Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001483

Physical Location & Seq

Genomic Coordinates Forward (+)

4049309 .. 4051775

Gene Structure 2467 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G12740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGTCTTCTTCTAACACGCCATCTTCTAGCGCCGCCGCTGCCGGATCGATAGATTCTTCCGCCGCCCGGAGAAATTCCAAGAGACCCAAGTATTCGAAATTTACTCAGCAGGAGCTTCCTGCTTGCAAACCAATTCTTACGCCTGGTTGGGTGATTTCAACGTTTTTGATCATTAGTGTTATCTTCATTCCCCTTGGTGTTATTTCTCTCTTTGCTTCTCAGGATGTTGTTGAGATCGTTGATCGGTATGATAGTGCATGCATACCTCTATCTGATAGGGCTAACAAGGTTGCATACATTCAAGGAACTGGAAATAAATCTTGTACCCGGACGCTAATTGTGCCTAAGCGTATGAAGCAGCCTATCTACGTATATTACCAGCTTGAGAACTTCTACCAGAATCACCGCAGGTATGTGAAAAGCCGAAGTGATTCGCAATTGAGAAGTGTGAAAGATGAGAATCAAATAGACGCATGCAAGCCTGAGGATGATTTTGGTGGGCAGCCAATTGTGCCATGTGGTCTAATTGCTTGGAGTCTCTTTAATGACACATACGTTCTATCAAGAAATAACCAGGGTTTAACGGTAAACAAGAAAGGAATTGCATGGAAGAGCGACAAGGAACACAAGTTTGGGAAAAATGTGTTTCCCAAGAACTTTCAGAAGGGCAATCTCACTGGTGGTGCCAGTCTAGATCCAAATAAACCATTGAGTGATCAAGAGGATCTGATCGTGTGGATGAGGACTGCTGCGTTGCCAACATTTAGAAAATTATACGGGAAGATAGAGAGTGACTTGGAGAAGGGTGAGAACATACAAGTGACTCTGCAGAACAACTACAACACATACAGTTTCAGTGGGAAGAAGAAGCTTGTTCTGTCAACAACAAGTTGGCTTGGTGGAAAGAACGACTTCCTCGGCATTGCTTACCTCACCGTTGGGGGAATCTGTTTCGTCTTGGCACTTGCATTTACCGTCATGTATCTTGTGAAACCCAGGCGACTCGGTGATCCTACCTACTTGTCGTGGAACAGAATTCCTGGAGGTCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0005789 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0008150 GO:0010008 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0031090 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0033036 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0071702 GO:0071944 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDC50

Protein Analysis

350

Amino Acids

39.07

Weight (kDa)

9.6

Isoelectric Point (pI)

