Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001483

Physical Location & Seq

Genomic Coordinates Forward (+)

29887616 .. 29890211

Gene Structure 2596 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G79450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGAGTTCCACCGCGGCATCTTCCACCGTCGGAGGAGGCGGATCGTCTGAGATTTCCGGTGTCAAAAAAACCTCCAAGCGACCAAAATATTCTAGGTTTACTCAGCAAGAGCTTCCAGCGTGCAAGCCAATTCTTACTCCAAGATGGGTGATCTTGACATTTCTTGTCGCTGGGGTTGTCTTCATTCCCCTTGGAGTGATCTGCTTATTTGCTTCTCAGGGAGTAGTCGAGATTGTTGATCGATATGACACAGACTGTATTCCAACATCTTCTAGAAACAACATGGTCGCTTACATACAGGGTGAAGGAGATAAGATCTGTAAGAGAACAATAACGGTGACAAAAGCTATGAAGCATCCTGTCTATGTATACTACCAACTTGAGAATTTCTACCAAAACCATAGACGGTATGTGAAAAGTCGAAACGATGCACAACTAAGAAGTCCAAAAGAAGAGCATGATGTGAAGACCTGTGCACCTGAGGATAATGTGGGTGGAGAACCAATTGTGCCATGTGGTCTTGTTGCTTGGAGTTTGTTCAACGATACTTATAGCTTTTCAAGAAATAGCCAACAACTTCTTGTGAATAAGAAAGGTATCTCATGGAAGAGTGACAGAGAAAACAAGTTTGGGAAAAATGTCTTCCCTAAAAATTTTCAGAAAGGAGCACCAATAGGCGGTGGAACTCTTAATATTTCTAAACCGTTGAGTGAGCAAGAAGACCTCATAGTCTGGATGCGAACCGCGGCTTTGCCAACGTTTAGGAAGCTGTATGGGAAGATTGAGACAGACCTACACGCGGGTGATACCATAACGGTCTTGTTGCAGAACAACTACAACACTTACAGCTTCAATGGGCAGAAGAAGCTAGTGCTGTCAACAACTAGCTGGCTCGGCGGAAGGAATGATTTCCTCGGGATTGCTTATCTGACTGTAGGCAGTATTTGCTTGTTCTTGGCTGTTACATTTGCCGTATTGTATCTAGTTAAGCCAAGGCAACTCGGAGACCCCTCGTACCTTTCGTGGAACAGAAGTGCTGGAGGTTTACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0005789 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0008150 GO:0010008 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0031090 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0033036 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0071702 GO:0071944 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDC50

Protein Analysis

350

Amino Acids

38.91

Weight (kDa)

9.45

Isoelectric Point (pI)

