Rroxscaffold_1G00055650

ALA-interacting subunit 3-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
77208965 .. 77213099
4135 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00055650.1

Sequence Viewer

Length: 1050 bp
ATGAGTTCCAATACGGCGCCGTCCAGCTCAGCAGGCGCTGGATCTGCCGATTCAGCAGCTACCAGGAGGTCCAAGCGCCCCAAATATTCAAGATTTACTCAGCAGGAACTTCCAGCATGCAAGCCAATTCTCACGCCAAAATGGGTCATCTCAGCATTCATGCTCGTTGCAATCGTCTTCATTCCCATCGGAGTTGCTACCCTATTTGCTTCCCGAGATGTTGTTGAAATCGTTGATCGATATGAAACTGAGTGCATACCAGAGTCCTCTAGAAGTGATAAGGTCAAATACATCCAAACCCCAGGAAATAAACCATGCAACAGAACTCTGACGGTAAAAAAACACATGAAGCAGCCTATATATGTGTACTACCAGCTTGATAATTTCTATCAGAATCACCGCAGGTATGTGAAGAGCCGAAGTGATAAACAGTTGAAAGATCCAAACTCTGCAAATACAGTGACTGATTGTAAGCCTGAAGACAAGGCAAATGGTGCGTCTATTGTACCATGTGGGCTCATAGCTTGGAGTTTGTTCAATGACACTTATAGTTTTTCCCGCAACCAAAGCGAGCCATTGCCAGTGAACAAGAAGGGTATTTCATGGAAGAGTGACAGGGAGCACAAATTTGGCAAAAAGGTCTTTCCTACAAACTTTCAGAATTCAACTCTTAGAGGTGGTGCGTCTCTCAATGAATCCATTCCATTGAGTGAGCAGGAGGACCTTATTGTTTGGATGAGAACTGCTGCATTGCCAACATTCAGAAAATTATATGGGAAGATAGAGGTGGATCTTCAGCAAAATGATGTCATACATGTGACATTGGAGAACAATTACAACACCTACAGTTTTAGTGGAAAAAAGAAGCTCGTACTTTCTACCACTAGTTGGCTTGGTGGCAGGAATGACTTCCTTGGCATTGCCTATCTCACTGTTGGCGGGTTGTGCTTCTTTCTGGCCATGGCTTTCACAATTGTATATCTTGTTAAACCAAGGCAACTTGGAGATCCTTCCTATTTGTCATGGAACAGAAATCCTGGAGGGCACTAA

Protein Analysis

349

Amino Acids

39.25

Weight (kDa)

9.56

Isoelectric Point (pI)

