Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0001483

Physical Location & Seq

Genomic Coordinates Reverse (-)

25271396 .. 25274677

Gene Structure 3282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g27020.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGAAGCAAAAGATGGAGCCTCAAATCCAACCTCCTCTACCAAAAAGAAATCCAGAAAACCCAAATATTCCAAGTTCACACAGCAAGAGCTTCCAGCTTGCAAACCAATTTTAACACCAGCGTCGGTCATTTTAATATTTGTCGCCATCGGCATTGTCTTTATACCAATTGGACTTGCTTCCTTATTTGCATCAGAGCGTGTGGTGGAAATCGTCCACCACTATGACAAAGATTGCATTCCTCTTAAATATGCAGATAATATGCTTGCATACATTCAGAGTAGTAAAACTAACAAGACATGCGTTAGGAAACTCACTATACCGAAACAAATGAAATCTCCTGTTTACATTTACTACCAGCTTGATCACTTCTATCAGAATCATCGCCGGTATGTTAAAAGTAGAAGCGACAAACAATTGCGGAGCAAGTCCTATGAAAATAAAACAGATGACTGTGCTCCTGAACGCTATACAGCAAAGGGTGTAATTGTTCCGTGTGGTCTCGTTGCATGGAGTTTGTTTAACGACACATACAAGTTTTCAGTGAATAACAAACAACTAGGAGTCAGCAAAAAGGACATCACATGGAAAAGTGACCAAAAGAACAAATTTGGCTCAGACGTCTATCCTAAGAATTTTCAGAGCGGGGGTTTGATTGGAGGAGCAAAACTGAATTCTAGCATACCTCTGAGTGAACAAGAAGATCTTATGGTTTGGATGCGAACTGCAGCATTGCCAACTTTCAGAAAACTGTACGGGAGAATAGAAGTGGACCTTGAAGCCGATGCTGTAATAACTGTGACAATAGAGAATAATTATAACACTTACAGCTTCCGTGGCAATAAGAAGTTGGTACTTTCAACCGCAAGCTGGATTGGCGGAAAGAATTATCTACTAGGTGTGGCATACCTTACTGTTGGTGGGCTGTGTTTGTTCTTGGCTCTAGCCTTCCTACTTCTCTATCTGATCAAGCCAAGGCCTCTTGGGGATATATCGTACTTGTCTTGGAACAGGAGTGCATCAGGAGGACACATATACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDC50

Protein Analysis

347

Amino Acids

38.98

Weight (kDa)

9.58

Isoelectric Point (pI)