44.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDC50	PF03381	69 - 333	1.6e-90	LEM3 (ligand-effect modulator 3) family / CDC50 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001483)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16360 AT1G16360 AT1G16360 AT1G16360 AT1G16360 AT1G54320 AT1G79450 AT1G79450 AT3G12740
fragaria_vesca	FvH4_1g27280 FvH4_1g27280 FvH4_1g27280 FvH4_1g27280 FvH4_1g27280 FvH4_1g27280 FvH4_3g14090
malus_domestica	MD05G1238200.v1.1 MD09G1280100.v1.1 MD10G1216500.v1.1 MD17G1286800.v1.1
prunus_persica	Prupe.3G014200_v2.0.a1 Prupe.3G014200_v2.0.a1 Prupe.3G014200_v2.0.a1 Prupe.4G128200_v2.0.a1 Prupe.4G128200_v2.0.a1
pyrus_communis	pycom05g21420 pycom09g18820 pycom17g27020
rosa_chinensis	RchiOBHm_Chr3g0488711 RchiOBHm_Chr5g0023401
rosa_laevigata	RLG00000022929 RLG00000032719
rosa_multiflora	Rmu_sc0000265.1_g000021 Rmu_sc0004629.1_g000005 Rmu_sc0006389.1_g000001
rosa_roxburghii	Rroxscaffold_1G00055650 Rroxscaffold_1G00055940
rosa_rugosa	Rorug03G0240900 Rorug05G0078900
rosa_samantha	Rh3AG289200 Rh3BG326000 Rh3CG323700 Rh3DG322000 Rh5AG165800 Rh5BG165000 Rh5CG179900 Rh5DG166500
rosa_wichuraiana	Rw0G013700 Rw3G025600 Rw5G014920 Rw5G015080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	728
AccI	GTMKAC	1 cut(s)	369
AccII	CGCG	3 cut(s)	14, 746, 800
AciI	CCGC	8 cut(s)	12, 14, 39, 678, 744, 746, 800, 897
AclI	AACGTT	1 cut(s)	758
AclWI	GGATC	1 cut(s)	49
AcsI	RAATTY	2 cut(s)	385, 652
AfaI	GTAC	1 cut(s)	1016
AfiI	CCNNNNNNNGG	2 cut(s)	677, 799
AgsI	TTSAA	3 cut(s)	541, 561, 853
AjuI	GAANNNNNNNTTGG	2 cut(s)	612, 644
AleI	CACNNNNGTG	1 cut(s)	801
AluBI	AGCT	7 cut(s)	112, 347, 555, 769, 849, 868, 888
AluI	AGCT	7 cut(s)	112, 347, 555, 769, 849, 868, 888
Alw21I	GWGCWC	2 cut(s)	478, 670
Alw26I	GTCTC	2 cut(s)	779, 999
Alw44I	GTGCAC	1 cut(s)	474
AlwI	GGATC	1 cut(s)	49
Ama87I	CYCGRG	1 cut(s)	914
ApaLI	GTGCAC	1 cut(s)	474
ApoI	RAATTY	2 cut(s)	385, 652
Asp700I	GAANNNNTTC	1 cut(s)	908
AsuHPI	GGTGA	4 cut(s)	160, 314, 349, 815
AvaI	CYCGRG	1 cut(s)	914
AxyI	CCTNAGG	1 cut(s)	480
BaeGI	GKGCMC	1 cut(s)	478
BbsI	GAAGAC	4 cut(s)	172, 473, 634, 726
Bbv12I	GWGCWC	2 cut(s)	478, 670
BccI	CCATC	1 cut(s)	138
BceAI	ACGGC	1 cut(s)	956
BcoDI	GTCTC	2 cut(s)	779, 999
BfaI	CTAG	5 cut(s)	93, 273, 869, 885, 983
BfmI	CTRYAG	1 cut(s)	933
BglII	AGATCT	1 cut(s)	315
BisI	GCNGC	2 cut(s)	15, 747
BlsI	GCNGC	2 cut(s)	16, 748
BmeT110I	CYCGRG	1 cut(s)	914
BmsI	GCATC	4 cut(s)	26, 364, 418, 726
BpiI	GAAGAC	4 cut(s)	172, 473, 634, 726
BpuEI	CTTGAG	1 cut(s)	401
Bsa29I	ATCGAT	1 cut(s)	241
BsaI	GGTCTC	1 cut(s)	999
BsaJI	CCNNGG	5 cut(s)	12, 190, 744, 913, 992
BsaWI	WCCGGW	1 cut(s)	56
Bsc4I	CCNNNNNNNGG	2 cut(s)	677, 799
Bse21I	CCTNAGG	1 cut(s)	480
BseCI	ATCGAT	1 cut(s)	241
BseDI	CCNNGG	5 cut(s)	12, 190, 744, 913, 992
BseGI	GGATG	2 cut(s)	355, 741
BseLI	CCNNNNNNNGG	2 cut(s)	677, 799
BseMII	CTCAG	4 cut(s)	39, 116, 230, 471
