Rh3BG326000

ALA-interacting subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0001483
Physical Location & Seq
Forward (+)
33873612 .. 33876761
3150 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG326000.1

Sequence Viewer

Length: 1056 bp
ATGACCCCAAAAGGTGACAAGGGCAAAGAAGGAGACTCGTCCTTTGCCAAAAAGAAGTCCAGAAGACCCAAATATTCCAGGTTCTCACAGCAAGAGCTTCCAGCTTGCAAACCAATTTTGTCACCAGGATGGGTGGTTTCAATATTCATCACCATTGGCATTGTCTTTATCCCAATTGGCTTTGCTGCCTTATTCGCCTCAGAGCGTGTTGTGGAACTGCAATTCCAGTATGACCAAGATTGTGTTCCTGCAAAGTATAAGGATAATATGGTTGCATATATTCAAAGCAATGGCACTGACAAGACCTGCACGAGGAAAATGCCTGCTGTTACAAGTAAAATGAAATCTCCCATTTATGTCTACTATCAGATTGATCACTACTTTCAGAATCATCGCCGATATGTTAAAAGTAGAAGTGATGATCAGTTGCGGAGCGTGGCAAACGAAAATAGCACAAGCGACTGTGCGCCTGAACGCTTTGCGAAAAATGGTCAACCAATTGTTCCTTGTGGCCTCGTTGCATGGAGTTTGTTTAATGACACATATAAGTTTTCAGTGAAAAACAAAACAATAGCGGTCAGCAAAAAGGACATCACATGGAAAAGTGACCGTGAGAAAAAGTTTTCAAGCAGTGTCTATCCTAAGAACTTTCAGTCTGGGGGTTTGATTGGAGGAGCAAAGCTCAATTCTAGCATACCTCTGAGCCAACAAGAGGATCTTATTGTTTGGATGCGAACTGCAGCAATGCCATCTTTTAGAAAACTGTATGGGAGGATAGAAGTGGACCTTGAGGCTCATGATGAAATAACAATAGAACTACAGAATAACTATAATACCTACAGCTTTAAAGGCAGCAAGTCAGTGATACTTTCTACTGCGAGTTGGATTGGTGGAAAGAATGATCTAATGGGCATAGCATACCTTACTATTGGTGGAATGTGTTTGTTCTTGGCAATATGCTTCATACTTATGTATGTGCTCAAGCCGAGACCTCTTGGGGATACCTCCTACTTGTCTTGGAATAGAAATGCATCAGGAGGAGGCCTAAATTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CDC50

Protein Analysis

351

Amino Acids

39.49

Weight (kDa)

9.46

Isoelectric Point (pI)

