DNA binding domain with preference for A/T rich regions
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G19485 AT1G19485 |
| fragaria_vesca | FvH4_6g18260 FvH4_6g18260 FvH4_6g18260 FvH4_6g18260 FvH4_7g02500 |
| malus_domestica | MD09G1081300.v1.1 MD12G1022600.v1.1 |
| prunus_persica | Prupe.7G114200_v2.0.a1 Prupe.7G114200_v2.0.a1 |
| pyrus_communis | pycom09g00800 pycom12g02090 |
| rosa_chinensis | RchiOBHm_Chr3g0472691 RchiOBHm_Chr3g0472701 RchiOBHm_Chr4g0409331 |
| rosa_laevigata | RLG00000008568 RLG00000016132 RLG00000024063 |
| rosa_multiflora | Rmu_co8285783.1_g000001 Rmu_sc0001616.1_g000052 Rmu_sc0001616.1_g000057 Rmu_sc0001851.1_g000016 Rmu_sc0003510.1_g000010 Rmu_sc0003510.1_g000011 Rmu_sc0003510.1_g000012 Rmu_sc0034965.1_g000001 |
| rosa_roxburghii | Rroxscaffold_5G00353840 Rroxscaffold_6G00408710 |
| rosa_rugosa | Rorug03G0127200 Rorug04G0092400 Rorug04G0092500 |
| rosa_samantha | Rh3AG179900 Rh3BG205800 Rh3CG202900 Rh3DG169900 Rh4AG155600 Rh4BG153800 Rh4CG164600 Rh4DG148500 |
| rosa_wichuraiana | Rw3G016270 Rw4G012710 Rw4G012730 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 171, 515, 1761 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 577, 1536 |
| AccI | GTMKAC | 2 cut(s) | 691, 1331 |
| AciI | CCGC | 9 cut(s) | 267, 443, 540, 795, 1106, 2241, 2309, 2338, 2388 |
| AclI | AACGTT | 1 cut(s) | 2067 |
| AclWI | GGATC | 6 cut(s) | 1171, 1235, 1556, 1625, 2102, 2115 |
| AcoI | YGGCCR | 1 cut(s) | 541 |
| AcsI | RAATTY | 1 cut(s) | 781 |
| AcuI | CTGAAG | 5 cut(s) | 957, 1038, 1398, 1426, 1562 |
| AcyI | GRCGYC | 1 cut(s) | 1093 |
| AfaI | GTAC | 6 cut(s) | 709, 749, 906, 934, 990, 1596 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 482, 1007, 1684, 1715, 2430 |
| AflIII | ACRYGT | 1 cut(s) | 2098 |
| AgeI | ACCGGT | 1 cut(s) | 2003 |
| AgsI | TTSAA | 9 cut(s) | 755, 1273, 1281, 1288, 1325, 1770, 1793, 1984, 2038 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 301 |
| AjnI | CCWGG | 3 cut(s) | 1053, 1483, 2110 |
| Alw21I | GWGCWC | 2 cut(s) | 277, 2218 |
| Alw26I | GTCTC | 5 cut(s) | 585, 656, 910, 1994, 2036 |
| AlwI | GGATC | 6 cut(s) | 1171, 1235, 1556, 1625, 2102, 2115 |
| AoxI | GGCC | 4 cut(s) | 541, 641, 1056, 1721 |
| ApeKI | GCWGC | 5 cut(s) | 1232, 1638, 1817, 2150, 2267 |
| ApoI | RAATTY | 1 cut(s) | 781 |
| AsiGI | ACCGGT | 1 cut(s) | 2003 |
| AspLEI | GCGC | 1 cut(s) | 1448 |
| AspS9I | GGNCC | 3 cut(s) | 642, 1057, 1839 |
