FvH4_3g14090

ALA-interacting subunit 3-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
8464371 .. 8468855
4485 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g14090.t1

Sequence Viewer

Length: 1047 bp
ATGAGTTCCAATACGGCGCCGTCTAGCTCAGCAGCCGCTGGATCTGCCGATTCAGCTGCTACCCGGAGGTCCAAGCGCCCCAAATATTCAAGATTTACTCAGCAGGAACTTCCAGCATGCAAGCCAATTCTCACGCCAAAATGGGTAATTTCAGCATTCATGCTTGTTGCAATCGTCTTCATTCCCATCGGAGTTGCTACCCTATTTGCCTCCCGAGATGTTGTTGAAATTGTTGATCGTTATGAAACCGATTGTATACCAGCGTCATCTAGAAGTGATAAGGTCAAATACATCCAGACCGAGGGAGATAAATCATGCAACAGAACTCTGACGGTACCAAAACACATGAAGCAGCCTATATATGTATATTATCAGCTTGATAATTTCTATCAGAATCATCGCAGGTATGTTAAGAGCCGAAGTGATAAACAGTTGAAAGATCCAAAGTCTGAAAGTGTAGTGGATGATTGTAAGCCTGAAGACAAAAATGGTGTACCCATTGTACCATGTGGGCTCATAGCTTGGAGTTTGTTCAATGACACCTATACTTTTTCCCGCAACCAAAGCGAGCCATTATCGGTGAATAAGAAGGGCATTGCATGGAAGAGTGACAGGGAGCACAAATTTGGCAAAAATGTCTTTCCTAAGAACTTTCAGAATTCAACTCTTAAAGGAGGTGCAACTCTCAATGCATCCATTCCATTGAGTGAGCAGGAGGACCTTATTGTTTGGATGAGAACTGCTGCGTTGCCAACATTCAGAAAATTATATGGGAAGATAGAGGTGGATCTTCAGCAAAATGATGTCATACATGTGTCATTGGAGAACAATTACAACACATACAGTTTCAATGGAAAAAAGAAGCTTGTACTTTCGACCACTAGTTGGATTGGTGGCAGGAATGACTTCCTTGGCATTGCTTATCTCACTGTCGGCGGGTTGTGCTTCTTTCTGGCCATGGCTTTCACAATTGTATATCTTGTTAAACCAAGGCAACTTGGAGATCCTTCGTATTTGTCGTGGAACAGAAATCCAGGAGGGCACTAA

Protein Analysis

349

Amino Acids

39.15

Weight (kDa)

9.45

Isoelectric Point (pI)