46.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CDC50 PF03381 64 - 330 2.7e-85 LEM3 (ligand-effect modulator 3) family / CDC50 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 314
AccI GTMKAC 1 cut(s) 360
AciI CCGC 2 cut(s) 430, 575
AclWI GGATC 1 cut(s) 723
AcsI RAATTY 1 cut(s) 1048
AfiI CCNNNNNNNGG 2 cut(s) 312, 712
AgsI TTSAA 3 cut(s) 141, 284, 627
AjnI CCWGG 2 cut(s) 77, 124
AjuI GAANNNNNNNTTGG 2 cut(s) 228, 260
AloI GAACNNNNNNTCC 2 cut(s) 207, 239
AluBI AGCT 4 cut(s) 97, 104, 682, 843
AluI AGCT 4 cut(s) 97, 104, 682, 843
Alw21I GWGCWC 1 cut(s) 981
Alw26I GTCTC 2 cut(s) 27, 982
AlwI GGATC 1 cut(s) 723
AoxI GGCC 2 cut(s) 511, 1042
ApeKI GCWGC 3 cut(s) 185, 740, 852
ApoI RAATTY 1 cut(s) 1048
ArsI GACNNNNNNTTYG 2 cut(s) 26, 58
AspLEI GCGC 1 cut(s) 469
AspS9I GGNCC 1 cut(s) 784
AsuHPI GGTGA 3 cut(s) 26, 114, 142
AvaII GGWCC 1 cut(s) 784
BauI CACGAG 1 cut(s) 310
BbsI GAAGAC 1 cut(s) 70
Bbv12I GWGCWC 1 cut(s) 981
BbvI GCAGC 3 cut(s) 172, 752, 864
BccI CCATC 2 cut(s) 123, 757
BcgI CGANNNNNNTGC 2 cut(s) 301, 335
BciT130I CCWGG 2 cut(s) 79, 126
BciVI GTATCC 1 cut(s) 994
BclI TGATCA 2 cut(s) 373, 421
BcoDI GTCTC 2 cut(s) 27, 982
BfaI CTAG 1 cut(s) 690
BfmI CTRYAG 3 cut(s) 738, 818, 838
BfuAI ACCTGC 1 cut(s) 314
BfuI GTATCC 1 cut(s) 994
BisI GCNGC 3 cut(s) 186, 741, 853
BlsI GCNGC 3 cut(s) 187, 742, 854
Bme1390I CCNGG 2 cut(s) 79, 126
Bme18I GGWCC 1 cut(s) 784
BmgT120I GGNCC 1 cut(s) 784
BmrFI CCNGG 2 cut(s) 79, 126
BmsI GCATC 2 cut(s) 720, 1040
BpiI GAAGAC 1 cut(s) 70
BplI GAGNNNNNCTC 2 cut(s) 666, 698
BpuEI CTTGAG 2 cut(s) 809, 965
BsaI GGTCTC 1 cut(s) 982
Bsc4I CCNNNNNNNGG 2 cut(s) 312, 712
Bse1I ACTGG 1 cut(s) 226
Bse3DI GCAATG 2 cut(s) 295, 750
BseBI CCWGG 2 cut(s) 79, 126
BseGI GGATG 2 cut(s) 134, 735
BseLI CCNNNNNNNGG 2 cut(s) 312, 712
BseMI GCAATG 2 cut(s) 295, 750
BseMII CTCAG 2 cut(s) 213, 692
BseNI ACTGG 1 cut(s) 226
BseRI GAGGAG 2 cut(s) 687, 1053
BseXI GCAGC 3 cut(s) 172, 752, 864
BsgI GTGCAG 1 cut(s) 292
BshFI GGCC 2 cut(s) 513, 1044
BsiHKAI GWGCWC 1 cut(s) 981
BslI CCNNNNNNNGG 2 cut(s) 312, 712
BsmAI GTCTC 2 cut(s) 27, 982
BsnI GGCC 2 cut(s) 513, 1044
Bso31I GGTCTC 1 cut(s) 982
Bsp1286I GDGCHC 1 cut(s) 981
Bsp143I GATC 4 cut(s) 373, 421, 715, 901
BspACI CCGC 2 cut(s) 430, 575
BspANI GGCC 2 cut(s) 513, 1044
BspCNI CTCAG 2 cut(s) 212, 693
BspHI TCATGA 1 cut(s) 796
BspMAI CTGCAG 1 cut(s) 742
BspMI ACCTGC 1 cut(s) 314
BspPI GGATC 1 cut(s) 723
BspTNI GGTCTC 1 cut(s) 982