BseRI	GAGGAG	1 cut(s)	48
BseSI	GKGCMC	1 cut(s)	478
BseYI	CCCAGC	1 cut(s)	170
Bsh1236I	CGCG	3 cut(s)	14, 746, 800
BshVI	ATCGAT	1 cut(s)	241
BsiHKAI	GWGCWC	2 cut(s)	478, 670
BsiHKCI	CYCGRG	1 cut(s)	914
BsiSI	CCGG	1 cut(s)	57
BslI	CCNNNNNNNGG	2 cut(s)	677, 799
BsmAI	GTCTC	2 cut(s)	779, 999
Bso31I	GGTCTC	1 cut(s)	999
BsoBI	CYCGRG	1 cut(s)	914
Bsp1286I	GDGCHC	2 cut(s)	478, 670
Bsp143I	GATC	5 cut(s)	41, 150, 198, 238, 315
BspACI	CCGC	8 cut(s)	12, 14, 39, 678, 744, 746, 800, 897
BspCNI	CTCAG	4 cut(s)	40, 115, 229, 472
BspDI	ATCGAT	1 cut(s)	241
BspFNI	CGCG	3 cut(s)	14, 746, 800
BspPI	GGATC	1 cut(s)	49
BspQI	GCTCTTC	1 cut(s)	447
BspTNI	GGTCTC	1 cut(s)	999
BssECI	CCNNGG	5 cut(s)	12, 190, 744, 913, 992
BssMI	GATC	5 cut(s)	41, 150, 198, 238, 315
BssNAI	GTATAC	1 cut(s)	370
BssT1I	CCWWGG	2 cut(s)	190, 992
Bst1107I	GTATAC	1 cut(s)	370
Bst4CI	ACNGT	8 cut(s)	28, 257, 337, 408, 705, 817, 934, 1050
Bst6I	CTCTTC	2 cut(s)	447, 602
BstAPI	GCANNNNNTGC	1 cut(s)	945
BstC8I	GCNNGC	3 cut(s)	121, 125, 890
BstDEI	CTNAG	5 cut(s)	48, 102, 216, 437, 480
BstDSI	CCRYGG	2 cut(s)	12, 744
BstF5I	GGATG	2 cut(s)	355, 741
BstFNI	CGCG	3 cut(s)	14, 746, 800
BstKTI	GATC	5 cut(s)	44, 153, 201, 241, 318
BstMAI	GTCTC	2 cut(s)	779, 999
BstMBI	GATC	5 cut(s)	41, 150, 198, 238, 315
BstMWI	GCNNNNNNNGC	3 cut(s)	865, 894, 945
BstSFI	CTRYAG	1 cut(s)	933
BstSLI	GKGCMC	1 cut(s)	478
BstUI	CGCG	3 cut(s)	14, 746, 800
BstV2I	GAAGAC	4 cut(s)	172, 473, 634, 726
BstX2I	RGATCY	1 cut(s)	315
BstYI	RGATCY	1 cut(s)	315
BstZ17I	GTATAC	1 cut(s)	370
Bsu15I	ATCGAT	1 cut(s)	241
Bsu36I	CCTNAGG	1 cut(s)	480
BsuTUI	ATCGAT	1 cut(s)	241
BtgI	CCRYGG	2 cut(s)	12, 744
BtsCI	GGATG	2 cut(s)	355, 741
Cac8I	GCNNGC	3 cut(s)	121, 125, 890
Cfr42I	CCGCGG	2 cut(s)	15, 747
ClaI	ATCGAT	1 cut(s)	241
Csp6I	GTAC	1 cut(s)	1015
CviAII	CATG	4 cut(s)	283, 458, 513, 603
CviQI	GTAC	1 cut(s)	1015
DdeI	CTNAG	5 cut(s)	48, 102, 216, 437, 480
DpnI	GATC	5 cut(s)	43, 152, 200, 240, 317
DpnII	GATC	5 cut(s)	41, 150, 198, 238, 315
DrdI	GACNNNNNNGTC	1 cut(s)	728
DseDI	GACNNNNNNGTC	1 cut(s)	728
Eam1104I	CTCTTC	2 cut(s)	447, 602
EarI	CTCTTC	2 cut(s)	447, 602
EciI	GGCGGA	2 cut(s)	54, 912
Eco130I	CCWWGG	2 cut(s)	190, 992
Eco31I	GGTCTC	1 cut(s)	999
Eco81I	CCTNAGG	1 cut(s)	480
Eco88I	CYCGRG	1 cut(s)	914
EcoT14I	CCWWGG	2 cut(s)	190, 992
ErhI	CCWWGG	2 cut(s)	190, 992
FaeI	CATG	4 cut(s)	286, 461, 516, 606
FatI	CATG	4 cut(s)	282, 457, 512, 602
FauI	CCCGC	1 cut(s)	793
FblI	GTMKAC	1 cut(s)	369
Fnu4HI	GCNGC	2 cut(s)	15, 747
FokI	GGATG	2 cut(s)	342, 748
Fsp4HI	GCNGC	2 cut(s)	15, 747
FspBI	CTAG	5 cut(s)	93, 273, 869, 885, 983
GluI	GCNGC	2 cut(s)	15, 747
GsaI	CCCAGC	1 cut(s)	174
HapII	CCGG	1 cut(s)	57
Hin1II	CATG	4 cut(s)	286, 461, 516, 606
HincII	GTYRAC	1 cut(s)	879
HindII	GTYRAC	1 cut(s)	879
HpaII	CCGG	1 cut(s)	57
HphI	GGTGA	4 cut(s)	160, 314, 349, 815
Hpy166II	GTNNAC	5 cut(s)	99, 370, 476, 879, 1046
Hpy188I	TCNGA	5 cut(s)	32, 49, 660, 930, 1004