41.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CDC50 PF03381 68 - 333 1.7e-92 LEM3 (ligand-effect modulator 3) family / CDC50 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 393
AccB1I GGYRCC 1 cut(s) 16
AccB7I CCANNNNNTGG 1 cut(s) 888
AciI CCGC 3 cut(s) 400, 559, 939
AclWI GGATC 4 cut(s) 49, 434, 798, 1001
AcoI YGGCCR 1 cut(s) 957
AcsI RAATTY 2 cut(s) 626, 661
AcuI CTGAAG 2 cut(s) 498, 779
AcyI GRCGYC 1 cut(s) 17
AfaI GTAC 3 cut(s) 368, 507, 873
AfiI CCNNNNNNNGG 1 cut(s) 888
AflIII ACRYGT 1 cut(s) 814
AgsI TTSAA 5 cut(s) 90, 227, 436, 538, 666
AhlI ACTAGT 1 cut(s) 884
AjnI CCWGG 3 cut(s) 62, 301, 1036
AluBI AGCT 5 cut(s) 27, 59, 376, 524, 868
AluI AGCT 5 cut(s) 27, 59, 376, 524, 868
Alw21I GWGCWC 1 cut(s) 624
Alw26I GTCTC 1 cut(s) 690
AlwI GGATC 4 cut(s) 49, 434, 798, 1001
AlwNI CAGNNNCTG 2 cut(s) 38, 464
Ama87I CYCGRG 1 cut(s) 213
AoxI GGCC 1 cut(s) 957
ApeKI GCWGC 3 cut(s) 56, 352, 746
ApoI RAATTY 2 cut(s) 626, 661
ArsI GACNNNNNNTTYG 2 cut(s) 482, 514
Asp700I GAANNNNTTC 2 cut(s) 699, 908
AspLEI GCGC 3 cut(s) 19, 38, 78
AspS9I GGNCC 2 cut(s) 69, 721
AsuHPI GGTGA 1 cut(s) 389
AvaI CYCGRG 1 cut(s) 213
AvaII GGWCC 2 cut(s) 69, 721
BaeGI GKGCMC 1 cut(s) 1047
BalI TGGCCA 1 cut(s) 959
BanI GGYRCC 1 cut(s) 16
BanII GRGCYC 1 cut(s) 519
BbsI GAAGAC 2 cut(s) 169, 486
Bbv12I GWGCWC 1 cut(s) 624
BbvI GCAGC 3 cut(s) 68, 364, 733
BccI CCATC 1 cut(s) 194
BceAI ACGGC 2 cut(s) 4, 30
BciT130I CCWGG 3 cut(s) 64, 303, 1038
BcoDI GTCTC 1 cut(s) 690
BcuI ACTAGT 1 cut(s) 884
BfaI CTAG 2 cut(s) 270, 885
BfmI CTRYAG 1 cut(s) 844
BfoI RGCGCY 3 cut(s) 20, 39, 79
BfuAI ACCTGC 1 cut(s) 393
BisI GCNGC 3 cut(s) 57, 353, 747
BlpI GCTNAGC 1 cut(s) 28
BlsI GCNGC 3 cut(s) 58, 354, 748
Bme1390I CCNGG 3 cut(s) 64, 303, 1038
Bme18I GGWCC 2 cut(s) 69, 721
BmeT110I CYCGRG 1 cut(s) 213
BmgT120I GGNCC 2 cut(s) 69, 721
BmiI GGNNCC 1 cut(s) 18
BmrFI CCNGG 3 cut(s) 64, 303, 1038
BpiI GAAGAC 2 cut(s) 169, 486
Bpu1102I GCTNAGC 1 cut(s) 28
Bsa29I ATCGAT 1 cut(s) 238
BsaHI GRCGYC 1 cut(s) 17
BsaJI CCNNGG 4 cut(s) 301, 913, 960, 992
Bsc4I CCNNNNNNNGG 1 cut(s) 888
Bse1I ACTGG 1 cut(s) 581
Bse3DI GCAATG 3 cut(s) 575, 749, 918
BseBI CCWGG 3 cut(s) 64, 303, 1038
BseCI ATCGAT 1 cut(s) 238
BseDI CCNNGG 4 cut(s) 301, 913, 960, 992
BseGI GGATG 2 cut(s) 291, 741
BseLI CCNNNNNNNGG 1 cut(s) 888
BseMI GCAATG 3 cut(s) 575, 749, 918
BseMII CTCAG 4 cut(s) 42, 113, 165, 240
BseNI ACTGG 1 cut(s) 581
BseSI GKGCMC 1 cut(s) 1047
BseXI GCAGC 3 cut(s) 68, 364, 733
BshFI GGCC 1 cut(s) 959
BshNI GGYRCC 1 cut(s) 16