39.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001483)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16360 AT1G16360 AT1G16360 AT1G16360 AT1G16360 AT1G54320 AT1G79450 AT1G79450 AT3G12740
fragaria_vesca	FvH4_1g27280 FvH4_1g27280 FvH4_1g27280 FvH4_1g27280 FvH4_1g27280 FvH4_1g27280 FvH4_3g14090
malus_domestica	MD05G1238200.v1.1 MD09G1280100.v1.1 MD10G1216500.v1.1 MD17G1286800.v1.1
prunus_persica	Prupe.3G014200_v2.0.a1 Prupe.3G014200_v2.0.a1 Prupe.3G014200_v2.0.a1 Prupe.4G128200_v2.0.a1 Prupe.4G128200_v2.0.a1
pyrus_communis	pycom05g21420 pycom09g18820 pycom17g27020
rosa_chinensis	RchiOBHm_Chr3g0488711 RchiOBHm_Chr5g0023401
rosa_laevigata	RLG00000022929 RLG00000032719
rosa_multiflora	Rmu_sc0000265.1_g000021 Rmu_sc0004629.1_g000005 Rmu_sc0006389.1_g000001
rosa_roxburghii	Rroxscaffold_1G00055650 Rroxscaffold_1G00055940
rosa_rugosa	Rorug03G0240900 Rorug05G0078900
rosa_samantha	Rh3AG289200 Rh3BG326000 Rh3CG323700 Rh3DG322000 Rh5AG165800 Rh5BG165000 Rh5CG179900 Rh5DG166500
rosa_wichuraiana	Rw0G013700 Rw3G025600 Rw5G014920 Rw5G015080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	819
AatII	GACGTC	1 cut(s)	624
AccBSI	CCGCTC	1 cut(s)	645
AciI	CCGC	4 cut(s)	421, 645, 864, 879
AcsI	RAATTY	3 cut(s)	608, 634, 673
AcyI	GRCGYC	1 cut(s)	621
AfaI	GTAC	3 cut(s)	755, 855, 998
AfiI	CCNNNNNNNGG	1 cut(s)	870
AgsI	TTSAA	2 cut(s)	779, 861
AluBI	AGCT	5 cut(s)	91, 98, 361, 831, 870
AluI	AGCT	5 cut(s)	91, 98, 361, 831, 870
Alw21I	GWGCWC	1 cut(s)	460
Alw26I	GTCTC	1 cut(s)	506
AoxI	GGCC	1 cut(s)	977
ApeKI	GCWGC	1 cut(s)	728
ApoI	RAATTY	3 cut(s)	608, 634, 673
AspS9I	GGNCC	1 cut(s)	772
AvaII	GGWCC	1 cut(s)	772
Bbv12I	GWGCWC	1 cut(s)	460
BbvI	GCAGC	1 cut(s)	740
BccI	CCATC	2 cut(s)	8, 155
BclI	TGATCA	2 cut(s)	364, 966
BcoDI	GTCTC	1 cut(s)	506
BfaI	CTAG	5 cut(s)	560, 678, 896, 944, 1039
BfmI	CTRYAG	1 cut(s)	726
BglII	AGATCT	1 cut(s)	703
BisI	GCNGC	1 cut(s)	729
BlsI	GCNGC	1 cut(s)	730
Bme18I	GGWCC	1 cut(s)	772
BmgT120I	GGNCC	1 cut(s)	772
BmiI	GGNNCC	1 cut(s)	19
BmsI	GCATC	4 cut(s)	200, 708, 775, 1028
BsaHI	GRCGYC	1 cut(s)	621
BsaI	GGTCTC	1 cut(s)	506
BsaJI	CCNNGG	2 cut(s)	835, 974
Bsc4I	CCNNNNNNNGG	1 cut(s)	870
Bse118I	RCCGGY	1 cut(s)	387
Bse3DI	GCAATG	1 cut(s)	731
BseDI	CCNNGG	2 cut(s)	835, 974
BseGI	GGATG	1 cut(s)	723
BseLI	CCNNNNNNNGG	1 cut(s)	870
BseMI	GCAATG	1 cut(s)	731
BseMII	CTCAG	2 cut(s)	630, 680
BseRI	GAGGAG	2 cut(s)	25, 675
BseXI	GCAGC	1 cut(s)	740
BshFI	GGCC	1 cut(s)	979
BsiHKAI	GWGCWC	1 cut(s)	460
BsiSI	CCGG	1 cut(s)	388
BslI	CCNNNNNNNGG	1 cut(s)	870
BsmAI	GTCTC	1 cut(s)	506
BsmI	GAATGC	1 cut(s)	237
BsnI	GGCC	1 cut(s)	979
Bso31I	GGTCTC	1 cut(s)	506
