_g000005 Rmu_sc0006389.1_g000001
rosa_roxburghii	Rroxscaffold_1G00055650 Rroxscaffold_1G00055940
rosa_rugosa	Rorug03G0240900 Rorug05G0078900
rosa_samantha	Rh3AG289200 Rh3BG326000 Rh3CG323700 Rh3DG322000 Rh5AG165800 Rh5BG165000 Rh5CG179900 Rh5DG166500
rosa_wichuraiana	Rw0G013700 Rw3G025600 Rw5G014920 Rw5G015080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	211
Acc36I	ACCTGC	1 cut(s)	336
AccB1I	GGYRCC	1 cut(s)	16
AccB7I	CCANNNNNTGG	1 cut(s)	831
AccI	GTMKAC	1 cut(s)	156
AciI	CCGC	3 cut(s)	76, 502, 882
AclWI	GGATC	5 cut(s)	49, 377, 629, 741, 944
AcsI	RAATTY	4 cut(s)	167, 494, 569, 604
AcuI	CTGAAG	2 cut(s)	441, 722
AcyI	GRCGYC	1 cut(s)	17
AfaI	GTAC	3 cut(s)	441, 450, 816
AfiI	CCNNNNNNNGG	1 cut(s)	831
AflIII	ACRYGT	1 cut(s)	757
AgsI	TTSAA	3 cut(s)	90, 379, 609
AhlI	ACTAGT	1 cut(s)	827
AjnI	CCWGG	3 cut(s)	62, 244, 979
AluBI	AGCT	5 cut(s)	27, 59, 319, 467, 811
AluI	AGCT	5 cut(s)	27, 59, 319, 467, 811
Alw21I	GWGCWC	1 cut(s)	567
AlwI	GGATC	5 cut(s)	49, 377, 629, 741, 944
AlwNI	CAGNNNCTG	2 cut(s)	38, 407
Ama87I	CYCGRG	1 cut(s)	211
AoxI	GGCC	1 cut(s)	77
ApeKI	GCWGC	4 cut(s)	56, 261, 295, 689
ApoI	RAATTY	4 cut(s)	167, 494, 569, 604
Asp700I	GAANNNNTTC	1 cut(s)	851
AspLEI	GCGC	2 cut(s)	19, 38
AspS9I	GGNCC	3 cut(s)	69, 78, 664
AsuHPI	GGTGA	1 cut(s)	538
AvaI	CYCGRG	1 cut(s)	211
AvaII	GGWCC	2 cut(s)	69, 664
BaeGI	GKGCMC	1 cut(s)	990
BanI	GGYRCC	1 cut(s)	16
BanII	GRGCYC	1 cut(s)	462
BbsI	GAAGAC	1 cut(s)	429
Bbv12I	GWGCWC	1 cut(s)	567
BbvI	GCAGC	4 cut(s)	68, 273, 307, 676
BccI	CCATC	2 cut(s)	646, 898
BceAI	ACGGC	2 cut(s)	4, 30
BciT130I	CCWGG	3 cut(s)	64, 246, 981
BcuI	ACTAGT	1 cut(s)	827
BfaI	CTAG	1 cut(s)	828
BfoI	RGCGCY	2 cut(s)	20, 39
BfuAI	ACCTGC	1 cut(s)	336
BisI	GCNGC	5 cut(s)	57, 77, 262, 296, 690
BlpI	GCTNAGC	1 cut(s)	28
BlsI	GCNGC	5 cut(s)	58, 78, 263, 297, 691
Bme1390I	CCNGG	3 cut(s)	64, 246, 981
Bme18I	GGWCC	2 cut(s)	69, 664
BmeT110I	CYCGRG	1 cut(s)	211
BmgT120I	GGNCC	3 cut(s)	69, 78, 664
BmiI	GGNNCC	1 cut(s)	18
