Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001483

Physical Location & Seq

Genomic Coordinates Reverse (-)

20275534 .. 20277981

Gene Structure 2448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G54320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGAGTTCCAATACGGCGTCGTCCAGCGCGGGGGCAGCCGGATCGGGAGATTCTTCCGCCGCTAGGAAGAATTCAAAGCGACCCAAGTATTCGAAGTTCACACAGCAGGAGCTTCCAGCTTGCAAGCCAATTCTAACCCCTGGTTGGGTCATTTCGACATTTTTGATAGTCAGTGTTATCTTTATTCCCCTTGGAGTTATCTCCCTTTTCGCTTCCCAGGATGTTGTGGAGATCGTTGATCGGTATGATACTGAGTGCATTCCGGCACCTGCTAGGACTAACAAGGTTGCATATATTCAAGGAGATGGAGATAAAGTTTGTAACCGGGATCTTAAAGTGACAAAGCGTATGAAGCAACCTATCTATGTTTATTACCAACTTGAGAATTTCTACCAGAATCACCGAAGGTATGTAAAAAGTCGAAGTGATTCACAGTTGAGAAGTACAAAATACGAGAATCAAATAAGTGCATGCAAGCCTGAGGATGATGTTGGTGGGCAGCCGATTGTGCCGTGTGGTCTAATTGCTTGGAGTCTTTTTAACGACACATACGCGTTATCAAGAAACAATGTAAGCCTAGCTGTGAACAAAAAAGGCATTGCATGGAAGAGTGACAAGGAACACAAGTTTGGGAACAAGGTCTTCCCCAAGAATTTTCAAAAGGGGAATATCACAGGTGGTGCTACTTTAGATCCAAGAATACCGCTTAGTGAACAAGAAGATCTCATTGTGTGGATGAGAACCGCAGCATTGCCAACATTTAGAAAACTTTACGGAAAGATAGAGTCTGACCTCGAGATGGGTGACACCATACACGTTAAGCTGAACAACAACTACAACACGTACAGCTTCAATGGAAAGAAGAAGCTTGTTTTGTCAACCACTAGTTGGCTGGGTGGGAAGAACGATTTCCTTGGCATTGCTTACCTGACAGTTGGCGGGATCTGTTTCATTTTGGCCCTCGCATTTACCATCATGTACCTTGTGAAACCCAGGCGTCTTGGAGATCCGTCCTACTTGTCATGGAATAGAAATCCTGGAGGTCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0005789 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0008150 GO:0010008 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0031090 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0033036 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0071702 GO:0071944 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDC50

Protein Analysis

349

Amino Acids

38.95

Weight (kDa)

9.57

Isoelectric Point (pI)