Bsp1286I	GDGCHC	1 cut(s)	460
Bsp143I	GATC	3 cut(s)	364, 703, 966
BspACI	CCGC	4 cut(s)	421, 645, 864, 879
BspANI	GGCC	1 cut(s)	979
BspCNI	CTCAG	2 cut(s)	629, 681
BspLI	GGNNCC	1 cut(s)	19
BspMAI	CTGCAG	1 cut(s)	730
BspTNI	GGTCTC	1 cut(s)	506
BsrBI	CCGCTC	1 cut(s)	645
BsrDI	GCAATG	1 cut(s)	731
BsrFI	RCCGGY	1 cut(s)	387
BssAI	RCCGGY	1 cut(s)	387
BssECI	CCNNGG	2 cut(s)	835, 974
BssMI	GATC	3 cut(s)	364, 703, 966
BssNI	GRCGYC	1 cut(s)	621
BssT1I	CCWWGG	1 cut(s)	974
Bst4CI	ACNGT	4 cut(s)	455, 753, 799, 916
BstACI	GRCGYC	1 cut(s)	621
BstC8I	GCNNGC	3 cut(s)	100, 267, 868
BstDEI	CTNAG	3 cut(s)	616, 630, 689
BstDSI	CCRYGG	1 cut(s)	835
BstF5I	GGATG	1 cut(s)	723
BstKTI	GATC	3 cut(s)	367, 706, 969
BstMAI	GTCTC	1 cut(s)	506
BstMBI	GATC	3 cut(s)	364, 703, 966
BstMWI	GCNNNNNNNGC	2 cut(s)	837, 876
BstNSI	RCATGY	1 cut(s)	303
BstSFI	CTRYAG	1 cut(s)	726
BstV1I	GCAGC	1 cut(s)	740
BstX2I	RGATCY	1 cut(s)	703
BstYI	RGATCY	1 cut(s)	703
BsuRI	GGCC	1 cut(s)	979
BtgI	CCRYGG	1 cut(s)	835
BtgZI	GCGATG	1 cut(s)	368
BtsCI	GGATG	1 cut(s)	723
BtsIMutI	CAGTG	1 cut(s)	549
Cac8I	GCNNGC	3 cut(s)	100, 267, 868
Cfr10I	RCCGGY	1 cut(s)	387
Cfr13I	GGNCC	1 cut(s)	772
CseI	GACGC	1 cut(s)	111
Csp6I	GTAC	3 cut(s)	754, 854, 997
CviAII	CATG	3 cut(s)	300, 510, 585
CviQI	GTAC	3 cut(s)	754, 854, 997
DdeI	CTNAG	3 cut(s)	616, 630, 689
DpnI	GATC	3 cut(s)	366, 705, 968
DpnII	GATC	3 cut(s)	364, 703, 966
EciI	GGCGGA	1 cut(s)	894
Eco130I	CCWWGG	1 cut(s)	974
Eco147I	AGGCCT	1 cut(s)	979
Eco31I	GGTCTC	1 cut(s)	506
Eco47I	GGWCC	1 cut(s)	772
EcoRI	GAATTC	1 cut(s)	673
EcoT14I	CCWWGG	1 cut(s)	974
ErhI	CCWWGG	1 cut(s)	974
FaeI	CATG	3 cut(s)	303, 513, 588
FalI	AAGNNNNNCTT	4 cut(s)	690, 722, 759, 791
FatI	CATG	3 cut(s)	299, 509, 584
FauI	CCCGC	1 cut(s)	638
FbaI	TGATCA	2 cut(s)	364, 966
Fnu4HI	GCNGC	1 cut(s)	729
FokI	GGATG	1 cut(s)	730
Fsp4HI	GCNGC	1 cut(s)	729
FspBI	CTAG	5 cut(s)	560, 678, 896, 944, 1039
GluI	GCNGC	1 cut(s)	729
HaeIII	GGCC	1 cut(s)	979
HapII	CCGG	1 cut(s)	388
HgaI	GACGC	1 cut(s)	111
Hin1I	GRCGYC	1 cut(s)	621
Hin1II	CATG	3 cut(s)	303, 513, 588
HinfI	GANTC	2 cut(s)	379, 564
HpaII	CCGG	1 cut(s)	388
Hpy166II	GTNNAC	5 cut(s)	78, 217, 346, 695, 772
Hpy188I	TCNGA	8 cut(s)	196, 279, 378, 619, 642, 690, 746, 966
Hpy188III	TCNNGA	3 cut(s)	54, 461, 1023
Hpy8I	GTNNAC	5 cut(s)	78, 217, 346, 695, 772
Hpy99I	CGWCG	1 cut(s)	127
HpyAV	CCTTC	1 cut(s)	958
HpyCH4III	ACNGT	4 cut(s)	455, 753, 799, 916
HpyCH4IV	ACGT	1 cut(s)	621
HpyCH4V	TGCA	8 cut(s)	102, 191, 237, 254, 269, 509, 728, 1019
HpyF10VI	GCNNNNNNNGC	2 cut(s)	837, 876
HpyF3I	CTNAG	3 cut(s)	616, 630, 689
HpySE526I	ACGT	1 cut(s)	621
Hsp92I	GRCGYC	1 cut(s)	621