40.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CDC50 PF03381 68 - 332 7e-94 LEM3 (ligand-effect modulator 3) family / CDC50 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 393
Acc65I GGTACC 1 cut(s) 334
AccB1I GGYRCC 2 cut(s) 16, 334
AccB7I CCANNNNNTGG 1 cut(s) 885
AccI GTMKAC 1 cut(s) 256
AciI CCGC 3 cut(s) 36, 556, 936
AclWI GGATC 4 cut(s) 49, 434, 795, 998
AcoI YGGCCR 1 cut(s) 954
AcsI RAATTY 2 cut(s) 623, 658
AcuI CTGAAG 2 cut(s) 498, 776
AcyI GRCGYC 1 cut(s) 17
AfaI GTAC 4 cut(s) 336, 495, 504, 870
AfiI CCNNNNNNNGG 2 cut(s) 301, 885
AflIII ACRYGT 1 cut(s) 811
AgsI TTSAA 6 cut(s) 90, 227, 436, 535, 663, 850
AhlI ACTAGT 1 cut(s) 881
AjnI CCWGG 1 cut(s) 1033
AluBI AGCT 5 cut(s) 27, 56, 376, 521, 865
AluI AGCT 5 cut(s) 27, 56, 376, 521, 865
Alw21I GWGCWC 1 cut(s) 621
AlwI GGATC 4 cut(s) 49, 434, 795, 998
AlwNI CAGNNNCTG 1 cut(s) 38
Ama87I CYCGRG 1 cut(s) 213
AoxI GGCC 1 cut(s) 954
ApeKI GCWGC 4 cut(s) 32, 56, 352, 743
ApoI RAATTY 2 cut(s) 623, 658
Asp700I GAANNNNTTC 1 cut(s) 905
Asp718I GGTACC 1 cut(s) 334
AspLEI GCGC 2 cut(s) 19, 78
AspS9I GGNCC 2 cut(s) 69, 718
AsuC2I CCSGG 1 cut(s) 64
AsuHPI GGTGA 1 cut(s) 592
AvaI CYCGRG 1 cut(s) 213
AvaII GGWCC 2 cut(s) 69, 718
BaeGI GKGCMC 1 cut(s) 1044
BalI TGGCCA 1 cut(s) 956
BanI GGYRCC 2 cut(s) 16, 334
BanII GRGCYC 1 cut(s) 516
BbsI GAAGAC 2 cut(s) 169, 486
Bbv12I GWGCWC 1 cut(s) 621
BbvI GCAGC 4 cut(s) 43, 44, 364, 730
BccI CCATC 1 cut(s) 194
BceAI ACGGC 2 cut(s) 4, 30
BcgI CGANNNNNNTGC 2 cut(s) 38, 72
BciT130I CCWGG 1 cut(s) 1035
BcnI CCSGG 1 cut(s) 64
BcuI ACTAGT 1 cut(s) 881
BfaI CTAG 3 cut(s) 24, 270, 882
BfoI RGCGCY 2 cut(s) 20, 79
BfuAI ACCTGC 1 cut(s) 393
BisI GCNGC 5 cut(s) 33, 36, 57, 353, 744
BlpI GCTNAGC 1 cut(s) 28
BlsI GCNGC 5 cut(s) 34, 37, 58, 354, 745
Bme1390I CCNGG 2 cut(s) 64, 1035
Bme18I GGWCC 2 cut(s) 69, 718
BmeT110I CYCGRG 1 cut(s) 213
BmgT120I GGNCC 2 cut(s) 69, 718
BmiI GGNNCC 2 cut(s) 18, 336
BmrFI CCNGG 2 cut(s) 64, 1035
BmsI GCATC 1 cut(s) 701
BpiI GAAGAC 2 cut(s) 169, 486
Bpu1102I GCTNAGC 1 cut(s) 28
BpuMI CCSGG 1 cut(s) 64
BsaHI GRCGYC 1 cut(s) 17
BsaJI CCNNGG 4 cut(s) 300, 910, 957, 989
Bsc4I CCNNNNNNNGG 2 cut(s) 301, 885
Bse3DI GCAATG 2 cut(s) 594, 915
BseBI CCWGG 1 cut(s) 1035
BseDI CCNNGG 4 cut(s) 300, 910, 957, 989
BseGI GGATG 4 cut(s) 291, 469, 692, 738
BseLI CCNNNNNNNGG 2 cut(s) 301, 885
BseMI GCAATG 2 cut(s) 594, 915
BseMII CTCAG 2 cut(s) 42, 113
BseSI GKGCMC 1 cut(s) 1044
BseXI GCAGC 4 cut(s) 43, 44, 364, 730
BshFI GGCC 1 cut(s) 956