BmrFI	CCNGG	3 cut(s)	64, 246, 981
BpiI	GAAGAC	1 cut(s)	429
Bpu1102I	GCTNAGC	1 cut(s)	28
Bsa29I	ATCGAT	1 cut(s)	641
BsaHI	GRCGYC	1 cut(s)	17
BsaJI	CCNNGG	3 cut(s)	244, 856, 935
Bsc4I	CCNNNNNNNGG	1 cut(s)	831
Bse118I	RCCGGY	1 cut(s)	523
Bse3DI	GCAATG	3 cut(s)	518, 692, 861
BseBI	CCWGG	3 cut(s)	64, 246, 981
BseCI	ATCGAT	1 cut(s)	641
BseDI	CCNNGG	3 cut(s)	244, 856, 935
BseGI	GGATG	2 cut(s)	234, 684
BseLI	CCNNNNNNNGG	1 cut(s)	831
BseMI	GCAATG	3 cut(s)	518, 692, 861
BseMII	CTCAG	2 cut(s)	42, 113
BseSI	GKGCMC	1 cut(s)	990
BseXI	GCAGC	4 cut(s)	68, 273, 307, 676
BshFI	GGCC	1 cut(s)	79
BshNI	GGYRCC	1 cut(s)	16
BshVI	ATCGAT	1 cut(s)	641
BsiHKAI	GWGCWC	1 cut(s)	567
BsiHKCI	CYCGRG	1 cut(s)	211
BsiSI	CCGG	1 cut(s)	524
BslI	CCNNNNNNNGG	1 cut(s)	831
BsnI	GGCC	1 cut(s)	79
BsoBI	CYCGRG	1 cut(s)	211
Bsp1286I	GDGCHC	3 cut(s)	462, 567, 990
Bsp143I	GATC	5 cut(s)	41, 382, 634, 733, 949
Bsp1720I	GCTNAGC	1 cut(s)	28
BspACI	CCGC	3 cut(s)	76, 502, 882
BspANI	GGCC	1 cut(s)	79
BspCNI	CTCAG	2 cut(s)	41, 112
BspDI	ATCGAT	1 cut(s)	641
BspLI	GGNNCC	1 cut(s)	18
BspMI	ACCTGC	1 cut(s)	336
BspPI	GGATC	5 cut(s)	49, 377, 629, 741, 944
BspT107I	GGYRCC	1 cut(s)	16
BsrDI	GCAATG	3 cut(s)	518, 692, 861
BsrFI	RCCGGY	1 cut(s)	523
BssAI	RCCGGY	1 cut(s)	523
BssECI	CCNNGG	3 cut(s)	244, 856, 935
BssMI	GATC	5 cut(s)	41, 382, 634, 733, 949
BssNAI	GTATAC	1 cut(s)	157
BssNI	GRCGYC	1 cut(s)	17
BssT1I	CCWWGG	2 cut(s)	856, 935
Bst1107I	GTATAC	1 cut(s)	157
Bst2UI	CCWGG	3 cut(s)	64, 246, 981
Bst4CI	ACNGT	7 cut(s)	207, 277, 375, 403, 539, 791, 877
Bst6I	CTCTTC	1 cut(s)	545
BstACI	GRCGYC	1 cut(s)	17
BstC8I	GCNNGC	4 cut(s)	34, 118, 122, 515
BstDEI	CTNAG	2 cut(s)	28, 99
BstF5I	GGATG	2 cut(s)	234, 684
BstH2I	RGCGCY	2 cut(s)	20, 39
BstHHI	GCGC	2 cut(s)	19, 38
BstKTI	GATC	5 cut(s)	44, 385, 637, 736, 952
BstMBI	GATC	5 cut(s)	41, 382, 634, 733, 949
BstMWI	GCNNNNNNNGC	6 cut(s)	33, 44, 53, 292, 510, 888
BstNI	CCWGG	3 cut(s)	64, 246, 981
BstNSI	RCATGY	3 cut(s)	120, 261, 761
BstSCI	CCNGG	3 cut(s)	62, 244, 979