| AsuC2I | CCSGG | 1 cut(s) | 2392 |
| AsuHPI | GGTGA | 8 cut(s) | 101, 329, 611, 1121, 1499, 1699, 2009, 2018 |
| AsuII | TTCGAA | 2 cut(s) | 177, 2026 |
| AsuNHI | GCTAGC | 1 cut(s) | 2270 |
| AvaII | GGWCC | 1 cut(s) | 1839 |
| AxyI | CCTNAGG | 1 cut(s) | 1194 |
| BamHI | GGATCC | 1 cut(s) | 2107 |
| BanII | GRGCYC | 2 cut(s) | 277, 1483 |
| BauI | CACGAG | 2 cut(s) | 270, 1885 |
| BbsI | GAAGAC | 2 cut(s) | 867, 1026 |
| Bbv12I | GWGCWC | 2 cut(s) | 277, 2218 |
| BbvI | GCAGC | 5 cut(s) | 1219, 1625, 1829, 2162, 2279 |
| BccI | CCATC | 8 cut(s) | 228, 601, 1367, 1655, 1787, 1829, 2231, 2361 |
| BciT130I | CCWGG | 3 cut(s) | 1055, 1485, 2112 |
| BciVI | GTATCC | 2 cut(s) | 783, 804 |
| BclI | TGATCA | 1 cut(s) | 1495 |
| BcnI | CCSGG | 1 cut(s) | 2392 |
| BcoDI | GTCTC | 5 cut(s) | 585, 656, 910, 1994, 2036 |
| BfaI | CTAG | 5 cut(s) | 425, 696, 2049, 2087, 2271 |
| BfmI | CTRYAG | 1 cut(s) | 1830 |
| BfuI | GTATCC | 2 cut(s) | 783, 804 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1374 |
| BisI | GCNGC | 7 cut(s) | 541, 1233, 1639, 1818, 2151, 2268, 2388 |
| BlsI | GCNGC | 7 cut(s) | 542, 1234, 1640, 1819, 2152, 2269, 2389 |
| BmcAI | AGTACT | 2 cut(s) | 709, 934 |
| Bme1390I | CCNGG | 4 cut(s) | 1055, 1485, 2112, 2392 |
| Bme18I | GGWCC | 1 cut(s) | 1839 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 301 |
| BmgT120I | GGNCC | 3 cut(s) | 642, 1057, 1839 |
| BmiI | GGNNCC | 7 cut(s) | 1263, 1343, 1482, 1840, 2109, 2306, 2386 |
| BmrFI | CCNGG | 4 cut(s) | 1055, 1485, 2112, 2392 |
| BmrI | ACTGGG | 1 cut(s) | 1586 |
| BmsI | GCATC | 8 cut(s) | 330, 391, 501, 661, 2009, 2069, 2316, 2338 |
| BmtI | GCTAGC | 1 cut(s) | 2274 |
| BmuI | ACTGGG | 1 cut(s) | 1586 |
| BpiI | GAAGAC | 2 cut(s) | 867, 1026 |
| BpmI | CTGGAG | 2 cut(s) | 810, 1804 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1679 |
| Bpu14I | TTCGAA | 2 cut(s) | 177, 2026 |
| BpuEI | CTTGAG | 2 cut(s) | 172, 390 |
| BpuMI | CCSGG | 1 cut(s) | 2392 |
| BsaAI | YACGTR | 1 cut(s) | 1559 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2059 |
| BsaHI | GRCGYC | 1 cut(s) | 1093 |
| BsaI | GGTCTC | 1 cut(s) | 1994 |
| BsaJI | CCNNGG | 4 cut(s) | 279, 1037, 1598, 2438 |
| BsaWI | WCCGGW | 1 cut(s) | 2003 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 342, 372 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 482, 1007, 1684, 1715, 2430 |