BsrDI GCAATG 2 cut(s) 295, 750
BsrI ACTGG 1 cut(s) 226
BssMI GATC 4 cut(s) 373, 421, 715, 901
BssSI CACGAG 1 cut(s) 310
Bst2BI CACGAG 1 cut(s) 310
Bst2UI CCWGG 2 cut(s) 79, 126
Bst4CI ACNGT 3 cut(s) 464, 611, 765
BstC8I GCNNGC 2 cut(s) 106, 324
BstDEI CTNAG 3 cut(s) 199, 642, 701
BstENI CCTNNNNNAGG 1 cut(s) 310
BstF5I GGATG 2 cut(s) 134, 735
BstHHI GCGC 1 cut(s) 469
BstKTI GATC 4 cut(s) 376, 424, 718, 904
BstMAI GTCTC 2 cut(s) 27, 982
BstMBI GATC 4 cut(s) 373, 421, 715, 901
BstMWI GCNNNNNNNGC 2 cut(s) 194, 849
BstNI CCWGG 2 cut(s) 79, 126
BstSCI CCNGG 2 cut(s) 77, 124
BstSFI CTRYAG 3 cut(s) 738, 818, 838
BstV1I GCAGC 3 cut(s) 172, 752, 864
BstV2I GAAGAC 1 cut(s) 70
BstX2I RGATCY 1 cut(s) 715
BstYI RGATCY 1 cut(s) 715
BsuI GTATCC 1 cut(s) 994
BsuRI GGCC 2 cut(s) 513, 1044
BtgZI GCGATG 1 cut(s) 377
BtsCI GGATG 2 cut(s) 134, 735
BtsI GCAGTG 1 cut(s) 637
BtsIMutI CAGTG 4 cut(s) 294, 561, 637, 867
BveI ACCTGC 1 cut(s) 314
Cac8I GCNNGC 2 cut(s) 106, 324
CciI TCATGA 1 cut(s) 796
CfoI GCGC 1 cut(s) 469
Cfr13I GGNCC 1 cut(s) 784
CviAII CATG 3 cut(s) 522, 597, 797
DdeI CTNAG 3 cut(s) 199, 642, 701
DpnI GATC 4 cut(s) 375, 423, 717, 903
DpnII GATC 4 cut(s) 373, 421, 715, 901
DraI TTTAAA 1 cut(s) 847
Eco147I AGGCCT 1 cut(s) 1044
Eco31I GGTCTC 1 cut(s) 982
Eco47I GGWCC 1 cut(s) 784
EcoNI CCTNNNNNAGG 1 cut(s) 310
EcoRII CCWGG 2 cut(s) 77, 124
EcoT22I ATGCAT 1 cut(s) 1033
FaeI CATG 3 cut(s) 525, 600, 800
FalI AAGNNNNNCTT 4 cut(s) 702, 734, 771, 803
FatI CATG 3 cut(s) 521, 596, 796
FbaI TGATCA 2 cut(s) 373, 421
FblI GTMKAC 1 cut(s) 360
Fnu4HI GCNGC 3 cut(s) 186, 741, 853
FokI GGATG 2 cut(s) 141, 742
Fsp4HI GCNGC 3 cut(s) 186, 741, 853
FspBI CTAG 1 cut(s) 690
GlaI GCGC 1 cut(s) 468
GluI GCNGC 3 cut(s) 186, 741, 853
HaeIII GGCC 2 cut(s) 513, 1044
HhaI GCGC 1 cut(s) 469
Hin1II CATG 3 cut(s) 525, 600, 800
Hin6I GCGC 1 cut(s) 467
HinP1I GCGC 1 cut(s) 467
HincII GTYRAC 1 cut(s) 494
HindII GTYRAC 1 cut(s) 494
HinfI GANTC 2 cut(s) 35, 388
HphI GGTGA 3 cut(s) 26, 114, 142
Hpy166II GTNNAC 3 cut(s) 361, 494, 784
Hpy188I TCNGA 4 cut(s) 202, 369, 387, 702
Hpy188III TCNNGA 3 cut(s) 60, 797, 1035
Hpy8I GTNNAC 3 cut(s) 361, 494, 784
HpyAV CCTTC 1 cut(s) 23
HpyCH4III ACNGT 3 cut(s) 464, 611, 765
HpyCH4V TGCA 8 cut(s) 108, 220, 251, 275, 309, 521, 740, 1031
HpyF10VI GCNNNNNNNGC 2 cut(s) 194, 849
HpyF3I CTNAG 3 cut(s) 199, 642, 701
Hsp92II CATG 3 cut(s) 525, 600, 800
HspAI GCGC 1 cut(s) 467
Ksp22I TGATCA 2 cut(s) 373, 421