BstSLI	GKGCMC	1 cut(s)	990
BstV1I	GCAGC	4 cut(s)	68, 273, 307, 676
BstV2I	GAAGAC	1 cut(s)	429
BstX2I	RGATCY	4 cut(s)	41, 382, 733, 949
BstYI	RGATCY	4 cut(s)	41, 382, 733, 949
BstZ17I	GTATAC	1 cut(s)	157
Bsu15I	ATCGAT	1 cut(s)	641
BsuRI	GGCC	1 cut(s)	79
BsuTUI	ATCGAT	1 cut(s)	641
BtgZI	GCGATG	2 cut(s)	326, 917
BtsCI	GGATG	2 cut(s)	234, 684
BtsIMutI	CAGTG	3 cut(s)	203, 408, 873
BveI	ACCTGC	1 cut(s)	336
Cac8I	GCNNGC	4 cut(s)	34, 118, 122, 515
CaiI	CAGNNNCTG	2 cut(s)	38, 407
CfoI	GCGC	2 cut(s)	19, 38
Cfr10I	RCCGGY	1 cut(s)	523
Cfr13I	GGNCC	3 cut(s)	69, 78, 664
ClaI	ATCGAT	1 cut(s)	641
Csp6I	GTAC	3 cut(s)	440, 449, 815
CviAII	CATG	7 cut(s)	117, 258, 289, 453, 546, 758, 966
CviQI	GTAC	3 cut(s)	440, 449, 815
DdeI	CTNAG	2 cut(s)	28, 99
DinI	GGCGCC	1 cut(s)	18
DpnI	GATC	5 cut(s)	43, 384, 636, 735, 951
DpnII	GATC	5 cut(s)	41, 382, 634, 733, 949
Eam1104I	CTCTTC	1 cut(s)	545
EarI	CTCTTC	1 cut(s)	545
Eco130I	CCWWGG	2 cut(s)	856, 935
Eco24I	GRGCYC	1 cut(s)	462
Eco47I	GGWCC	2 cut(s)	69, 664
Eco57I	CTGAAG	2 cut(s)	441, 722
Eco88I	CYCGRG	1 cut(s)	211
EcoO109I	RGGNCCY	1 cut(s)	664
EcoRI	GAATTC	1 cut(s)	604
EcoRII	CCWGG	3 cut(s)	62, 244, 979
EcoT14I	CCWWGG	2 cut(s)	856, 935
EcoT38I	GRGCYC	1 cut(s)	462
EgeI	GGCGCC	1 cut(s)	18
EheI	GGCGCC	1 cut(s)	18
ErhI	CCWWGG	2 cut(s)	856, 935
FaeI	CATG	7 cut(s)	120, 261, 292, 456, 549, 761, 969
FatI	CATG	7 cut(s)	116, 257, 288, 452, 545, 757, 965
FauI	CCCGC	2 cut(s)	509, 875
FblI	GTMKAC	1 cut(s)	156
Fnu4HI	GCNGC	5 cut(s)	57, 77, 262, 296, 690
FokI	GGATG	2 cut(s)	221, 691
FriOI	GRGCYC	1 cut(s)	462
Fsp4HI	GCNGC	5 cut(s)	57, 77, 262, 296, 690
FspBI	CTAG	1 cut(s)	828
GlaI	GCGC	2 cut(s)	18, 37
GluI	GCNGC	5 cut(s)	57, 77, 262, 296, 690
HaeII	RGCGCY	2 cut(s)	20, 39
HaeIII	GGCC	1 cut(s)	79
HapII	CCGG	1 cut(s)	524
HhaI	GCGC	2 cut(s)	19, 38
Hin1I	GRCGYC	1 cut(s)	17
Hin1II	CATG	7 cut(s)	120, 261, 292, 456, 549, 761, 969
Hin6I	GCGC	2 cut(s)	17, 36
HinP1I	GCGC	2 cut(s)	17, 36
HinfI	GANTC	4 cut(s)	50, 337, 628, 643