Hpy188III	TCNNGA	6 cut(s)	154, 229, 273, 561, 733, 916
Hpy8I	GTNNAC	5 cut(s)	99, 370, 476, 879, 1046
Hpy99I	CGWCG	1 cut(s)	32
HpyAV	CCTTC	2 cut(s)	299, 894
HpyCH4III	ACNGT	8 cut(s)	28, 257, 337, 408, 705, 817, 934, 1050
HpyCH4IV	ACGT	1 cut(s)	758
HpyCH4V	TGCA	4 cut(s)	123, 431, 476, 826
HpyF10VI	GCNNNNNNNGC	3 cut(s)	865, 894, 945
HpyF3I	CTNAG	5 cut(s)	48, 102, 216, 437, 480
HpySE526I	ACGT	1 cut(s)	758
Hsp92II	CATG	4 cut(s)	286, 461, 516, 606
KspI	CCGCGG	2 cut(s)	15, 747
Kzo9I	GATC	5 cut(s)	41, 150, 198, 238, 315
LguI	GCTCTTC	1 cut(s)	447
LmnI	GCTCC	1 cut(s)	665
LweI	GCATC	4 cut(s)	26, 364, 418, 726
MaeI	CTAG	5 cut(s)	93, 273, 869, 885, 983
MaeII	ACGT	1 cut(s)	758
MaeIII	GTNAC	3 cut(s)	337, 611, 961
MalI	GATC	5 cut(s)	43, 152, 200, 240, 317
MboI	GATC	5 cut(s)	41, 150, 198, 238, 315
MfeI	CAATTG	1 cut(s)	504
MflI	RGATCY	1 cut(s)	315
MhlI	GDGCHC	2 cut(s)	478, 670
MluCI	AATT	4 cut(s)	129, 385, 504, 652
MmeI	TCCRAC	2 cut(s)	10, 287
MnlI	CCTC	8 cut(s)	26, 29, 82, 475, 734, 923, 1021, 1034
MroXI	GAANNNNTTC	1 cut(s)	908
MseI	TTAA	2 cut(s)	690, 987
MslI	CAYNNNNRTG	1 cut(s)	801
MspA1I	CMGCKG	2 cut(s)	14, 746
MspI	CCGG	1 cut(s)	57
MunI	CAATTG	1 cut(s)	504
MvnI	CGCG	3 cut(s)	14, 746, 800
MwoI	GCNNNNNNNGC	3 cut(s)	865, 894, 945
NdeII	GATC	5 cut(s)	41, 150, 198, 238, 315
NlaIII	CATG	4 cut(s)	286, 461, 516, 606
NmeAIII	GCCGAG	1 cut(s)	873
NmuCI	GTSAC	2 cut(s)	337, 611
OliI	CACNNNNGTG	1 cut(s)	801
PciSI	GCTCTTC	1 cut(s)	447
PcsI	WCGNNNNNNNCGW	1 cut(s)	1019
PdmI	GAANNNNTTC	1 cut(s)	908
PkrI	GCNGC	2 cut(s)	16, 748
Psp1406I	AACGTT	1 cut(s)	758
PspFI	CCCAGC	1 cut(s)	170
PsuI	RGATCY	1 cut(s)	315
RsaI	GTAC	1 cut(s)	1016
RsaNI	GTAC	1 cut(s)	1015
RseI	CAYNNNNRTG	1 cut(s)	801
SacII	CCGCGG	2 cut(s)	15, 747
SapI	GCTCTTC	1 cut(s)	447
SaqAI	TTAA	2 cut(s)	690, 987
SatI	GCNGC	2 cut(s)	15, 747
Sau3AI	GATC	5 cut(s)	41, 150, 198, 238, 315
SduI	GDGCHC	2 cut(s)	478, 670
SfaNI	GCATC	4 cut(s)	26, 364, 418, 726
SfcI	CTRYAG	1 cut(s)	933
Sfr303I	CCGCGG	2 cut(s)	15, 747
SgrBI	CCGCGG	2 cut(s)	15, 747
SmiMI	CAYNNNNRTG	1 cut(s)	801
SmlI	CTYRAG	1 cut(s)	380
SmoI	CTYRAG	1 cut(s)	380
Sse9I	AATT	4 cut(s)	129, 385, 504, 652
SsiI	CCGC	8 cut(s)	12, 14, 39, 678, 744, 746, 800, 897
SspI	AATATT	2 cut(s)	89, 694
SspMI	CTAG	5 cut(s)	93, 273, 869, 885, 983
StyI	CCWWGG	2 cut(s)	190, 992
TaaI	ACNGT	8 cut(s)	28, 257, 337, 408, 705, 817, 934, 1050
TaiI	ACGT	1 cut(s)	761
TaqI	TCGA	3 cut(s)	228, 241, 421
TasI	AATT	4 cut(s)	129, 385, 504, 652
TauI	GCSGC	2 cut(s)	17, 749
Tru1I	TTAA	2 cut(s)	690, 987
Tru9I	TTAA	2 cut(s)	690, 987
TseFI	GTSAC	2 cut(s)	337, 611
Tsp45I	GTSAC	2 cut(s)	337, 611
TspDTI	ATGAA	2 cut(s)	172, 365
VneI	GTGCAC	1 cut(s)	474
XapI	RAATTY	2 cut(s)	385, 652
XbaI	TCTAGA	1 cut(s)	272
XmiI	GTMKAC	1 cut(s)	369
XmnI	GAANNNNTTC	1 cut(s)	908
XspI	CTAG	5 cut(s)	93, 273, 869, 885, 983

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.