| Bse118I | RCCGGY | 1 cut(s) | 2003 |
| Bse21I | CCTNAGG | 1 cut(s) | 1194 |
| Bse3DI | GCAATG | 2 cut(s) | 372, 2290 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2059 |
| BseBI | CCWGG | 3 cut(s) | 1055, 1485, 2112 |
| BseDI | CCNNGG | 4 cut(s) | 279, 1037, 1598, 2438 |
| BseGI | GGATG | 5 cut(s) | 10, 439, 652, 1186, 1968 |
| BseJI | GATNNNNATC | 1 cut(s) | 2059 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 482, 1007, 1684, 1715, 2430 |
| BseMI | GCAATG | 2 cut(s) | 372, 2290 |
| BseMII | CTCAG | 3 cut(s) | 36, 201, 2439 |
| BseRI | GAGGAG | 2 cut(s) | 792, 2210 |
| BseXI | GCAGC | 5 cut(s) | 1219, 1625, 1829, 2162, 2279 |
| BseYI | CCCAGC | 1 cut(s) | 1153 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1977 |
| BshFI | GGCC | 4 cut(s) | 543, 643, 1058, 1723 |
| BshTI | ACCGGT | 1 cut(s) | 2003 |
| BsiEI | CGRYCG | 1 cut(s) | 1977 |
| BsiHKAI | GWGCWC | 2 cut(s) | 277, 2218 |
| BsiSI | CCGG | 2 cut(s) | 2004, 2391 |
| BslFI | GGGAC | 3 cut(s) | 363, 1080, 1565 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 482, 1007, 1684, 1715, 2430 |
| BsmAI | GTCTC | 5 cut(s) | 585, 656, 910, 1994, 2036 |
| BsmFI | GGGAC | 3 cut(s) | 363, 1080, 1565 |
| BsmI | GAATGC | 1 cut(s) | 194 |
| BsnI | GGCC | 4 cut(s) | 543, 643, 1058, 1723 |
| Bso31I | GGTCTC | 1 cut(s) | 1994 |
| Bsp119I | TTCGAA | 2 cut(s) | 177, 2026 |
| Bsp1286I | GDGCHC | 3 cut(s) | 277, 1483, 2218 |
| Bsp143I | GATC | 7 cut(s) | 1163, 1240, 1495, 1561, 1630, 1974, 2107 |
| BspACI | CCGC | 9 cut(s) | 267, 443, 540, 795, 1106, 2241, 2309, 2338, 2388 |
| BspANI | GGCC | 4 cut(s) | 543, 643, 1058, 1723 |
| BspCNI | CTCAG | 3 cut(s) | 37, 202, 2438 |
| BspLI | GGNNCC | 7 cut(s) | 1263, 1343, 1482, 1840, 2109, 2306, 2386 |
| BspMAI | CTGCAG | 1 cut(s) | 1834 |
| BspOI | GCTAGC | 1 cut(s) | 2274 |
| BspPI | GGATC | 6 cut(s) | 1171, 1235, 1556, 1625, 2102, 2115 |
| BspQI | GCTCTTC | 1 cut(s) | 1038 |
| BspT104I | TTCGAA | 2 cut(s) | 177, 2026 |
| BspTNI | GGTCTC | 1 cut(s) | 1994 |
| BsrDI | GCAATG | 2 cut(s) | 372, 2290 |
| BsrFI | RCCGGY | 1 cut(s) | 2003 |
| BssAI | RCCGGY | 1 cut(s) | 2003 |
| BssECI | CCNNGG | 4 cut(s) | 279, 1037, 1598, 2438 |
| BssMI | GATC | 7 cut(s) | 1163, 1240, 1495, 1561, 1630, 1974, 2107 |
| BssNI | GRCGYC | 1 cut(s) | 1093 |
| BssSI | CACGAG | 2 cut(s) | 270, 1885 |
| BssT1I | CCWWGG | 3 cut(s) | 279, 1037, 1598 |
| Bst2BI | CACGAG | 2 cut(s) | 270, 1885 |