BshVI ATCGAT 1 cut(s) 238
BsiHKAI GWGCWC 1 cut(s) 624
BsiHKCI CYCGRG 1 cut(s) 213
BslI CCNNNNNNNGG 1 cut(s) 888
BsmAI GTCTC 1 cut(s) 690
BsmBI CGTCTC 1 cut(s) 690
BsmI GAATGC 1 cut(s) 155
BsnI GGCC 1 cut(s) 959
BsoBI CYCGRG 1 cut(s) 213
Bsp1286I GDGCHC 3 cut(s) 519, 624, 1047
Bsp143I GATC 5 cut(s) 41, 235, 439, 790, 1006
Bsp1720I GCTNAGC 1 cut(s) 28
Bsp19I CCATGG 1 cut(s) 960
BspACI CCGC 3 cut(s) 400, 559, 939
BspANI GGCC 1 cut(s) 959
BspCNI CTCAG 4 cut(s) 41, 112, 164, 241
BspDI ATCGAT 1 cut(s) 238
BspLI GGNNCC 1 cut(s) 18
BspMI ACCTGC 1 cut(s) 393
BspPI GGATC 4 cut(s) 49, 434, 798, 1001
BspQI GCTCTTC 1 cut(s) 407
BspT107I GGYRCC 1 cut(s) 16
BsrDI GCAATG 3 cut(s) 575, 749, 918
BsrI ACTGG 1 cut(s) 581
BssECI CCNNGG 4 cut(s) 301, 913, 960, 992
BssMI GATC 5 cut(s) 41, 235, 439, 790, 1006
BssNI GRCGYC 1 cut(s) 17
BssT1I CCWWGG 3 cut(s) 913, 960, 992
Bst2UI CCWGG 3 cut(s) 64, 303, 1038
Bst4CI ACNGT 5 cut(s) 334, 432, 460, 848, 934
Bst6I CTCTTC 2 cut(s) 407, 602
BstACI GRCGYC 1 cut(s) 17
BstAPI GCANNNNNTGC 1 cut(s) 494
BstC8I GCNNGC 4 cut(s) 34, 118, 122, 572
BstDEI CTNAG 5 cut(s) 28, 99, 151, 249, 671
BstDSI CCRYGG 1 cut(s) 960
BstF5I GGATG 2 cut(s) 291, 741
BstH2I RGCGCY 3 cut(s) 20, 39, 79
BstHHI GCGC 3 cut(s) 19, 38, 78
BstKTI GATC 5 cut(s) 44, 238, 442, 793, 1009
BstMAI GTCTC 1 cut(s) 690
BstMBI GATC 5 cut(s) 41, 235, 439, 790, 1006
BstMWI GCNNNNNNNGC 6 cut(s) 33, 44, 53, 494, 567, 945
BstNI CCWGG 3 cut(s) 64, 303, 1038
BstNSI RCATGY 2 cut(s) 120, 818
BstSCI CCNGG 3 cut(s) 62, 301, 1036
BstSFI CTRYAG 1 cut(s) 844
BstSLI GKGCMC 1 cut(s) 1047
BstV1I GCAGC 3 cut(s) 68, 364, 733
BstV2I GAAGAC 2 cut(s) 169, 486
BstX2I RGATCY 4 cut(s) 41, 439, 790, 1006
BstYI RGATCY 4 cut(s) 41, 439, 790, 1006
Bsu15I ATCGAT 1 cut(s) 238
BsuRI GGCC 1 cut(s) 959
BsuTUI ATCGAT 1 cut(s) 238
BtgI CCRYGG 1 cut(s) 960
BtsCI GGATG 2 cut(s) 291, 741
BtsIMutI CAGTG 3 cut(s) 465, 588, 930
BveI ACCTGC 1 cut(s) 393
Cac8I GCNNGC 4 cut(s) 34, 118, 122, 572
CaiI CAGNNNCTG 2 cut(s) 38, 464
CfoI GCGC 3 cut(s) 19, 38, 78
Cfr13I GGNCC 2 cut(s) 69, 721
ClaI ATCGAT 1 cut(s) 238
CseI GACGC 2 cut(s) 486, 672
Csp6I GTAC 3 cut(s) 367, 506, 872
CviAII CATG 9 cut(s) 117, 160, 315, 346, 510, 603, 815, 961, 1023
CviQI GTAC 3 cut(s) 367, 506, 872
DdeI CTNAG 5 cut(s) 28, 99, 151, 249, 671
DinI GGCGCC 1 cut(s) 18
DpnI GATC 5 cut(s) 43, 237, 441, 792, 1008
DpnII GATC 5 cut(s) 41, 235, 439, 790, 1006
EaeI YGGCCR 1 cut(s) 957
Eam1104I CTCTTC 2 cut(s) 407, 602
EarI CTCTTC 2 cut(s) 407, 602