45.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDC50	PF03381	70 - 334	1.9e-92	LEM3 (ligand-effect modulator 3) family / CDC50 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001483)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16360 AT1G16360 AT1G16360 AT1G16360 AT1G16360 AT1G54320 AT1G79450 AT1G79450 AT3G12740
fragaria_vesca	FvH4_1g27280 FvH4_1g27280 FvH4_1g27280 FvH4_1g27280 FvH4_1g27280 FvH4_1g27280 FvH4_3g14090
malus_domestica	MD05G1238200.v1.1 MD09G1280100.v1.1 MD10G1216500.v1.1 MD17G1286800.v1.1
prunus_persica	Prupe.3G014200_v2.0.a1 Prupe.3G014200_v2.0.a1 Prupe.3G014200_v2.0.a1 Prupe.4G128200_v2.0.a1 Prupe.4G128200_v2.0.a1
pyrus_communis	pycom05g21420 pycom09g18820 pycom17g27020
rosa_chinensis	RchiOBHm_Chr3g0488711 RchiOBHm_Chr5g0023401
rosa_laevigata	RLG00000022929 RLG00000032719
rosa_multiflora	Rmu_sc0000265.1_g000021 Rmu_sc0004629.1_g000005 Rmu_sc0006389.1_g000001
rosa_roxburghii	Rroxscaffold_1G00055650 Rroxscaffold_1G00055940
rosa_rugosa	Rorug03G0240900 Rorug05G0078900
rosa_samantha	Rh3AG289200 Rh3BG326000 Rh3CG323700 Rh3DG322000 Rh5AG165800 Rh5BG165000 Rh5CG179900 Rh5DG166500
rosa_wichuraiana	Rw0G013700 Rw3G025600 Rw5G014920 Rw5G015080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	399
AccB1I	GGYRCC	1 cut(s)	683
AciI	CCGC	5 cut(s)	33, 36, 60, 63, 406
AclI	AACGTT	1 cut(s)	161
AclWI	GGATC	4 cut(s)	52, 689, 732, 1004
AcsI	RAATTY	3 cut(s)	73, 98, 1035
AfaI	GTAC	1 cut(s)	325
AfiI	CCNNNNNNNGG	1 cut(s)	66
AgsI	TTSAA	2 cut(s)	159, 302
AjnI	CCWGG	4 cut(s)	142, 573, 995, 1039
AjuI	GAANNNNNNNTTGG	2 cut(s)	615, 647
AluBI	AGCT	3 cut(s)	115, 382, 871
AluI	AGCT	3 cut(s)	115, 382, 871
Alw26I	GTCTC	2 cut(s)	76, 542
AlwI	GGATC	4 cut(s)	52, 689, 732, 1004
ApeKI	GCWGC	4 cut(s)	38, 358, 502, 749
ApoI	RAATTY	3 cut(s)	73, 98, 1035
Asp700I	GAANNNNTTC	2 cut(s)	430, 911
AspLEI	GCGC	1 cut(s)	32
AsuC2I	CCSGG	2 cut(s)	67, 328
AsuHPI	GGTGA	5 cut(s)	163, 395, 818, 925, 1019
AsuII	TTCGAA	1 cut(s)	95
AxyI	CCTNAGG	1 cut(s)	483
BanI	GGYRCC	1 cut(s)	683
BbvI	GCAGC	4 cut(s)	25, 370, 514, 736
BccI	CCATC	1 cut(s)	28
BciT130I	CCWGG	4 cut(s)	144, 575, 997, 1041
BclI	TGATCA	2 cut(s)	168, 715
BcnI	CCSGG	2 cut(s)	67, 328
BcoDI	GTCTC	2 cut(s)	76, 542
BfaI	CTAG	2 cut(s)	27, 692
BfmI	CTRYAG	1 cut(s)	827
BfoI	RGCGCY	1 cut(s)	33
BfuAI	ACCTGC	1 cut(s)	399
BisI	GCNGC	7 cut(s)	33, 36, 39, 63, 359, 503, 750
BlsI	GCNGC	7 cut(s)	34, 37, 40, 64, 360, 504, 751
Bme1390I	CCNGG	6 cut(s)	67, 144, 328, 575, 997, 1041
BmiI	GGNNCC	1 cut(s)	685
BmrFI	CCNGG	6 cut(s)	67, 144, 328, 575, 997, 1041
Bpu10I	CCTNAGC	1 cut(s)	345
Bpu14I	TTCGAA	1 cut(s)	95