BshNI GGYRCC 2 cut(s) 16, 334
BsiHKAI GWGCWC 1 cut(s) 621
BsiHKCI CYCGRG 1 cut(s) 213
BsiSI CCGG 1 cut(s) 64
BslI CCNNNNNNNGG 2 cut(s) 301, 885
BsmI GAATGC 1 cut(s) 155
BsnI GGCC 1 cut(s) 956
BsoBI CYCGRG 1 cut(s) 213
Bsp1286I GDGCHC 3 cut(s) 516, 621, 1044
Bsp143I GATC 5 cut(s) 41, 235, 439, 787, 1003
Bsp1720I GCTNAGC 1 cut(s) 28
Bsp19I CCATGG 1 cut(s) 957
BspACI CCGC 3 cut(s) 36, 556, 936
BspANI GGCC 1 cut(s) 956
BspCNI CTCAG 2 cut(s) 41, 112
BspLI GGNNCC 2 cut(s) 18, 336
BspMI ACCTGC 1 cut(s) 393
BspPI GGATC 4 cut(s) 49, 434, 795, 998
BspT107I GGYRCC 2 cut(s) 16, 334
BsrDI GCAATG 2 cut(s) 594, 915
BssECI CCNNGG 4 cut(s) 300, 910, 957, 989
BssMI GATC 5 cut(s) 41, 235, 439, 787, 1003
BssNAI GTATAC 1 cut(s) 257
BssNI GRCGYC 1 cut(s) 17
BssT1I CCWWGG 3 cut(s) 910, 957, 989
Bst1107I GTATAC 1 cut(s) 257
Bst2UI CCWGG 1 cut(s) 1035
Bst4CI ACNGT 4 cut(s) 334, 432, 845, 931
Bst6I CTCTTC 1 cut(s) 599
BstACI GRCGYC 1 cut(s) 17
BstC8I GCNNGC 3 cut(s) 118, 122, 569
BstDEI CTNAG 3 cut(s) 28, 99, 645
BstDSI CCRYGG 1 cut(s) 957
BstF5I GGATG 4 cut(s) 291, 469, 692, 738
BstH2I RGCGCY 2 cut(s) 20, 79
BstHHI GCGC 2 cut(s) 19, 78
BstKTI GATC 5 cut(s) 44, 238, 442, 790, 1006
BstMBI GATC 5 cut(s) 41, 235, 439, 787, 1003
BstMWI GCNNNNNNNGC 4 cut(s) 44, 53, 564, 942
BstNI CCWGG 1 cut(s) 1035
BstNSI RCATGY 2 cut(s) 120, 815
BstSCI CCNGG 2 cut(s) 62, 1033
BstSLI GKGCMC 1 cut(s) 1044
BstV1I GCAGC 4 cut(s) 43, 44, 364, 730
BstV2I GAAGAC 2 cut(s) 169, 486
BstX2I RGATCY 4 cut(s) 41, 439, 787, 1003
BstYI RGATCY 4 cut(s) 41, 439, 787, 1003
BstZ17I GTATAC 1 cut(s) 257
BsuRI GGCC 1 cut(s) 956
BtgI CCRYGG 1 cut(s) 957
BtgZI GCGATG 1 cut(s) 383
BtsCI GGATG 4 cut(s) 291, 469, 692, 738
BtsIMutI CAGTG 1 cut(s) 927
BveI ACCTGC 1 cut(s) 393
Cac8I GCNNGC 3 cut(s) 118, 122, 569
CaiI CAGNNNCTG 1 cut(s) 38
CfoI GCGC 2 cut(s) 19, 78
Cfr13I GGNCC 2 cut(s) 69, 718
CseI GACGC 1 cut(s) 252
Csp6I GTAC 4 cut(s) 335, 494, 503, 869
CviAII CATG 8 cut(s) 117, 160, 315, 346, 507, 600, 812, 958
CviQI GTAC 4 cut(s) 335, 494, 503, 869
DdeI CTNAG 3 cut(s) 28, 99, 645
DinI GGCGCC 1 cut(s) 18
DpnI GATC 5 cut(s) 43, 237, 441, 789, 1005
DpnII GATC 5 cut(s) 41, 235, 439, 787, 1003
EaeI YGGCCR 1 cut(s) 954
Eam1104I CTCTTC 1 cut(s) 599
EarI CTCTTC 1 cut(s) 599
Eco130I CCWWGG 3 cut(s) 910, 957, 989
Eco24I GRGCYC 1 cut(s) 516
Eco47I GGWCC 2 cut(s) 69, 718
Eco57I CTGAAG 2 cut(s) 498, 776
Eco88I CYCGRG 1 cut(s) 213
EcoO109I RGGNCCY 1 cut(s) 718
EcoRI GAATTC 1 cut(s) 658
EcoRII CCWGG 1 cut(s) 1033
