Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001483

Physical Location & Seq

Genomic Coordinates Forward (+)

6825654 .. 6827131

Gene Structure 1478 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0078900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGACGATTGTAGAGATGCAAGTGCACATGGACTGTTCTGGCTGTGAGAACAAGATAAAGAAAGCTCTCAAAAAGCTTAAAGGAGTAGACGATATTGACGTGGATATAAACATGCAGAAGGTGACTGTCATGGGATGGGCTAAACAAGAGAAGGTTTTAAAGGCAGTGAGGAGGACTGGAAGGACAGCTGAGCTTTGGCCTTACCCTTACAACCCTGAATATGGTCACAACCTTAATGTTCAGTACTACCAGCAGCATCAGCCCCGCGATGGCCACGAACATCACCACCACCACCACCATCATGATCATCAAAGTAAACACAAGATTACCACCTACAATTCGATTCCCAATTACTCGTCTTATTCGTACAATTACTACAAGCATGGCTACAGTGGCAAGGAGCATGGCTATTATCAGCCTCCTCCTTACTCCACCATGTTTAATGAGCAGGACACTGCTGTGTTCAGTGATGAAAACCCTCATGCCTGTTCCATTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0005789 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0008150 GO:0010008 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0031090 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0033036 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0071702 GO:0071944 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDC50

Protein Analysis

166

Amino Acids

19.57

Weight (kDa)

7.3

Isoelectric Point (pI)