BpuEI	CTTGAG	1 cut(s)	404
BpuMI	CCSGG	2 cut(s)	67, 328
Bsa29I	ATCGAT	1 cut(s)	47
BsaAI	YACGTR	1 cut(s)	370
BsaBI	GATNNNNATC	1 cut(s)	459
BsaI	GGTCTC	1 cut(s)	76
BsaJI	CCNNGG	4 cut(s)	193, 574, 916, 995
Bsc4I	CCNNNNNNNGG	1 cut(s)	66
Bse1I	ACTGG	3 cut(s)	313, 682, 687
Bse21I	CCTNAGG	1 cut(s)	483
Bse3DI	GCAATG	1 cut(s)	921
Bse8I	GATNNNNATC	1 cut(s)	459
BseBI	CCWGG	4 cut(s)	144, 575, 997, 1041
BseCI	ATCGAT	1 cut(s)	47
BseDI	CCNNGG	4 cut(s)	193, 574, 916, 995
BseGI	GGATG	3 cut(s)	229, 493, 744
BseJI	GATNNNNATC	1 cut(s)	459
BseLI	CCNNNNNNNGG	1 cut(s)	66
BseMI	GCAATG	1 cut(s)	921
BseMII	CTCAG	3 cut(s)	119, 233, 474
BseNI	ACTGG	3 cut(s)	313, 682, 687
BseXI	GCAGC	4 cut(s)	25, 370, 514, 736
BshNI	GGYRCC	1 cut(s)	683
BshVI	ATCGAT	1 cut(s)	47
BsiSI	CCGG	3 cut(s)	42, 67, 328
BslI	CCNNNNNNNGG	1 cut(s)	66
BsmAI	GTCTC	2 cut(s)	76, 542
Bso31I	GGTCTC	1 cut(s)	76
Bsp119I	TTCGAA	1 cut(s)	95
Bsp143I	GATC	9 cut(s)	44, 168, 234, 241, 694, 715, 724, 729, 1009
BspACI	CCGC	5 cut(s)	33, 36, 60, 63, 406
BspCNI	CTCAG	3 cut(s)	118, 232, 475
BspDI	ATCGAT	1 cut(s)	47
BspLI	GGNNCC	1 cut(s)	685
BspMAI	CTGCAG	1 cut(s)	831
BspMI	ACCTGC	1 cut(s)	399
BspPI	GGATC	4 cut(s)	52, 689, 732, 1004
BspQI	GCTCTTC	1 cut(s)	605
BspT104I	TTCGAA	1 cut(s)	95
BspT107I	GGYRCC	1 cut(s)	683
BspTNI	GGTCTC	1 cut(s)	76
BsrDI	GCAATG	1 cut(s)	921
BsrI	ACTGG	3 cut(s)	313, 682, 687
BssECI	CCNNGG	4 cut(s)	193, 574, 916, 995
BssMI	GATC	9 cut(s)	44, 168, 234, 241, 694, 715, 724, 729, 1009
BssT1I	CCWWGG	1 cut(s)	193
Bst2UI	CCWGG	4 cut(s)	144, 575, 997, 1041
Bst4CI	ACNGT	4 cut(s)	586, 851, 937, 976
Bst6I	CTCTTC	1 cut(s)	605
BstBAI	YACGTR	1 cut(s)	370
BstBI	TTCGAA	1 cut(s)	95
BstC8I	GCNNGC	4 cut(s)	124, 259, 475, 479
BstDEI	CTNAG	4 cut(s)	105, 219, 345, 483
BstF5I	GGATG	3 cut(s)	229, 493, 744
BstH2I	RGCGCY	1 cut(s)	33
BstHHI	GCGC	1 cut(s)	32
BstKTI	GATC	9 cut(s)	47, 171, 237, 244, 697, 718, 727, 732, 1012
BstMAI	GTCTC	2 cut(s)	76, 542
BstMBI	GATC	9 cut(s)	44, 168, 234, 241, 694, 715, 724, 729, 1009
BstMWI	GCNNNNNNNGC	4 cut(s)	38, 340, 355, 511
BstNI	CCWGG	4 cut(s)	144, 575, 997, 1041
BstNSI	RCATGY	2 cut(s)	261, 477
BstSCI	CCNGG	6 cut(s)	65, 142, 326, 573, 995, 1039
BstSFI	CTRYAG	1 cut(s)	827
BstSNI	TACGTA	1 cut(s)	370
BstV1I	GCAGC	4 cut(s)	25, 370, 514, 736
BstX2I	RGATCY	2 cut(s)	694, 724
BstYI	RGATCY	2 cut(s)	694, 724
Bsu15I	ATCGAT	1 cut(s)	47
Bsu36I	CCTNAGG	1 cut(s)	483
BsuTUI	ATCGAT	1 cut(s)	47
BtsCI	GGATG	3 cut(s)	229, 493, 744
BtsIMutI	CAGTG	2 cut(s)	675, 862
BveI	ACCTGC	1 cut(s)	399
Cac8I	GCNNGC	4 cut(s)	124, 259, 475, 479
CfoI	GCGC	1 cut(s)	32
ClaI	ATCGAT	1 cut(s)	47
CseI	GACGC	2 cut(s)	340, 479