EcoT14I CCWWGG 3 cut(s) 910, 957, 989
EcoT22I ATGCAT 1 cut(s) 694
EcoT38I GRGCYC 1 cut(s) 516
EgeI GGCGCC 1 cut(s) 18
EheI GGCGCC 1 cut(s) 18
ErhI CCWWGG 3 cut(s) 910, 957, 989
FaeI CATG 8 cut(s) 120, 163, 318, 349, 510, 603, 815, 961
FatI CATG 8 cut(s) 116, 159, 314, 345, 506, 599, 811, 957
FauI CCCGC 2 cut(s) 563, 929
FblI GTMKAC 1 cut(s) 256
Fnu4HI GCNGC 5 cut(s) 33, 36, 57, 353, 744
FokI GGATG 4 cut(s) 278, 476, 679, 745
FriOI GRGCYC 1 cut(s) 516
Fsp4HI GCNGC 5 cut(s) 33, 36, 57, 353, 744
FspBI CTAG 3 cut(s) 24, 270, 882
GlaI GCGC 2 cut(s) 18, 77
GluI GCNGC 5 cut(s) 33, 36, 57, 353, 744
HaeII RGCGCY 2 cut(s) 20, 79
HaeIII GGCC 1 cut(s) 956
HapII CCGG 1 cut(s) 64
HgaI GACGC 1 cut(s) 252
HhaI GCGC 2 cut(s) 19, 78
Hin1I GRCGYC 1 cut(s) 17
Hin1II CATG 8 cut(s) 120, 163, 318, 349, 510, 603, 815, 961
Hin6I GCGC 2 cut(s) 17, 76
HinP1I GCGC 2 cut(s) 17, 76
HindIII AAGCTT 1 cut(s) 863
HinfI GANTC 2 cut(s) 50, 394
HpaII CCGG 1 cut(s) 64
HphI GGTGA 1 cut(s) 592
Hpy166II GTNNAC 2 cut(s) 257, 494
Hpy188I TCNGA 6 cut(s) 191, 330, 393, 451, 657, 761
Hpy188III TCNNGA 4 cut(s) 90, 213, 270, 295
Hpy8I GTNNAC 2 cut(s) 257, 494
HpyAV CCTTC 2 cut(s) 583, 1017
HpyCH4III ACNGT 4 cut(s) 334, 432, 845, 931
HpyCH4V TGCA 6 cut(s) 120, 170, 318, 599, 680, 692
HpyF10VI GCNNNNNNNGC 4 cut(s) 44, 53, 564, 942
HpyF3I CTNAG 3 cut(s) 28, 99, 645
Hsp92I GRCGYC 1 cut(s) 17
Hsp92II CATG 8 cut(s) 120, 163, 318, 349, 510, 603, 815, 961
HspAI GCGC 2 cut(s) 17, 76
KasI GGCGCC 1 cut(s) 16
KpnI GGTACC 1 cut(s) 338
Kzo9I GATC 5 cut(s) 41, 235, 439, 787, 1003
LmnI GCTCC 1 cut(s) 616
Lsp1109I GCAGC 4 cut(s) 43, 44, 364, 730
LweI GCATC 1 cut(s) 701
MaeI CTAG 3 cut(s) 24, 270, 882
MaeIII GTNAC 1 cut(s) 608
MalI GATC 5 cut(s) 43, 237, 441, 789, 1005
MboI GATC 5 cut(s) 41, 235, 439, 787, 1003
MboII GAAGA 5 cut(s) 169, 491, 616, 782, 787
MfeI CAATTG 1 cut(s) 969
MflI RGATCY 4 cut(s) 41, 439, 787, 1003
MhlI GDGCHC 3 cut(s) 516, 621, 1044
MlsI TGGCCA 1 cut(s) 956
MluCI AATT 9 cut(s) 126, 147, 228, 382, 623, 658, 764, 829, 969
MluNI TGGCCA 1 cut(s) 956
Mly113I GGCGCC 1 cut(s) 17
MmeI TCCRAC 1 cut(s) 866
MnlI CCTC 7 cut(s) 60, 220, 295, 668, 709, 775, 1031
Mox20I TGGCCA 1 cut(s) 956
Mph1103I ATGCAT 1 cut(s) 694
MroXI GAANNNNTTC 1 cut(s) 905
MscI TGGCCA 1 cut(s) 956
MseI TTAA 3 cut(s) 411, 669, 984
MslI CAYNNNNRTG 1 cut(s) 812
Msp20I TGGCCA 1 cut(s) 956
MspA1I CMGCKG 2 cut(s) 38, 56
MspI CCGG 1 cut(s) 64
MspR9I CCNGG 2 cut(s) 64, 1035
MunI CAATTG 1 cut(s) 969
Mva1269I GAATGC 1 cut(s) 155