HpaII	CCGG	1 cut(s)	524
HphI	GGTGA	1 cut(s)	538
Hpy166II	GTNNAC	3 cut(s)	157, 440, 529
Hpy188I	TCNGA	3 cut(s)	273, 336, 603
Hpy188III	TCNNGA	3 cut(s)	90, 632, 706
Hpy8I	GTNNAC	3 cut(s)	157, 440, 529
HpyAV	CCTTC	1 cut(s)	963
HpyCH4III	ACNGT	7 cut(s)	207, 277, 375, 403, 539, 791, 877
HpyCH4V	TGCA	5 cut(s)	120, 198, 261, 395, 692
HpyF10VI	GCNNNNNNNGC	6 cut(s)	33, 44, 53, 292, 510, 888
HpyF3I	CTNAG	2 cut(s)	28, 99
Hsp92I	GRCGYC	1 cut(s)	17
Hsp92II	CATG	7 cut(s)	120, 261, 292, 456, 549, 761, 969
HspAI	GCGC	2 cut(s)	17, 36
KasI	GGCGCC	1 cut(s)	16
Kzo9I	GATC	5 cut(s)	41, 382, 634, 733, 949
LmnI	GCTCC	1 cut(s)	562
Lsp1109I	GCAGC	4 cut(s)	68, 273, 307, 676
MaeI	CTAG	1 cut(s)	828
MaeIII	GTNAC	3 cut(s)	403, 554, 760
MalI	GATC	5 cut(s)	43, 384, 636, 735, 951
MboI	GATC	5 cut(s)	41, 382, 634, 733, 949
MboII	GAAGA	4 cut(s)	434, 562, 728, 733
MfeI	CAATTG	1 cut(s)	915
MflI	RGATCY	4 cut(s)	41, 382, 733, 949
MhlI	GDGCHC	3 cut(s)	462, 567, 990
MluCI	AATT	9 cut(s)	126, 167, 325, 494, 569, 604, 710, 775, 915
Mly113I	GGCGCC	1 cut(s)	17
MlyI	GAGTC	1 cut(s)	622
MmeI	TCCRAC	1 cut(s)	196
MnlI	CCTC	8 cut(s)	60, 207, 220, 574, 655, 677, 721, 977
MroXI	GAANNNNTTC	1 cut(s)	851
MseI	TTAA	6 cut(s)	164, 177, 354, 480, 615, 930
MslI	CAYNNNNRTG	1 cut(s)	758
MspI	CCGG	1 cut(s)	524
MspR9I	CCNGG	3 cut(s)	64, 246, 981
MunI	CAATTG	1 cut(s)	915
MvaI	CCWGG	3 cut(s)	64, 246, 981
MwoI	GCNNNNNNNGC	6 cut(s)	33, 44, 53, 292, 510, 888
NarI	GGCGCC	1 cut(s)	17
NdeII	GATC	5 cut(s)	41, 382, 634, 733, 949
NlaIII	CATG	7 cut(s)	120, 261, 292, 456, 549, 761, 969
NlaIV	GGNNCC	1 cut(s)	18
NmuCI	GTSAC	3 cut(s)	403, 554, 760
NspI	RCATGY	3 cut(s)	120, 261, 761
PaeI	GCATGC	1 cut(s)	120
PaeR7I	CTCGAG	1 cut(s)	211
PciI	ACATGT	1 cut(s)	757
PdmI	GAANNNNTTC	1 cut(s)	851
PfeI	GAWTC	3 cut(s)	50, 337, 643
PflMI	CCANNNNNTGG	1 cut(s)	831
PfoI	TCCNGGA	1 cut(s)	979
PkrI	GCNGC	5 cut(s)	58, 78, 263, 297, 691
PleI	GAGTC	1 cut(s)	622
PluTI	GGCGCC	1 cut(s)	20
PpsI	GAGTC	1 cut(s)	622
PpuMI	RGGWCCY	1 cut(s)	664