41.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDC50	PF03381	69 - 333	2.7e-93	LEM3 (ligand-effect modulator 3) family / CDC50 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001483)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16360 AT1G16360 AT1G16360 AT1G16360 AT1G16360 AT1G54320 AT1G79450 AT1G79450 AT3G12740
fragaria_vesca	FvH4_1g27280 FvH4_1g27280 FvH4_1g27280 FvH4_1g27280 FvH4_1g27280 FvH4_1g27280 FvH4_3g14090
malus_domestica	MD05G1238200.v1.1 MD09G1280100.v1.1 MD10G1216500.v1.1 MD17G1286800.v1.1
prunus_persica	Prupe.3G014200_v2.0.a1 Prupe.3G014200_v2.0.a1 Prupe.3G014200_v2.0.a1 Prupe.4G128200_v2.0.a1 Prupe.4G128200_v2.0.a1
pyrus_communis	pycom05g21420 pycom09g18820 pycom17g27020
rosa_chinensis	RchiOBHm_Chr3g0488711 RchiOBHm_Chr5g0023401
rosa_laevigata	RLG00000022929 RLG00000032719
rosa_multiflora	Rmu_sc0000265.1_g000021 Rmu_sc0004629.1_g000005 Rmu_sc0006389.1_g000001
rosa_roxburghii	Rroxscaffold_1G00055650 Rroxscaffold_1G00055940
rosa_rugosa	Rorug03G0240900 Rorug05G0078900
rosa_samantha	Rh3AG289200 Rh3BG326000 Rh3CG323700 Rh3DG322000 Rh5AG165800 Rh5BG165000 Rh5CG179900 Rh5DG166500
rosa_wichuraiana	Rw0G013700 Rw3G025600 Rw5G014920 Rw5G015080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	277
Acc36I	ACCTGC	1 cut(s)	277
AccB1I	GGYRCC	1 cut(s)	265
AccB7I	CCANNNNNTGG	1 cut(s)	888
AccII	CGCG	2 cut(s)	29, 554
AciI	CCGC	6 cut(s)	29, 57, 60, 704, 744, 939
AclWI	GGATC	5 cut(s)	49, 336, 686, 950, 1001
AcsI	RAATTY	3 cut(s)	70, 385, 652
AcyI	GRCGYC	2 cut(s)	17, 997
AfaI	GTAC	3 cut(s)	445, 845, 980
AfiI	CCNNNNNNNGG	6 cut(s)	30, 63, 144, 145, 799, 888
AflIII	ACRYGT	3 cut(s)	552, 814, 840
AgsI	TTSAA	4 cut(s)	75, 299, 659, 853
AhlI	ACTAGT	1 cut(s)	884
AjnI	CCWGG	4 cut(s)	139, 216, 992, 1036
AjuI	GAANNNNNNNTTGG	2 cut(s)	612, 644
AluBI	AGCT	6 cut(s)	112, 119, 581, 823, 849, 868
AluI	AGCT	6 cut(s)	112, 119, 581, 823, 849, 868
AlwI	GGATC	5 cut(s)	49, 336, 686, 950, 1001
Ama87I	CYCGRG	1 cut(s)	794
AoxI	GGCC	1 cut(s)	957
ApeKI	GCWGC	3 cut(s)	35, 499, 746
ApoI	RAATTY	3 cut(s)	70, 385, 652
Asp700I	GAANNNNTTC	2 cut(s)	427, 908
AspLEI	GCGC	1 cut(s)	29
AspS9I	GGNCC	1 cut(s)	958
AsuC2I	CCSGG	1 cut(s)	326
AsuHPI	GGTGA	2 cut(s)	392, 815
AsuII	TTCGAA	1 cut(s)	92
AvaI	CYCGRG	1 cut(s)	794
AxyI	CCTNAGG	1 cut(s)	480
BanI	GGYRCC	1 cut(s)	265
BbsI	GAAGAC	1 cut(s)	634
BbvI	GCAGC	3 cut(s)	47, 511, 758
BccI	CCATC	3 cut(s)	299, 793, 980
BceAI	ACGGC	2 cut(s)	30, 496
BcgI	CGANNNNNNTGC	2 cut(s)	24, 58
BciT130I	CCWGG	4 cut(s)	141, 218, 994, 1038
BcnI	CCSGG	1 cut(s)	326
BcuI	ACTAGT	1 cut(s)	884
BfaI	CTAG	4 cut(s)	63, 273, 578, 885
BfuAI	ACCTGC	1 cut(s)	277
BglII	AGATCT	1 cut(s)	721