23.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	8 - 61	7.9e-16	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001483)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16360 AT1G16360 AT1G16360 AT1G16360 AT1G16360 AT1G54320 AT1G79450 AT1G79450 AT3G12740
fragaria_vesca	FvH4_1g27280 FvH4_1g27280 FvH4_1g27280 FvH4_1g27280 FvH4_1g27280 FvH4_1g27280 FvH4_3g14090
malus_domestica	MD05G1238200.v1.1 MD09G1280100.v1.1 MD10G1216500.v1.1 MD17G1286800.v1.1
prunus_persica	Prupe.3G014200_v2.0.a1 Prupe.3G014200_v2.0.a1 Prupe.3G014200_v2.0.a1 Prupe.4G128200_v2.0.a1 Prupe.4G128200_v2.0.a1
pyrus_communis	pycom05g21420 pycom09g18820 pycom17g27020
rosa_chinensis	RchiOBHm_Chr3g0488711 RchiOBHm_Chr5g0023401
rosa_laevigata	RLG00000022929 RLG00000032719
rosa_multiflora	Rmu_sc0000265.1_g000021 Rmu_sc0004629.1_g000005 Rmu_sc0006389.1_g000001
rosa_roxburghii	Rroxscaffold_1G00055650 Rroxscaffold_1G00055940
rosa_rugosa	Rorug03G0240900 Rorug05G0078900
rosa_samantha	Rh3AG289200 Rh3BG326000 Rh3CG323700 Rh3DG322000 Rh5AG165800 Rh5BG165000 Rh5CG179900 Rh5DG166500
rosa_wichuraiana	Rw0G013700 Rw3G025600 Rw5G014920 Rw5G015080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	87
AccII	CGCG	1 cut(s)	267
AciI	CCGC	1 cut(s)	265
AcoI	YGGCCR	1 cut(s)	271
AfaI	GTAC	2 cut(s)	245, 368
AfiI	CCNNNNNNNGG	2 cut(s)	221, 269
AjiI	CACGTC	1 cut(s)	100
AleI	CACNNNNGTG	1 cut(s)	458
AluBI	AGCT	4 cut(s)	65, 76, 188, 193
AluI	AGCT	4 cut(s)	65, 76, 188, 193
Alw21I	GWGCWC	1 cut(s)	27
Alw44I	GTGCAC	1 cut(s)	23
AoxI	GGCC	2 cut(s)	197, 271
ApaLI	GTGCAC	1 cut(s)	23
ApeKI	GCWGC	1 cut(s)	253
AsuHPI	GGTGA	2 cut(s)	133, 275
BaeGI	GKGCMC	1 cut(s)	27
BalI	TGGCCA	1 cut(s)	273
Bbv12I	GWGCWC	1 cut(s)	27
BbvI	GCAGC	1 cut(s)	265
BccI	CCATC	3 cut(s)	129, 263, 306
BclI	TGATCA	1 cut(s)	304
BfmI	CTRYAG	1 cut(s)	388
BisI	GCNGC	1 cut(s)	254
BlpI	GCTNAGC	1 cut(s)	189
BlsI	GCNGC	1 cut(s)	255
BmcAI	AGTACT	1 cut(s)	245
BmgBI	CACGTC	1 cut(s)	100
BmsI	GCATC	2 cut(s)	6, 265
Bpu1102I	GCTNAGC	1 cut(s)	189
Bsc4I	CCNNNNNNNGG	2 cut(s)	221, 269
Bse1I	ACTGG	1 cut(s)	181
BseGI	GGATG	1 cut(s)	140
BseLI	CCNNNNNNNGG	2 cut(s)	221, 269
BseMII	CTCAG	1 cut(s)	180
BseNI	ACTGG	1 cut(s)	181
BseRI	GAGGAG	2 cut(s)	184, 411
BseSI	GKGCMC	1 cut(s)	27
BseXI	GCAGC	1 cut(s)	265
Bsh1236I	CGCG	1 cut(s)	267
BshFI	GGCC	2 cut(s)	199, 273
BsiHKAI	GWGCWC	1 cut(s)	27
BslI	CCNNNNNNNGG	2 cut(s)	221, 269
BsnI	GGCC	2 cut(s)	199, 273
Bsp1286I	GDGCHC	1 cut(s)	27
Bsp143I	GATC	1 cut(s)	304
Bsp1720I	GCTNAGC	1 cut(s)	189
BspACI	CCGC	1 cut(s)	265
BspANI	GGCC	2 cut(s)	199, 273
BspCNI	CTCAG	1 cut(s)	181
BspFNI	CGCG	1 cut(s)	267
BspHI	TCATGA	1 cut(s)	301
BsrI	ACTGG	1 cut(s)	181
BssMI	GATC	1 cut(s)	304
Bst4CI	ACNGT	3 cut(s)	35, 127, 392
BstDEI	CTNAG	1 cut(s)	189
BstF5I	GGATG	1 cut(s)	140
BstFNI	CGCG	1 cut(s)	267
BstKTI	GATC	1 cut(s)	307
BstMBI	GATC	1 cut(s)	304
BstMWI	GCNNNNNNNGC	2 cut(s)	259, 393
BstNSI	RCATGY	1 cut(s)	115
BstSFI	CTRYAG	1 cut(s)	388
BstSLI	GKGCMC	1 cut(s)	27
BstUI	CGCG	1 cut(s)	267
BstV1I	GCAGC	1 cut(s)	265
BsuRI	GGCC	2 cut(s)	199, 273
BtgZI	GCGATG	1 cut(s)	282
BtrI	CACGTC	1 cut(s)	100
BtsCI	GGATG	1 cut(s)	140
BtsI	GCAGTG	2 cut(s)	171, 453