Hsp92II	CATG	3 cut(s)	303, 513, 588
Ksp22I	TGATCA	2 cut(s)	364, 966
Kzo9I	GATC	3 cut(s)	364, 703, 966
LmnI	GCTCC	4 cut(s)	17, 423, 463, 662
Lsp1109I	GCAGC	1 cut(s)	740
LweI	GCATC	4 cut(s)	200, 708, 775, 1028
MaeI	CTAG	5 cut(s)	560, 678, 896, 944, 1039
MaeII	ACGT	1 cut(s)	621
MaeIII	GTNAC	2 cut(s)	593, 799
MalI	GATC	3 cut(s)	366, 705, 968
MbiI	CCGCTC	1 cut(s)	645
MboI	GATC	3 cut(s)	364, 703, 966
MboII	GAAGA	1 cut(s)	713
MfeI	CAATTG	2 cut(s)	168, 416
MflI	RGATCY	1 cut(s)	703
MhlI	GDGCHC	1 cut(s)	460
MluCI	AATT	9 cut(s)	108, 168, 416, 486, 608, 634, 673, 814, 886
MlyI	GAGTC	1 cut(s)	573
MmeI	TCCRAC	1 cut(s)	53
MnlI	CCTC	8 cut(s)	31, 43, 46, 252, 653, 696, 990, 1019
MseI	TTAA	5 cut(s)	113, 134, 246, 396, 522
MslI	CAYNNNNRTG	1 cut(s)	222
MspI	CCGG	1 cut(s)	388
MunI	CAATTG	2 cut(s)	168, 416
Mva1269I	GAATGC	1 cut(s)	237
MwoI	GCNNNNNNNGC	2 cut(s)	837, 876
NdeII	GATC	3 cut(s)	364, 703, 966
NlaIII	CATG	3 cut(s)	303, 513, 588
NlaIV	GGNNCC	1 cut(s)	19
NmuCI	GTSAC	2 cut(s)	593, 799
NspI	RCATGY	1 cut(s)	303
PceI	AGGCCT	1 cut(s)	979
PctI	GAATGC	1 cut(s)	237
PfeI	GAWTC	1 cut(s)	379
PkrI	GCNGC	1 cut(s)	730
PleI	GAGTC	1 cut(s)	572
PpsI	GAGTC	1 cut(s)	572
PsiI	TTATAA	1 cut(s)	819
PspN4I	GGNNCC	1 cut(s)	19
PspPI	GGNCC	1 cut(s)	772
PstI	CTGCAG	1 cut(s)	730
PsuI	RGATCY	1 cut(s)	703
RsaI	GTAC	3 cut(s)	755, 855, 998
RsaNI	GTAC	3 cut(s)	754, 854, 997
RseI	CAYNNNNRTG	1 cut(s)	222
SaqAI	TTAA	5 cut(s)	113, 134, 246, 396, 522
SatI	GCNGC	1 cut(s)	729
Sau3AI	GATC	3 cut(s)	364, 703, 966
Sau96I	GGNCC	1 cut(s)	772
SchI	GAGTC	1 cut(s)	573
SduI	GDGCHC	1 cut(s)	460
SfaNI	GCATC	4 cut(s)	200, 708, 775, 1028
SfcI	CTRYAG	1 cut(s)	726
SinI	GGWCC	1 cut(s)	772
SmiMI	CAYNNNNRTG	1 cut(s)	222
Sse9I	AATT	9 cut(s)	108, 168, 416, 486, 608, 634, 673, 814, 886
SseBI	AGGCCT	1 cut(s)	979
SsiI	CCGC	4 cut(s)	421, 645, 864, 879
SspI	AATATT	2 cut(s)	68, 138
SspMI	CTAG	5 cut(s)	560, 678, 896, 944, 1039
StuI	AGGCCT	1 cut(s)	979
StyI	CCWWGG	1 cut(s)	974
TaaI	ACNGT	4 cut(s)	455, 753, 799, 916
TaiI	ACGT	1 cut(s)	624
TaqII	GACCGA	1 cut(s)	115
TasI	AATT	9 cut(s)	108, 168, 416, 486, 608, 634, 673, 814, 886
TfiI	GAWTC	1 cut(s)	379
Tru1I	TTAA	5 cut(s)	113, 134, 246, 396, 522
Tru9I	TTAA	5 cut(s)	113, 134, 246, 396, 522
TscAI	CASTG	1 cut(s)	549
TseFI	GTSAC	2 cut(s)	593, 799
TseI	GCWGC	1 cut(s)	728
Tsp45I	GTSAC	2 cut(s)	593, 799
TspDTI	ATGAA	2 cut(s)	347, 450
TspGWI	ACGGA	2 cut(s)	483, 824
TspRI	CASTG	1 cut(s)	549
VpaK11BI	GGWCC	1 cut(s)	772
XapI	RAATTY	3 cut(s)	608, 634, 673
XceI	RCATGY	1 cut(s)	303
XspI	CTAG	5 cut(s)	560, 678, 896, 944, 1039
ZraI	GACGTC	1 cut(s)	622

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.