BisI	GCNGC	4 cut(s)	36, 60, 500, 747
BlsI	GCNGC	4 cut(s)	37, 61, 501, 748
Bme1390I	CCNGG	5 cut(s)	141, 218, 326, 994, 1038
BmeT110I	CYCGRG	1 cut(s)	794
BmgT120I	GGNCC	1 cut(s)	958
BmiI	GGNNCC	1 cut(s)	267
BmrFI	CCNGG	5 cut(s)	141, 218, 326, 994, 1038
BpiI	GAAGAC	1 cut(s)	634
Bpu14I	TTCGAA	1 cut(s)	92
BpuEI	CTTGAG	1 cut(s)	401
BpuMI	CCSGG	1 cut(s)	326
BsaAI	YACGTR	1 cut(s)	843
BsaHI	GRCGYC	2 cut(s)	17, 997
BsaJI	CCNNGG	5 cut(s)	139, 190, 216, 913, 992
BsaXI	ACNNNNNCTCC	2 cut(s)	300, 330
Bsc4I	CCNNNNNNNGG	6 cut(s)	30, 63, 144, 145, 799, 888
Bse21I	CCTNAGG	1 cut(s)	480
Bse3DI	GCAATG	3 cut(s)	597, 749, 918
BseBI	CCWGG	4 cut(s)	141, 218, 994, 1038
BseDI	CCNNGG	5 cut(s)	139, 190, 216, 913, 992
BseGI	GGATG	3 cut(s)	226, 490, 741
BseLI	CCNNNNNNNGG	6 cut(s)	30, 63, 144, 145, 799, 888
BseMI	GCAATG	3 cut(s)	597, 749, 918
BseMII	CTCAG	2 cut(s)	243, 471
BseXI	GCAGC	3 cut(s)	47, 511, 758
BseYI	CCCAGC	1 cut(s)	892
Bsh1236I	CGCG	2 cut(s)	29, 554
BshFI	GGCC	1 cut(s)	959
BshNI	GGYRCC	1 cut(s)	265
BsiHKCI	CYCGRG	1 cut(s)	794
BsiSI	CCGG	3 cut(s)	39, 263, 325
BslI	CCNNNNNNNGG	6 cut(s)	30, 63, 144, 145, 799, 888
BsmI	GAATGC	1 cut(s)	258
BsnI	GGCC	1 cut(s)	959
BsoBI	CYCGRG	1 cut(s)	794
Bsp119I	TTCGAA	1 cut(s)	92
Bsp143I	GATC	8 cut(s)	41, 231, 238, 328, 691, 721, 942, 1006
BspACI	CCGC	6 cut(s)	29, 57, 60, 704, 744, 939
BspANI	GGCC	1 cut(s)	959
BspCNI	CTCAG	2 cut(s)	244, 472
BspFNI	CGCG	2 cut(s)	29, 554
BspLI	GGNNCC	1 cut(s)	267
BspMI	ACCTGC	1 cut(s)	277
BspPI	GGATC	5 cut(s)	49, 336, 686, 950, 1001
BspT104I	TTCGAA	1 cut(s)	92
BspT107I	GGYRCC	1 cut(s)	265
BsrDI	GCAATG	3 cut(s)	597, 749, 918
BssECI	CCNNGG	5 cut(s)	139, 190, 216, 913, 992
BssMI	GATC	8 cut(s)	41, 231, 238, 328, 691, 721, 942, 1006
BssNI	GRCGYC	2 cut(s)	17, 997
BssT1I	CCWWGG	2 cut(s)	190, 913
Bst2UI	CCWGG	4 cut(s)	141, 218, 994, 1038
Bst4CI	ACNGT	2 cut(s)	435, 934
Bst6I	CTCTTC	1 cut(s)	602
BstACI	GRCGYC	2 cut(s)	17, 997
BstBAI	YACGTR	1 cut(s)	843
BstBI	TTCGAA	1 cut(s)	92
BstC8I	GCNNGC	4 cut(s)	121, 125, 472, 476
BstDEI	CTNAG	3 cut(s)	252, 480, 707
BstF5I	GGATG	3 cut(s)	226, 490, 741
BstFNI	CGCG	2 cut(s)	29, 554
BstHHI	GCGC	1 cut(s)	29
BstKTI	GATC	8 cut(s)	44, 234, 241, 331, 694, 724, 945, 1009
BstMBI	GATC	8 cut(s)	41, 231, 238, 328, 691, 721, 942, 1006
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 352, 508
BstNI	CCWGG	4 cut(s)	141, 218, 994, 1038
BstNSI	RCATGY	1 cut(s)	474
BstSCI	CCNGG	5 cut(s)	139, 216, 324, 992, 1036
BstUI	CGCG	2 cut(s)	29, 554
BstV1I	GCAGC	3 cut(s)	47, 511, 758
BstV2I	GAAGAC	1 cut(s)	634
BstX2I	RGATCY	5 cut(s)	328, 691, 721, 942, 1006
BstYI	RGATCY	5 cut(s)	328, 691, 721, 942, 1006
Bsu36I	CCTNAGG	1 cut(s)	480
BsuRI	GGCC	1 cut(s)	959