| Bst2UI | CCWGG | 3 cut(s) | 1055, 1485, 2112 |
| Bst4CI | ACNGT | 8 cut(s) | 30, 242, 458, 1002, 1321, 1381, 1766, 1920 |
| Bst6I | CTCTTC | 3 cut(s) | 698, 810, 1038 |
| BstACI | GRCGYC | 1 cut(s) | 1093 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2335 |
| BstBAI | YACGTR | 1 cut(s) | 1559 |
| BstBI | TTCGAA | 2 cut(s) | 177, 2026 |
| BstC8I | GCNNGC | 2 cut(s) | 641, 2272 |
| BstDEI | CTNAG | 8 cut(s) | 45, 210, 624, 675, 840, 1194, 1679, 2425 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 480 |
| BstF5I | GGATG | 5 cut(s) | 10, 439, 652, 1186, 1968 |
| BstHHI | GCGC | 1 cut(s) | 1448 |
| BstKTI | GATC | 7 cut(s) | 1166, 1243, 1498, 1564, 1633, 1977, 2110 |
| BstMAI | GTCTC | 5 cut(s) | 585, 656, 910, 1994, 2036 |
| BstMBI | GATC | 7 cut(s) | 1163, 1240, 1495, 1561, 1630, 1974, 2107 |
| BstMCI | CGRYCG | 1 cut(s) | 1977 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 649, 1205, 1374, 1454, 1532, 2280, 2335 |
| BstNI | CCWGG | 3 cut(s) | 1055, 1485, 2112 |
| BstNSI | RCATGY | 2 cut(s) | 347, 1535 |
| BstSCI | CCNGG | 4 cut(s) | 1053, 1483, 2110, 2390 |
| BstSFI | CTRYAG | 1 cut(s) | 1830 |
| BstV1I | GCAGC | 5 cut(s) | 1219, 1625, 1829, 2162, 2279 |
| BstV2I | GAAGAC | 2 cut(s) | 867, 1026 |
| BstX2I | RGATCY | 3 cut(s) | 1163, 1630, 2107 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1873 |
| BstYI | RGATCY | 3 cut(s) | 1163, 1630, 2107 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1194 |
| BsuI | GTATCC | 2 cut(s) | 783, 804 |
| BsuRI | GGCC | 4 cut(s) | 543, 643, 1058, 1723 |
| BtgZI | GCGATG | 1 cut(s) | 2339 |
| BtsCI | GGATG | 5 cut(s) | 10, 439, 652, 1186, 1968 |
| BtsI | GCAGTG | 3 cut(s) | 69, 1827, 1878 |
| BtsIMutI | CAGTG | 6 cut(s) | 26, 69, 75, 1827, 1878, 2216 |
| Cac8I | GCNNGC | 2 cut(s) | 641, 2272 |
| CfoI | GCGC | 1 cut(s) | 1448 |
| Cfr10I | RCCGGY | 1 cut(s) | 2003 |
| Cfr13I | GGNCC | 3 cut(s) | 642, 1057, 1839 |
| CseI | GACGC | 1 cut(s) | 1082 |
| Csp6I | GTAC | 6 cut(s) | 708, 748, 905, 933, 989, 1595 |
| CspAI | ACCGGT | 1 cut(s) | 2003 |
| CviAII | CATG | 7 cut(s) | 293, 344, 389, 955, 1476, 1532, 2347 |
| CviQI | GTAC | 6 cut(s) | 708, 748, 905, 933, 989, 1595 |
| DdeI | CTNAG | 8 cut(s) | 45, 210, 624, 675, 840, 1194, 1679, 2425 |
| DpnI | GATC | 7 cut(s) | 1165, 1242, 1497, 1563, 1632, 1976, 2109 |
| DpnII | GATC | 7 cut(s) | 1163, 1240, 1495, 1561, 1630, 1974, 2107 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 577, 1536 |