BtsIMutI	CAGTG	4 cut(s)	171, 397, 453, 472
CciI	TCATGA	1 cut(s)	301
Csp6I	GTAC	2 cut(s)	244, 367
CviAII	CATG	8 cut(s)	28, 112, 130, 302, 383, 404, 436, 482
CviQI	GTAC	2 cut(s)	244, 367
DdeI	CTNAG	1 cut(s)	189
DpnI	GATC	1 cut(s)	306
DpnII	GATC	1 cut(s)	304
DraI	TTTAAA	1 cut(s)	159
EaeI	YGGCCR	1 cut(s)	271
FaeI	CATG	8 cut(s)	31, 115, 133, 305, 386, 407, 439, 485
FatI	CATG	8 cut(s)	27, 111, 129, 301, 382, 403, 435, 481
FauI	CCCGC	1 cut(s)	272
FbaI	TGATCA	1 cut(s)	304
FblI	GTMKAC	1 cut(s)	87
Fnu4HI	GCNGC	1 cut(s)	254
FokI	GGATG	1 cut(s)	147
Fsp4HI	GCNGC	1 cut(s)	254
GluI	GCNGC	1 cut(s)	254
HaeIII	GGCC	2 cut(s)	199, 273
Hin1II	CATG	8 cut(s)	31, 115, 133, 305, 386, 407, 439, 485
HindIII	AAGCTT	1 cut(s)	74
HinfI	GANTC	1 cut(s)	343
HphI	GGTGA	2 cut(s)	133, 275
Hpy166II	GTNNAC	3 cut(s)	25, 88, 317
Hpy188III	TCNNGA	1 cut(s)	302
Hpy8I	GTNNAC	3 cut(s)	25, 88, 317
HpyAV	CCTTC	3 cut(s)	112, 145, 174
HpyCH4III	ACNGT	3 cut(s)	35, 127, 392
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	3 cut(s)	19, 25, 115
HpyF10VI	GCNNNNNNNGC	2 cut(s)	259, 393
HpyF3I	CTNAG	1 cut(s)	189
HpySE526I	ACGT	1 cut(s)	99
Hsp92II	CATG	8 cut(s)	31, 115, 133, 305, 386, 407, 439, 485
Ksp22I	TGATCA	1 cut(s)	304
Kzo9I	GATC	1 cut(s)	304
LmnI	GCTCC	1 cut(s)	400
LpnPI	CCDG	5 cut(s)	24, 162, 228, 263, 434
Lsp1109I	GCAGC	1 cut(s)	265
LweI	GCATC	2 cut(s)	6, 265
MaeII	ACGT	1 cut(s)	99
MaeIII	GTNAC	2 cut(s)	121, 224
MalI	GATC	1 cut(s)	306
MboI	GATC	1 cut(s)	304
MhlI	GDGCHC	1 cut(s)	27
MlsI	TGGCCA	1 cut(s)	273
MluCI	AATT	3 cut(s)	337, 349, 370
MluNI	TGGCCA	1 cut(s)	273
MnlI	CCTC	5 cut(s)	162, 165, 429, 432, 489
Mox20I	TGGCCA	1 cut(s)	273
MscI	TGGCCA	1 cut(s)	273
MseI	TTAA	4 cut(s)	78, 158, 234, 441
MslI	CAYNNNNRTG	2 cut(s)	300, 458
Msp20I	TGGCCA	1 cut(s)	273
MspA1I	CMGCKG	1 cut(s)	188
MvnI	CGCG	1 cut(s)	267
MwoI	GCNNNNNNNGC	2 cut(s)	259, 393
NdeII	GATC	1 cut(s)	304
NlaIII	CATG	8 cut(s)	31, 115, 133, 305, 386, 407, 439, 485
NmuCI	GTSAC	2 cut(s)	121, 224
NspI	RCATGY	1 cut(s)	115
OliI	CACNNNNGTG	1 cut(s)	458
PagI	TCATGA	1 cut(s)	301
PcsI	WCGNNNNNNNCGW	2 cut(s)	96, 362
PfeI	GAWTC	1 cut(s)	343
PkrI	GCNGC	1 cut(s)	255
PvuII	CAGCTG	1 cut(s)	188
RsaI	GTAC	2 cut(s)	245, 368
RsaNI	GTAC	2 cut(s)	244, 367
RseI	CAYNNNNRTG	2 cut(s)	300, 458
SaqAI	TTAA	4 cut(s)	78, 158, 234, 441
SatI	GCNGC	1 cut(s)	254
Sau3AI	GATC	1 cut(s)	304
ScaI	AGTACT	1 cut(s)	245
SduI	GDGCHC	1 cut(s)	27
SetI	ASST	9 cut(s)	67, 78, 102, 123, 156, 190, 195, 234, 335
SfaNI	GCATC	2 cut(s)	6, 265
SfcI	CTRYAG	1 cut(s)	388
SmiMI	CAYNNNNRTG	2 cut(s)	300, 458
Sse9I	AATT	3 cut(s)	337, 349, 370
SsiI	CCGC	1 cut(s)	265
TaaI	ACNGT	3 cut(s)	35, 127, 392
TaiI	ACGT	1 cut(s)	102
TaqI	TCGA	1 cut(s)	341
TasI	AATT	3 cut(s)	337, 349, 370
TatI	WGTACW	1 cut(s)	243
TfiI	GAWTC	1 cut(s)	343
Tru1I	TTAA	4 cut(s)	78, 158, 234, 441
Tru9I	TTAA	4 cut(s)	78, 158, 234, 441
TscAI	CASTG	4 cut(s)	171, 397, 460, 472
TseFI	GTSAC	2 cut(s)	121, 224
TseI	GCWGC	1 cut(s)	253
Tsp45I	GTSAC	2 cut(s)	121, 224
TspDTI	ATGAA	1 cut(s)	486
TspRI	CASTG	4 cut(s)	171, 397, 460, 472
VneI	GTGCAC	1 cut(s)	23
XceI	RCATGY	1 cut(s)	115
XmiI	GTMKAC	1 cut(s)	87
ZrmI	AGTACT	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.