BtsCI	GGATG	3 cut(s)	226, 490, 741
BtsIMutI	CAGTG	1 cut(s)	178
BveI	ACCTGC	1 cut(s)	277
Cac8I	GCNNGC	4 cut(s)	121, 125, 472, 476
CfoI	GCGC	1 cut(s)	29
Cfr13I	GGNCC	1 cut(s)	958
CseI	GACGC	2 cut(s)	6, 986
Csp6I	GTAC	3 cut(s)	444, 844, 979
CviAII	CATG	4 cut(s)	471, 603, 976, 1023
CviQI	GTAC	3 cut(s)	444, 844, 979
DdeI	CTNAG	3 cut(s)	252, 480, 707
DpnI	GATC	8 cut(s)	43, 233, 240, 330, 693, 723, 944, 1008
DpnII	GATC	8 cut(s)	41, 231, 238, 328, 691, 721, 942, 1006
Eam1104I	CTCTTC	1 cut(s)	602
EarI	CTCTTC	1 cut(s)	602
EciI	GGCGGA	1 cut(s)	46
Eco130I	CCWWGG	2 cut(s)	190, 913
Eco81I	CCTNAGG	1 cut(s)	480
Eco88I	CYCGRG	1 cut(s)	794
EcoRI	GAATTC	1 cut(s)	70
EcoRII	CCWGG	4 cut(s)	139, 216, 992, 1036
EcoT14I	CCWWGG	2 cut(s)	190, 913
ErhI	CCWWGG	2 cut(s)	190, 913
FaeI	CATG	4 cut(s)	474, 606, 979, 1026
FatI	CATG	4 cut(s)	470, 602, 975, 1022
FauI	CCCGC	2 cut(s)	22, 932
Fnu4HI	GCNGC	4 cut(s)	36, 60, 500, 747
FokI	GGATG	3 cut(s)	233, 497, 748
Fsp4HI	GCNGC	4 cut(s)	36, 60, 500, 747
FspBI	CTAG	4 cut(s)	63, 273, 578, 885
GlaI	GCGC	1 cut(s)	28
GluI	GCNGC	4 cut(s)	36, 60, 500, 747
GsaI	CCCAGC	1 cut(s)	896
HaeIII	GGCC	1 cut(s)	959
HapII	CCGG	3 cut(s)	39, 263, 325
HgaI	GACGC	2 cut(s)	6, 986
HhaI	GCGC	1 cut(s)	29
Hin1I	GRCGYC	2 cut(s)	17, 997
Hin1II	CATG	4 cut(s)	474, 606, 979, 1026
Hin6I	GCGC	1 cut(s)	27
HinP1I	GCGC	1 cut(s)	27
HincII	GTYRAC	1 cut(s)	879
HindII	GTYRAC	1 cut(s)	879
HindIII	AAGCTT	1 cut(s)	866
HinfI	GANTC	6 cut(s)	50, 397, 428, 457, 532, 785
HpaII	CCGG	3 cut(s)	39, 263, 325
HphI	GGTGA	2 cut(s)	392, 815
Hpy166II	GTNNAC	4 cut(s)	99, 586, 713, 879
Hpy188I	TCNGA	1 cut(s)	790
Hpy188III	TCNNGA	3 cut(s)	45, 561, 796
Hpy8I	GTNNAC	4 cut(s)	99, 586, 713, 879
Hpy99I	CGWCG	1 cut(s)	22
HpyAV	CCTTC	1 cut(s)	399
HpyCH4III	ACNGT	2 cut(s)	435, 934
HpyCH4IV	ACGT	2 cut(s)	816, 842
HpyCH4V	TGCA	6 cut(s)	123, 258, 290, 470, 474, 602
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 352, 508
HpyF3I	CTNAG	3 cut(s)	252, 480, 707
HpySE526I	ACGT	2 cut(s)	816, 842
Hsp92I	GRCGYC	2 cut(s)	17, 997
Hsp92II	CATG	4 cut(s)	474, 606, 979, 1026
HspAI	GCGC	1 cut(s)	27
Kzo9I	GATC	8 cut(s)	41, 231, 238, 328, 691, 721, 942, 1006
LmnI	GCTCC	1 cut(s)	109
Lsp1109I	GCAGC	3 cut(s)	47, 511, 758
MaeI	CTAG	4 cut(s)	63, 273, 578, 885
MaeII	ACGT	2 cut(s)	816, 842
MaeIII	GTNAC	4 cut(s)	320, 337, 611, 803
MalI	GATC	8 cut(s)	43, 233, 240, 330, 693, 723, 944, 1008
MboI	GATC	8 cut(s)	41, 231, 238, 328, 691, 721, 942, 1006
MboII	GAAGA	7 cut(s)	45, 79, 619, 634, 731, 874, 913
MflI	RGATCY	5 cut(s)	328, 691, 721, 942, 1006
MluCI	AATT	5 cut(s)	70, 129, 385, 522, 652
MluI	ACGCGT	1 cut(s)	552
MlyI	GAGTC	2 cut(s)	541, 794