MvaI CCWGG 1 cut(s) 1035
MwoI GCNNNNNNNGC 4 cut(s) 44, 53, 564, 942
NarI GGCGCC 1 cut(s) 17
NciI CCSGG 1 cut(s) 64
NcoI CCATGG 1 cut(s) 957
NdeII GATC 5 cut(s) 41, 235, 439, 787, 1003
NlaIII CATG 8 cut(s) 120, 163, 318, 349, 510, 603, 815, 961
NlaIV GGNNCC 2 cut(s) 18, 336
NmuCI GTSAC 1 cut(s) 608
NsiI ATGCAT 1 cut(s) 694
NspI RCATGY 2 cut(s) 120, 815
PaeI GCATGC 1 cut(s) 120
PciI ACATGT 1 cut(s) 811
PcsI WCGNNNNNNNCGW 1 cut(s) 1016
PctI GAATGC 1 cut(s) 155
PdmI GAANNNNTTC 1 cut(s) 905
PfeI GAWTC 2 cut(s) 50, 394
PflMI CCANNNNNTGG 1 cut(s) 885
PfoI TCCNGGA 1 cut(s) 1033
PkrI GCNGC 5 cut(s) 34, 37, 58, 354, 745
PluTI GGCGCC 1 cut(s) 20
PpuMI RGGWCCY 1 cut(s) 718
PscI ACATGT 1 cut(s) 811
Psp5II RGGWCCY 1 cut(s) 718
Psp6I CCWGG 1 cut(s) 1033
PspGI CCWGG 1 cut(s) 1033
PspN4I GGNNCC 2 cut(s) 18, 336
PspPI GGNCC 2 cut(s) 69, 718
PspPPI RGGWCCY 1 cut(s) 718
PstNI CAGNNNCTG 1 cut(s) 38
PsuI RGATCY 4 cut(s) 41, 439, 787, 1003
PvuII CAGCTG 1 cut(s) 56
RsaI GTAC 4 cut(s) 336, 495, 504, 870
RsaNI GTAC 4 cut(s) 335, 494, 503, 869
RseI CAYNNNNRTG 1 cut(s) 812
SaqAI TTAA 3 cut(s) 411, 669, 984
SatI GCNGC 5 cut(s) 33, 36, 57, 353, 744
Sau3AI GATC 5 cut(s) 41, 235, 439, 787, 1003
Sau96I GGNCC 2 cut(s) 69, 718
ScrFI CCNGG 2 cut(s) 64, 1035
SduI GDGCHC 3 cut(s) 516, 621, 1044
SfaNI GCATC 1 cut(s) 701
SfoI GGCGCC 1 cut(s) 18
SinI GGWCC 2 cut(s) 69, 718
SmiMI CAYNNNNRTG 1 cut(s) 812
SpeI ACTAGT 1 cut(s) 881
SphI GCATGC 1 cut(s) 120
Sse9I AATT 9 cut(s) 126, 147, 228, 382, 623, 658, 764, 829, 969
SsiI CCGC 3 cut(s) 36, 556, 936
SspDI GGCGCC 1 cut(s) 16
SspI AATATT 1 cut(s) 86
SspMI CTAG 3 cut(s) 24, 270, 882
StyD4I CCNGG 2 cut(s) 62, 1033
StyI CCWWGG 3 cut(s) 910, 957, 989
TaaI ACNGT 4 cut(s) 334, 432, 845, 931
TaqI TCGA 1 cut(s) 875
TaqII GACCGA 1 cut(s) 314
TasI AATT 9 cut(s) 126, 147, 228, 382, 623, 658, 764, 829, 969
TatI WGTACW 1 cut(s) 868
TauI GCSGC 1 cut(s) 38
TfiI GAWTC 2 cut(s) 50, 394
Tru1I TTAA 3 cut(s) 411, 669, 984
Tru9I TTAA 3 cut(s) 411, 669, 984
TscAI CASTG 1 cut(s) 934
TseFI GTSAC 1 cut(s) 608
TseI GCWGC 4 cut(s) 32, 56, 352, 743
Tsp45I GTSAC 1 cut(s) 608
TspDTI ATGAA 4 cut(s) 148, 169, 258, 362
TspRI CASTG 1 cut(s) 934
Van91I CCANNNNNTGG 1 cut(s) 885
VpaK11BI GGWCC 2 cut(s) 69, 718
XapI RAATTY 2 cut(s) 623, 658
XbaI TCTAGA 1 cut(s) 269
XceI RCATGY 2 cut(s) 120, 815
XmiI GTMKAC 1 cut(s) 256
XmnI GAANNNNTTC 1 cut(s) 905
XspI CTAG 3 cut(s) 24, 270, 882
Zsp2I ATGCAT 1 cut(s) 694
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.