Csp6I	GTAC	1 cut(s)	324
CviAII	CATG	5 cut(s)	258, 474, 516, 606, 979
CviJI	RGCY	9 cut(s)	115, 281, 361, 382, 423, 481, 505, 871, 895
CviKI_1	RGCY	9 cut(s)	115, 281, 361, 382, 423, 481, 505, 871, 895
CviQI	GTAC	1 cut(s)	324
DdeI	CTNAG	4 cut(s)	105, 219, 345, 483
DpnI	GATC	9 cut(s)	46, 170, 236, 243, 696, 717, 726, 731, 1011
DpnII	GATC	9 cut(s)	44, 168, 234, 241, 694, 715, 724, 729, 1009
Eam1104I	CTCTTC	1 cut(s)	605
EarI	CTCTTC	1 cut(s)	605
EciI	GGCGGA	1 cut(s)	49
Eco105I	TACGTA	1 cut(s)	370
Eco130I	CCWWGG	1 cut(s)	193
Eco31I	GGTCTC	1 cut(s)	76
Eco81I	CCTNAGG	1 cut(s)	483
EcoRI	GAATTC	1 cut(s)	1035
EcoRII	CCWGG	4 cut(s)	142, 573, 995, 1039
EcoT14I	CCWWGG	1 cut(s)	193
EcoT22I	ATGCAT	1 cut(s)	263
ErhI	CCWWGG	1 cut(s)	193
FaeI	CATG	5 cut(s)	261, 477, 519, 609, 982
FalI	AAGNNNNNCTT	2 cut(s)	896, 928
FatI	CATG	5 cut(s)	257, 473, 515, 605, 978
FbaI	TGATCA	2 cut(s)	168, 715
Fnu4HI	GCNGC	7 cut(s)	33, 36, 39, 63, 359, 503, 750
FokI	GGATG	3 cut(s)	236, 500, 751
Fsp4HI	GCNGC	7 cut(s)	33, 36, 39, 63, 359, 503, 750
FspBI	CTAG	2 cut(s)	27, 692
GlaI	GCGC	1 cut(s)	31
GluI	GCNGC	7 cut(s)	33, 36, 39, 63, 359, 503, 750
HaeII	RGCGCY	1 cut(s)	33
HapII	CCGG	3 cut(s)	42, 67, 328
HgaI	GACGC	2 cut(s)	340, 479
HhaI	GCGC	1 cut(s)	32
Hin1II	CATG	5 cut(s)	261, 477, 519, 609, 982
Hin6I	GCGC	1 cut(s)	30
HinP1I	GCGC	1 cut(s)	30
HincII	GTYRAC	1 cut(s)	882
HindII	GTYRAC	1 cut(s)	882
HindIII	AAGCTT	1 cut(s)	869
HinfI	GANTC	8 cut(s)	53, 400, 431, 460, 535, 823, 945, 1002
HpaII	CCGG	3 cut(s)	42, 67, 328
HphI	GGTGA	5 cut(s)	163, 395, 818, 925, 1019
Hpy166II	GTNNAC	2 cut(s)	589, 882
Hpy188I	TCNGA	3 cut(s)	274, 663, 729
Hpy188III	TCNNGA	4 cut(s)	221, 564, 692, 719
Hpy8I	GTNNAC	2 cut(s)	589, 882
HpyAV	CCTTC	2 cut(s)	658, 796
HpyCH4III	ACNGT	4 cut(s)	586, 851, 937, 976
HpyCH4IV	ACGT	3 cut(s)	161, 369, 555
HpyCH4V	TGCA	8 cut(s)	126, 257, 261, 293, 477, 605, 829, 968
HpyF10VI	GCNNNNNNNGC	4 cut(s)	38, 340, 355, 511
HpyF3I	CTNAG	4 cut(s)	105, 219, 345, 483
HpySE526I	ACGT	3 cut(s)	161, 369, 555
Hsp92II	CATG	5 cut(s)	261, 477, 519, 609, 982
HspAI	GCGC	1 cut(s)	30
Ksp22I	TGATCA	2 cut(s)	168, 715
Kzo9I	GATC	9 cut(s)	44, 168, 234, 241, 694, 715, 724, 729, 1009
LguI	GCTCTTC	1 cut(s)	605
LmnI	GCTCC	1 cut(s)	112
Lsp1109I	GCAGC	4 cut(s)	25, 370, 514, 736
MaeI	CTAG	2 cut(s)	27, 692
MaeII	ACGT	3 cut(s)	161, 369, 555
MaeIII	GTNAC	2 cut(s)	791, 820
MalI	GATC	9 cut(s)	46, 170, 236, 243, 696, 717, 726, 731, 1011
MboI	GATC	9 cut(s)	44, 168, 234, 241, 694, 715, 724, 729, 1009
MboII	GAAGA	7 cut(s)	15, 48, 175, 622, 793, 874, 877
MfeI	CAATTG	2 cut(s)	437, 507