MnlI	CCTC	4 cut(s)	475, 803, 971, 1034
MroXI	GAANNNNTTC	2 cut(s)	427, 908
MseI	TTAA	3 cut(s)	333, 540, 819
MspI	CCGG	3 cut(s)	39, 263, 325
MspR9I	CCNGG	5 cut(s)	141, 218, 326, 994, 1038
Mva1269I	GAATGC	1 cut(s)	258
MvaI	CCWGG	4 cut(s)	141, 218, 994, 1038
MvnI	CGCG	2 cut(s)	29, 554
MwoI	GCNNNNNNNGC	3 cut(s)	35, 352, 508
NciI	CCSGG	1 cut(s)	326
NdeII	GATC	8 cut(s)	41, 231, 238, 328, 691, 721, 942, 1006
NlaIII	CATG	4 cut(s)	474, 606, 979, 1026
NlaIV	GGNNCC	1 cut(s)	267
NmuCI	GTSAC	3 cut(s)	337, 611, 803
NspI	RCATGY	1 cut(s)	474
NspV	TTCGAA	1 cut(s)	92
PaeI	GCATGC	1 cut(s)	474
PaeR7I	CTCGAG	1 cut(s)	794
PaqCI	CACCTGC	1 cut(s)	277
PctI	GAATGC	1 cut(s)	258
PdmI	GAANNNNTTC	2 cut(s)	427, 908
PfeI	GAWTC	4 cut(s)	50, 397, 428, 457
PflMI	CCANNNNNTGG	1 cut(s)	888
PfoI	TCCNGGA	1 cut(s)	1036
PkrI	GCNGC	4 cut(s)	37, 61, 501, 748
PleI	GAGTC	2 cut(s)	540, 793
PpsI	GAGTC	2 cut(s)	540, 793
Ppu21I	YACGTR	1 cut(s)	843
Psp6I	CCWGG	4 cut(s)	139, 216, 992, 1036
PspFI	CCCAGC	1 cut(s)	892
PspGI	CCWGG	4 cut(s)	139, 216, 992, 1036
PspN4I	GGNNCC	1 cut(s)	267
PspPI	GGNCC	1 cut(s)	958
PsrI	GAACNNNNNNTAC	4 cut(s)	80, 112, 818, 850
PsuI	RGATCY	5 cut(s)	328, 691, 721, 942, 1006
RsaI	GTAC	3 cut(s)	445, 845, 980
RsaNI	GTAC	3 cut(s)	444, 844, 979
SaqAI	TTAA	3 cut(s)	333, 540, 819
SatI	GCNGC	4 cut(s)	36, 60, 500, 747
Sau3AI	GATC	8 cut(s)	41, 231, 238, 328, 691, 721, 942, 1006
Sau96I	GGNCC	1 cut(s)	958
SchI	GAGTC	2 cut(s)	541, 794
ScrFI	CCNGG	5 cut(s)	141, 218, 326, 994, 1038
Sfr274I	CTCGAG	1 cut(s)	794
SfuI	TTCGAA	1 cut(s)	92
SlaI	CTCGAG	1 cut(s)	794
SmlI	CTYRAG	2 cut(s)	380, 794
SmoI	CTYRAG	2 cut(s)	380, 794
SpeI	ACTAGT	1 cut(s)	884
SphI	GCATGC	1 cut(s)	474
Sse9I	AATT	5 cut(s)	70, 129, 385, 522, 652
SsiI	CCGC	6 cut(s)	29, 57, 60, 704, 744, 939
SspMI	CTAG	4 cut(s)	63, 273, 578, 885
StyD4I	CCNGG	5 cut(s)	139, 216, 324, 992, 1036
StyI	CCWWGG	2 cut(s)	190, 913
TaaI	ACNGT	2 cut(s)	435, 934
TaiI	ACGT	2 cut(s)	819, 845
TaqI	TCGA	4 cut(s)	92, 155, 421, 795
TasI	AATT	5 cut(s)	70, 129, 385, 522, 652
TatI	WGTACW	1 cut(s)	443
TauI	GCSGC	1 cut(s)	62
TfiI	GAWTC	4 cut(s)	50, 397, 428, 457
Tru1I	TTAA	3 cut(s)	333, 540, 819
Tru9I	TTAA	3 cut(s)	333, 540, 819
TscAI	CASTG	1 cut(s)	178
TseFI	GTSAC	3 cut(s)	337, 611, 803
TseI	GCWGC	3 cut(s)	35, 499, 746
Tsp45I	GTSAC	3 cut(s)	337, 611, 803
TspDTI	ATGAA	2 cut(s)	365, 940
TspGWI	ACGGA	2 cut(s)	789, 999
TspRI	CASTG	1 cut(s)	178
Van91I	CCANNNNNTGG	1 cut(s)	888
XapI	RAATTY	3 cut(s)	70, 385, 652
XceI	RCATGY	1 cut(s)	474
XcmI	CCANNNNNNNNNTGG	1 cut(s)	889
XhoI	CTCGAG	1 cut(s)	794
XmnI	GAANNNNTTC	2 cut(s)	427, 908
XspI	CTAG	4 cut(s)	63, 273, 578, 885

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.