| DriI | GACNNNNNGTC | 1 cut(s) | 301 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 577, 1536 |
| EaeI | YGGCCR | 1 cut(s) | 541 |
| Eam1104I | CTCTTC | 3 cut(s) | 698, 810, 1038 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 301 |
| EarI | CTCTTC | 3 cut(s) | 698, 810, 1038 |
| EciI | GGCGGA | 2 cut(s) | 432, 2256 |
| Ecl136II | GAGCTC | 1 cut(s) | 275 |
| Eco130I | CCWWGG | 3 cut(s) | 279, 1037, 1598 |
| Eco147I | AGGCCT | 1 cut(s) | 1723 |
| Eco24I | GRGCYC | 2 cut(s) | 277, 1483 |
| Eco31I | GGTCTC | 1 cut(s) | 1994 |
| Eco32I | GATATC | 1 cut(s) | 121 |
| Eco47I | GGWCC | 1 cut(s) | 1839 |
| Eco53kI | GAGCTC | 1 cut(s) | 275 |
| Eco57I | CTGAAG | 5 cut(s) | 957, 1038, 1398, 1426, 1562 |
| Eco81I | CCTNAGG | 1 cut(s) | 1194 |
| EcoICRI | GAGCTC | 1 cut(s) | 275 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 480 |
| EcoRII | CCWGG | 3 cut(s) | 1053, 1483, 2110 |
| EcoRV | GATATC | 1 cut(s) | 121 |
| EcoT14I | CCWWGG | 3 cut(s) | 279, 1037, 1598 |
| EcoT22I | ATGCAT | 3 cut(s) | 345, 2062, 2331 |
| EcoT38I | GRGCYC | 2 cut(s) | 277, 1483 |
| ErhI | CCWWGG | 3 cut(s) | 279, 1037, 1598 |
| FaeI | CATG | 7 cut(s) | 296, 347, 392, 958, 1479, 1535, 2350 |
| FaqI | GGGAC | 3 cut(s) | 363, 1080, 1565 |
| FatI | CATG | 7 cut(s) | 292, 343, 388, 954, 1475, 1531, 2346 |
| FauI | CCCGC | 3 cut(s) | 802, 1099, 2316 |
| FauNDI | CATATG | 1 cut(s) | 1102 |
| FbaI | TGATCA | 1 cut(s) | 1495 |
| FblI | GTMKAC | 2 cut(s) | 691, 1331 |
| Fnu4HI | GCNGC | 7 cut(s) | 541, 1233, 1639, 1818, 2151, 2268, 2388 |
| FokI | GGATG | 5 cut(s) | 17, 426, 639, 1193, 1955 |
| FriOI | GRGCYC | 2 cut(s) | 277, 1483 |
| Fsp4HI | GCNGC | 7 cut(s) | 541, 1233, 1639, 1818, 2151, 2268, 2388 |
| FspBI | CTAG | 5 cut(s) | 425, 696, 2049, 2087, 2271 |
| GlaI | GCGC | 1 cut(s) | 1447 |
| GluI | GCNGC | 7 cut(s) | 541, 1233, 1639, 1818, 2151, 2268, 2388 |
| GsaI | CCCAGC | 1 cut(s) | 1157 |
| GsuI | CTGGAG | 2 cut(s) | 810, 1804 |
| HaeIII | GGCC | 4 cut(s) | 543, 643, 1058, 1723 |
| HapII | CCGG | 2 cut(s) | 2004, 2391 |
| HgaI | GACGC | 1 cut(s) | 1082 |
| HhaI | GCGC | 1 cut(s) | 1448 |
| Hin1I | GRCGYC | 1 cut(s) | 1093 |
| Hin1II | CATG | 7 cut(s) | 296, 347, 392, 958, 1479, 1535, 2350 |
| Hin6I | GCGC | 1 cut(s) | 1446 |
| HinP1I | GCGC | 1 cut(s) | 1446 |
| HincII | GTYRAC | 3 cut(s) | 847, 1332, 1923 |