Kzo9I GATC 4 cut(s) 373, 421, 715, 901
LmnI GCTCC 2 cut(s) 432, 674
Lsp1109I GCAGC 3 cut(s) 172, 752, 864
LweI GCATC 2 cut(s) 720, 1040
MaeI CTAG 1 cut(s) 690
MaeIII GTNAC 4 cut(s) 14, 120, 328, 605
MalI GATC 4 cut(s) 375, 423, 717, 903
MboI GATC 4 cut(s) 373, 421, 715, 901
MboII GAAGA 1 cut(s) 75
MfeI CAATTG 2 cut(s) 174, 498
MflI RGATCY 1 cut(s) 715
MhlI GDGCHC 1 cut(s) 981
MluCI AATT 6 cut(s) 114, 174, 221, 498, 685, 1048
MlyI GAGTC 1 cut(s) 29
MmeI TCCRAC 1 cut(s) 863
Mph1103I ATGCAT 1 cut(s) 1033
MseI TTAA 4 cut(s) 405, 534, 846, 1054
MslI CAYNNNNRTG 2 cut(s) 127, 968
MspR9I CCNGG 2 cut(s) 79, 126
MunI CAATTG 2 cut(s) 174, 498
MvaI CCWGG 2 cut(s) 79, 126
MwoI GCNNNNNNNGC 2 cut(s) 194, 849
NdeII GATC 4 cut(s) 373, 421, 715, 901
NlaIII CATG 3 cut(s) 525, 600, 800
NmeAIII GCCGAG 1 cut(s) 1011
NmuCI GTSAC 3 cut(s) 14, 120, 605
NsiI ATGCAT 1 cut(s) 1033
PagI TCATGA 1 cut(s) 796
PceI AGGCCT 1 cut(s) 1044
PfeI GAWTC 1 cut(s) 388
PkrI GCNGC 3 cut(s) 187, 742, 854
PleI GAGTC 1 cut(s) 29
PpsI GAGTC 1 cut(s) 29
Psp6I CCWGG 2 cut(s) 77, 124
PspGI CCWGG 2 cut(s) 77, 124
PspPI GGNCC 1 cut(s) 784
PstI CTGCAG 1 cut(s) 742
PsuI RGATCY 1 cut(s) 715
RseI CAYNNNNRTG 2 cut(s) 127, 968
SaqAI TTAA 4 cut(s) 405, 534, 846, 1054
SatI GCNGC 3 cut(s) 186, 741, 853
Sau3AI GATC 4 cut(s) 373, 421, 715, 901
Sau96I GGNCC 1 cut(s) 784
SchI GAGTC 1 cut(s) 29
ScrFI CCNGG 2 cut(s) 79, 126
SduI GDGCHC 1 cut(s) 981
SfaNI GCATC 2 cut(s) 720, 1040
SfcI CTRYAG 3 cut(s) 738, 818, 838
SinI GGWCC 1 cut(s) 784
SmiMI CAYNNNNRTG 2 cut(s) 127, 968
SmlI CTYRAG 2 cut(s) 788, 980
SmoI CTYRAG 2 cut(s) 788, 980
Sse9I AATT 6 cut(s) 114, 174, 221, 498, 685, 1048
SseBI AGGCCT 1 cut(s) 1044
SsiI CCGC 2 cut(s) 430, 575
SspI AATATT 2 cut(s) 74, 144
SspMI CTAG 1 cut(s) 690
StuI AGGCCT 1 cut(s) 1044
StyD4I CCNGG 2 cut(s) 77, 124
TaaI ACNGT 3 cut(s) 464, 611, 765
TasI AATT 6 cut(s) 114, 174, 221, 498, 685, 1048
TfiI GAWTC 1 cut(s) 388
Tru1I TTAA 4 cut(s) 405, 534, 846, 1054
Tru9I TTAA 4 cut(s) 405, 534, 846, 1054
TscAI CASTG 4 cut(s) 301, 561, 637, 867
TseFI GTSAC 3 cut(s) 14, 120, 605
TseI GCWGC 3 cut(s) 185, 740, 852
Tsp45I GTSAC 3 cut(s) 14, 120, 605
TspDTI ATGAA 4 cut(s) 136, 356, 816, 952
TspRI CASTG 4 cut(s) 301, 561, 637, 867
VpaK11BI GGWCC 1 cut(s) 784
XagI CCTNNNNNAGG 1 cut(s) 310
XapI RAATTY 1 cut(s) 1048
XmiI GTMKAC 1 cut(s) 360
XspI CTAG 1 cut(s) 690
Zsp2I ATGCAT 1 cut(s) 1033
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.