Eco130I CCWWGG 3 cut(s) 913, 960, 992
Eco24I GRGCYC 1 cut(s) 519
Eco47I GGWCC 2 cut(s) 69, 721
Eco57I CTGAAG 2 cut(s) 498, 779
Eco88I CYCGRG 1 cut(s) 213
EcoO109I RGGNCCY 1 cut(s) 721
EcoRI GAATTC 1 cut(s) 661
EcoRII CCWGG 3 cut(s) 62, 301, 1036
EcoT14I CCWWGG 3 cut(s) 913, 960, 992
EcoT38I GRGCYC 1 cut(s) 519
EgeI GGCGCC 1 cut(s) 18
EheI GGCGCC 1 cut(s) 18
ErhI CCWWGG 3 cut(s) 913, 960, 992
Esp3I CGTCTC 1 cut(s) 690
FaeI CATG 9 cut(s) 120, 163, 318, 349, 513, 606, 818, 964, 1026
FatI CATG 9 cut(s) 116, 159, 314, 345, 509, 602, 814, 960, 1022
FauI CCCGC 2 cut(s) 566, 932
Fnu4HI GCNGC 3 cut(s) 57, 353, 747
FokI GGATG 2 cut(s) 278, 748
FriOI GRGCYC 1 cut(s) 519
Fsp4HI GCNGC 3 cut(s) 57, 353, 747
FspBI CTAG 2 cut(s) 270, 885
GlaI GCGC 3 cut(s) 18, 37, 77
GluI GCNGC 3 cut(s) 57, 353, 747
HaeII RGCGCY 3 cut(s) 20, 39, 79
HaeIII GGCC 1 cut(s) 959
HgaI GACGC 2 cut(s) 486, 672
HhaI GCGC 3 cut(s) 19, 38, 78
Hin1I GRCGYC 1 cut(s) 17
Hin1II CATG 9 cut(s) 120, 163, 318, 349, 513, 606, 818, 964, 1026
Hin6I GCGC 3 cut(s) 17, 36, 76
HinP1I GCGC 3 cut(s) 17, 36, 76
HinfI GANTC 4 cut(s) 50, 263, 394, 695
HphI GGTGA 1 cut(s) 389
Hpy166II GTNNAC 2 cut(s) 367, 586
Hpy188I TCNGA 5 cut(s) 191, 330, 393, 660, 764
Hpy188III TCNNGA 3 cut(s) 90, 213, 270
Hpy8I GTNNAC 2 cut(s) 367, 586
HpyAV CCTTC 2 cut(s) 586, 1020
HpyCH4III ACNGT 5 cut(s) 334, 432, 460, 848, 934
HpyCH4V TGCA 6 cut(s) 120, 170, 255, 318, 452, 749
HpyF10VI GCNNNNNNNGC 6 cut(s) 33, 44, 53, 494, 567, 945
HpyF3I CTNAG 5 cut(s) 28, 99, 151, 249, 671
Hsp92I GRCGYC 1 cut(s) 17
Hsp92II CATG 9 cut(s) 120, 163, 318, 349, 513, 606, 818, 964, 1026
HspAI GCGC 3 cut(s) 17, 36, 76
KasI GGCGCC 1 cut(s) 16
Kzo9I GATC 5 cut(s) 41, 235, 439, 790, 1006
LguI GCTCTTC 1 cut(s) 407
LmnI GCTCC 1 cut(s) 619
Lsp1109I GCAGC 3 cut(s) 68, 364, 733
MaeI CTAG 2 cut(s) 270, 885
MaeIII GTNAC 3 cut(s) 460, 611, 817
MalI GATC 5 cut(s) 43, 237, 441, 792, 1008
MboI GATC 5 cut(s) 41, 235, 439, 790, 1006
MboII GAAGA 6 cut(s) 169, 424, 491, 619, 785, 790
MfeI CAATTG 1 cut(s) 972
MflI RGATCY 4 cut(s) 41, 439, 790, 1006
MhlI GDGCHC 3 cut(s) 519, 624, 1047
MlsI TGGCCA 1 cut(s) 959
MluCI AATT 7 cut(s) 126, 382, 626, 661, 767, 832, 972
MluNI TGGCCA 1 cut(s) 959
Mly113I GGCGCC 1 cut(s) 17
MlyI GAGTC 1 cut(s) 272
MnlI CCTC 6 cut(s) 60, 277, 668, 712, 778, 1034
Mox20I TGGCCA 1 cut(s) 959
MroXI GAANNNNTTC 2 cut(s) 699, 908
MscI TGGCCA 1 cut(s) 959
MseI TTAA 1 cut(s) 987
MslI CAYNNNNRTG 1 cut(s) 815
Msp20I TGGCCA 1 cut(s) 959
MspR9I CCNGG 3 cut(s) 64, 303, 1038
MunI CAATTG 1 cut(s) 972