PscI	ACATGT	1 cut(s)	757
Psp5II	RGGWCCY	1 cut(s)	664
Psp6I	CCWGG	3 cut(s)	62, 244, 979
PspGI	CCWGG	3 cut(s)	62, 244, 979
PspN4I	GGNNCC	1 cut(s)	18
PspPI	GGNCC	3 cut(s)	69, 78, 664
PspPPI	RGGWCCY	1 cut(s)	664
PspXI	VCTCGAGB	1 cut(s)	211
PstNI	CAGNNNCTG	2 cut(s)	38, 407
PsuI	RGATCY	4 cut(s)	41, 382, 733, 949
RsaI	GTAC	3 cut(s)	441, 450, 816
RsaNI	GTAC	3 cut(s)	440, 449, 815
RseI	CAYNNNNRTG	1 cut(s)	758
SaqAI	TTAA	6 cut(s)	164, 177, 354, 480, 615, 930
SatI	GCNGC	5 cut(s)	57, 77, 262, 296, 690
Sau3AI	GATC	5 cut(s)	41, 382, 634, 733, 949
Sau96I	GGNCC	3 cut(s)	69, 78, 664
SchI	GAGTC	1 cut(s)	622
ScrFI	CCNGG	3 cut(s)	64, 246, 981
SduI	GDGCHC	3 cut(s)	462, 567, 990
SfoI	GGCGCC	1 cut(s)	18
Sfr274I	CTCGAG	1 cut(s)	211
SinI	GGWCC	2 cut(s)	69, 664
SlaI	CTCGAG	1 cut(s)	211
SmiMI	CAYNNNNRTG	1 cut(s)	758
SmlI	CTYRAG	1 cut(s)	211
SmoI	CTYRAG	1 cut(s)	211
SpeI	ACTAGT	1 cut(s)	827
SphI	GCATGC	1 cut(s)	120
Sse9I	AATT	9 cut(s)	126, 167, 325, 494, 569, 604, 710, 775, 915
SsiI	CCGC	3 cut(s)	76, 502, 882
SspDI	GGCGCC	1 cut(s)	16
SspI	AATATT	1 cut(s)	86
SspMI	CTAG	1 cut(s)	828
StyD4I	CCNGG	3 cut(s)	62, 244, 979
StyI	CCWWGG	2 cut(s)	856, 935
TaaI	ACNGT	7 cut(s)	207, 277, 375, 403, 539, 791, 877
TaqI	TCGA	2 cut(s)	212, 641
TasI	AATT	9 cut(s)	126, 167, 325, 494, 569, 604, 710, 775, 915
TauI	GCSGC	1 cut(s)	79
TfiI	GAWTC	3 cut(s)	50, 337, 643
Tru1I	TTAA	6 cut(s)	164, 177, 354, 480, 615, 930
Tru9I	TTAA	6 cut(s)	164, 177, 354, 480, 615, 930
TscAI	CASTG	3 cut(s)	210, 408, 880
TseFI	GTSAC	3 cut(s)	403, 554, 760
TseI	GCWGC	4 cut(s)	56, 261, 295, 689
Tsp45I	GTSAC	3 cut(s)	403, 554, 760
TspDTI	ATGAA	3 cut(s)	305, 534, 945
TspRI	CASTG	3 cut(s)	210, 408, 880
Van91I	CCANNNNNTGG	1 cut(s)	831
VpaK11BI	GGWCC	2 cut(s)	69, 664
XapI	RAATTY	4 cut(s)	167, 494, 569, 604
XceI	RCATGY	3 cut(s)	120, 261, 761
XhoI	CTCGAG	1 cut(s)	211
XmiI	GTMKAC	1 cut(s)	156
XmnI	GAANNNNTTC	1 cut(s)	851
XspI	CTAG	1 cut(s)	828

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.