MflI	RGATCY	2 cut(s)	694, 724
MlyI	GAGTC	3 cut(s)	544, 817, 996
MnlI	CCTC	7 cut(s)	276, 478, 715, 735, 926, 941, 1037
Mph1103I	ATGCAT	1 cut(s)	263
MroXI	GAANNNNTTC	2 cut(s)	430, 911
MseI	TTAA	3 cut(s)	543, 581, 1051
MslI	CAYNNNNRTG	1 cut(s)	818
MspA1I	CMGCKG	1 cut(s)	38
MspI	CCGG	3 cut(s)	42, 67, 328
MspR9I	CCNGG	6 cut(s)	67, 144, 328, 575, 997, 1041
MunI	CAATTG	2 cut(s)	437, 507
MvaI	CCWGG	4 cut(s)	144, 575, 997, 1041
MwoI	GCNNNNNNNGC	4 cut(s)	38, 340, 355, 511
NciI	CCSGG	2 cut(s)	67, 328
NdeII	GATC	9 cut(s)	44, 168, 234, 241, 694, 715, 724, 729, 1009
NlaIII	CATG	5 cut(s)	261, 477, 519, 609, 982
NlaIV	GGNNCC	1 cut(s)	685
NmeAIII	GCCGAG	1 cut(s)	897
NmuCI	GTSAC	2 cut(s)	791, 820
NsiI	ATGCAT	1 cut(s)	263
NspI	RCATGY	2 cut(s)	261, 477
NspV	TTCGAA	1 cut(s)	95
PaeI	GCATGC	2 cut(s)	261, 477
PciSI	GCTCTTC	1 cut(s)	605
PdmI	GAANNNNTTC	2 cut(s)	430, 911
PfeI	GAWTC	5 cut(s)	53, 400, 431, 460, 945
PfoI	TCCNGGA	1 cut(s)	1039
PkrI	GCNGC	7 cut(s)	34, 37, 40, 64, 360, 504, 751
PleI	GAGTC	3 cut(s)	543, 817, 996
PpsI	GAGTC	3 cut(s)	543, 817, 996
Ppu21I	YACGTR	1 cut(s)	370
Psp1406I	AACGTT	1 cut(s)	161
Psp6I	CCWGG	4 cut(s)	142, 573, 995, 1039
PspGI	CCWGG	4 cut(s)	142, 573, 995, 1039
PspN4I	GGNNCC	1 cut(s)	685
PstI	CTGCAG	1 cut(s)	831
PsuI	RGATCY	2 cut(s)	694, 724
RsaI	GTAC	1 cut(s)	325
RsaNI	GTAC	1 cut(s)	324
RseI	CAYNNNNRTG	1 cut(s)	818
SapI	GCTCTTC	1 cut(s)	605
SaqAI	TTAA	3 cut(s)	543, 581, 1051
SatI	GCNGC	7 cut(s)	33, 36, 39, 63, 359, 503, 750
Sau3AI	GATC	9 cut(s)	44, 168, 234, 241, 694, 715, 724, 729, 1009
SchI	GAGTC	3 cut(s)	544, 817, 996
ScrFI	CCNGG	6 cut(s)	67, 144, 328, 575, 997, 1041
SfcI	CTRYAG	1 cut(s)	827
SfuI	TTCGAA	1 cut(s)	95
SmiMI	CAYNNNNRTG	1 cut(s)	818
SmlI	CTYRAG	1 cut(s)	383
SmoI	CTYRAG	1 cut(s)	383
SnaBI	TACGTA	1 cut(s)	370
SphI	GCATGC	2 cut(s)	261, 477
SsiI	CCGC	5 cut(s)	33, 36, 60, 63, 406
SspMI	CTAG	2 cut(s)	27, 692
StyD4I	CCNGG	6 cut(s)	65, 142, 326, 573, 995, 1039
StyI	CCWWGG	1 cut(s)	193
TaaI	ACNGT	4 cut(s)	586, 851, 937, 976
TaiI	ACGT	3 cut(s)	164, 372, 558
TaqI	TCGA	2 cut(s)	47, 95
TauI	GCSGC	3 cut(s)	35, 38, 65
TfiI	GAWTC	5 cut(s)	53, 400, 431, 460, 945
Tru1I	TTAA	3 cut(s)	543, 581, 1051
Tru9I	TTAA	3 cut(s)	543, 581, 1051
TscAI	CASTG	2 cut(s)	682, 862
TseFI	GTSAC	2 cut(s)	791, 820
TseI	GCWGC	4 cut(s)	38, 358, 502, 749
Tsp45I	GTSAC	2 cut(s)	791, 820
TspDTI	ATGAA	2 cut(s)	175, 368
TspRI	CASTG	2 cut(s)	682, 862
XapI	RAATTY	3 cut(s)	73, 98, 1035
XbaI	TCTAGA	1 cut(s)	691
XceI	RCATGY	2 cut(s)	261, 477
XmnI	GAANNNNTTC	2 cut(s)	430, 911
XspI	CTAG	2 cut(s)	27, 692
Zsp2I	ATGCAT	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.