Mva1269I GAATGC 1 cut(s) 155
MvaI CCWGG 3 cut(s) 64, 303, 1038
MwoI GCNNNNNNNGC 6 cut(s) 33, 44, 53, 494, 567, 945
NarI GGCGCC 1 cut(s) 17
NcoI CCATGG 1 cut(s) 960
NdeII GATC 5 cut(s) 41, 235, 439, 790, 1006
NlaIII CATG 9 cut(s) 120, 163, 318, 349, 513, 606, 818, 964, 1026
NlaIV GGNNCC 1 cut(s) 18
NmuCI GTSAC 3 cut(s) 460, 611, 817
NspI RCATGY 2 cut(s) 120, 818
PaeI GCATGC 1 cut(s) 120
PciI ACATGT 1 cut(s) 814
PciSI GCTCTTC 1 cut(s) 407
PcsI WCGNNNNNNNCGW 1 cut(s) 171
PctI GAATGC 1 cut(s) 155
PdmI GAANNNNTTC 2 cut(s) 699, 908
PfeI GAWTC 3 cut(s) 50, 394, 695
PflMI CCANNNNNTGG 1 cut(s) 888
PfoI TCCNGGA 1 cut(s) 1036
PkrI GCNGC 3 cut(s) 58, 354, 748
PleI GAGTC 1 cut(s) 271
PluTI GGCGCC 1 cut(s) 20
PpsI GAGTC 1 cut(s) 271
PpuMI RGGWCCY 1 cut(s) 721
PscI ACATGT 1 cut(s) 814
Psp5II RGGWCCY 1 cut(s) 721
Psp6I CCWGG 3 cut(s) 62, 301, 1036
PspGI CCWGG 3 cut(s) 62, 301, 1036
PspN4I GGNNCC 1 cut(s) 18
PspPI GGNCC 2 cut(s) 69, 721
PspPPI RGGWCCY 1 cut(s) 721
PstNI CAGNNNCTG 2 cut(s) 38, 464
PsuI RGATCY 4 cut(s) 41, 439, 790, 1006
RsaI GTAC 3 cut(s) 368, 507, 873
RsaNI GTAC 3 cut(s) 367, 506, 872
RseI CAYNNNNRTG 1 cut(s) 815
SapI GCTCTTC 1 cut(s) 407
SaqAI TTAA 1 cut(s) 987
SatI GCNGC 3 cut(s) 57, 353, 747
Sau3AI GATC 5 cut(s) 41, 235, 439, 790, 1006
Sau96I GGNCC 2 cut(s) 69, 721
SchI GAGTC 1 cut(s) 272
ScrFI CCNGG 3 cut(s) 64, 303, 1038
SduI GDGCHC 3 cut(s) 519, 624, 1047
SfcI CTRYAG 1 cut(s) 844
SfoI GGCGCC 1 cut(s) 18
SinI GGWCC 2 cut(s) 69, 721
SmiMI CAYNNNNRTG 1 cut(s) 815
SpeI ACTAGT 1 cut(s) 884
SphI GCATGC 1 cut(s) 120
Sse9I AATT 7 cut(s) 126, 382, 626, 661, 767, 832, 972
SsiI CCGC 3 cut(s) 400, 559, 939
SspDI GGCGCC 1 cut(s) 16
SspI AATATT 1 cut(s) 86
SspMI CTAG 2 cut(s) 270, 885
StyD4I CCNGG 3 cut(s) 62, 301, 1036
StyI CCWWGG 3 cut(s) 913, 960, 992
TaaI ACNGT 5 cut(s) 334, 432, 460, 848, 934
TaqI TCGA 1 cut(s) 238
TasI AATT 7 cut(s) 126, 382, 626, 661, 767, 832, 972
TatI WGTACW 1 cut(s) 366
TfiI GAWTC 3 cut(s) 50, 394, 695
Tru1I TTAA 1 cut(s) 987
Tru9I TTAA 1 cut(s) 987
TscAI CASTG 3 cut(s) 465, 588, 937
TseFI GTSAC 3 cut(s) 460, 611, 817
TseI GCWGC 3 cut(s) 56, 352, 746
Tsp45I GTSAC 3 cut(s) 460, 611, 817
TspDTI ATGAA 6 cut(s) 148, 169, 258, 362, 591, 708
TspRI CASTG 3 cut(s) 465, 588, 937
Van91I CCANNNNNTGG 1 cut(s) 888
VpaK11BI GGWCC 2 cut(s) 69, 721
XapI RAATTY 2 cut(s) 626, 661
XbaI TCTAGA 1 cut(s) 269
XceI RCATGY 2 cut(s) 120, 818
XmnI GAANNNNTTC 2 cut(s) 699, 908
XspI CTAG 2 cut(s) 270, 885
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.