| HindII | GTYRAC | 3 cut(s) | 847, 1332, 1923 |
| HindIII | AAGCTT | 2 cut(s) | 896, 1681 |
| HpaII | CCGG | 2 cut(s) | 2004, 2391 |
| HphI | GGTGA | 8 cut(s) | 101, 329, 611, 1121, 1499, 1699, 2009, 2018 |
| Hpy166II | GTNNAC | 5 cut(s) | 692, 847, 1332, 1916, 1923 |
| Hpy8I | GTNNAC | 5 cut(s) | 692, 847, 1332, 1916, 1923 |
| HpyAV | CCTTC | 8 cut(s) | 848, 1684, 1713, 1951, 2033, 2126, 2246, 2294 |
| HpyCH4III | ACNGT | 8 cut(s) | 30, 242, 458, 1002, 1321, 1381, 1766, 1920 |
| HpyCH4IV | ACGT | 5 cut(s) | 741, 750, 1558, 2067, 2100 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 649, 1205, 1374, 1454, 1532, 2280, 2335 |
| HpyF3I | CTNAG | 8 cut(s) | 45, 210, 624, 675, 840, 1194, 1679, 2425 |
| HpySE526I | ACGT | 5 cut(s) | 741, 750, 1558, 2067, 2100 |
| Hsp92I | GRCGYC | 1 cut(s) | 1093 |
| Hsp92II | CATG | 7 cut(s) | 296, 347, 392, 958, 1479, 1535, 2350 |
| HspAI | GCGC | 1 cut(s) | 1446 |
| Ksp22I | TGATCA | 1 cut(s) | 1495 |
| Kzo9I | GATC | 7 cut(s) | 1163, 1240, 1495, 1561, 1630, 1974, 2107 |
| LguI | GCTCTTC | 1 cut(s) | 1038 |
| LmnI | GCTCC | 6 cut(s) | 280, 1267, 1462, 1486, 2384, 2422 |
| Lsp1109I | GCAGC | 5 cut(s) | 1219, 1625, 1829, 2162, 2279 |
| LweI | GCATC | 8 cut(s) | 330, 391, 501, 661, 2009, 2069, 2316, 2338 |
| MaeI | CTAG | 5 cut(s) | 425, 696, 2049, 2087, 2271 |
| MaeII | ACGT | 5 cut(s) | 741, 750, 1558, 2067, 2100 |
| MaeIII | GTNAC | 5 cut(s) | 142, 458, 717, 829, 1623 |
| MalI | GATC | 7 cut(s) | 1165, 1242, 1497, 1563, 1632, 1976, 2109 |
| MboI | GATC | 7 cut(s) | 1163, 1240, 1495, 1561, 1630, 1974, 2107 |
| MflI | RGATCY | 3 cut(s) | 1163, 1630, 2107 |
| MhlI | GDGCHC | 3 cut(s) | 277, 1483, 2218 |
| MluCI | AATT | 4 cut(s) | 172, 257, 566, 781 |
| MlyI | GAGTC | 5 cut(s) | 58, 311, 443, 1891, 2129 |
| MmeI | TCCRAC | 3 cut(s) | 328, 961, 2444 |
| Mph1103I | ATGCAT | 3 cut(s) | 345, 2062, 2331 |
| MseI | TTAA | 4 cut(s) | 285, 1119, 1670, 1751 |
| MslI | CAYNNNNRTG | 2 cut(s) | 297, 953 |
| MspI | CCGG | 2 cut(s) | 2004, 2391 |
| MspR9I | CCNGG | 4 cut(s) | 1055, 1485, 2112, 2392 |
| Mva1269I | GAATGC | 1 cut(s) | 194 |
| MvaI | CCWGG | 3 cut(s) | 1055, 1485, 2112 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 649, 1205, 1374, 1454, 1532, 2280, 2335 |
| NciI | CCSGG | 1 cut(s) | 2392 |
| NdeI | CATATG | 1 cut(s) | 1102 |
| NdeII | GATC | 7 cut(s) | 1163, 1240, 1495, 1561, 1630, 1974, 2107 |
| NheI | GCTAGC | 1 cut(s) | 2270 |
| NlaIII | CATG | 7 cut(s) | 296, 347, 392, 958, 1479, 1535, 2350 |
| NlaIV | GGNNCC | 7 cut(s) | 1263, 1343, 1482, 1840, 2109, 2306, 2386 |
| NmeAIII | GCCGAG | 2 cut(s) | 657, 739 |
| NmuCI | GTSAC | 1 cut(s) | 458 |
| NsiI | ATGCAT | 3 cut(s) | 345, 2062, 2331 |
| NspI | RCATGY | 2 cut(s) | 347, 1535 |
| NspV | TTCGAA | 2 cut(s) | 177, 2026 |
| PceI | AGGCCT | 1 cut(s) | 1723 |
| PciSI | GCTCTTC | 1 cut(s) | 1038 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 747, 814 |
| PctI | GAATGC | 1 cut(s) | 194 |
| PfeI | GAWTC | 7 cut(s) | 68, 394, 1112, 1674, 1934, 2042, 2126 |
| PinAI | ACCGGT | 1 cut(s) | 2003 |
| PkrI | GCNGC | 7 cut(s) | 542, 1234, 1640, 1819, 2152, 2269, 2389 |
| Ple19I | CGATCG | 1 cut(s) | 1977 |
| PleI | GAGTC | 5 cut(s) | 57, 310, 443, 1891, 2128 |
| PpsI | GAGTC | 5 cut(s) | 57, 310, 443, 1891, 2128 |
| Ppu21I | YACGTR | 1 cut(s) | 1559 |
| PsiI | TTATAA | 3 cut(s) | 171, 515, 1761 |
| Psp124BI | GAGCTC | 1 cut(s) | 277 |
| Psp1406I | AACGTT | 1 cut(s) | 2067 |
| Psp6I | CCWGG | 3 cut(s) | 1053, 1483, 2110 |
| PspFI | CCCAGC | 1 cut(s) | 1153 |
| PspGI | CCWGG | 3 cut(s) | 1053, 1483, 2110 |
| PspN4I | GGNNCC | 7 cut(s) | 1263, 1343, 1482, 1840, 2109, 2306, 2386 |
| PspPI | GGNCC | 3 cut(s) | 642, 1057, 1839 |
| PstI | CTGCAG | 1 cut(s) | 1834 |
| PsuI | RGATCY | 3 cut(s) | 1163, 1630, 2107 |
| PvuI | CGATCG | 1 cut(s) | 1977 |
| RsaI | GTAC | 6 cut(s) | 709, 749, 906, 934, 990, 1596 |
| RsaNI | GTAC | 6 cut(s) | 708, 748, 905, 933, 989, 1595 |
| RseI | CAYNNNNRTG | 2 cut(s) | 297, 953 |
| SacI | GAGCTC | 1 cut(s) | 277 |
| SalI | GTCGAC | 1 cut(s) | 1330 |
| SapI | GCTCTTC | 1 cut(s) | 1038 |
| SaqAI | TTAA | 4 cut(s) | 285, 1119, 1670, 1751 |
| SatI | GCNGC | 7 cut(s) | 541, 1233, 1639, 1818, 2151, 2268, 2388 |
| Sau3AI | GATC | 7 cut(s) | 1163, 1240, 1495, 1561, 1630, 1974, 2107 |
| Sau96I | GGNCC | 3 cut(s) | 642, 1057, 1839 |
| ScaI | AGTACT | 2 cut(s) | 709, 934 |
| SchI | GAGTC | 5 cut(s) | 58, 311, 443, 1891, 2129 |
| ScrFI | CCNGG | 4 cut(s) | 1055, 1485, 2112, 2392 |
| SduI | GDGCHC | 3 cut(s) | 277, 1483, 2218 |
| SfaNI | GCATC | 8 cut(s) | 330, 391, 501, 661, 2009, 2069, 2316, 2338 |
| SfcI | CTRYAG | 1 cut(s) | 1830 |
| SfuI | TTCGAA | 2 cut(s) | 177, 2026 |
| SinI | GGWCC | 1 cut(s) | 1839 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 297, 953 |
| SmlI | CTYRAG | 2 cut(s) | 151, 405 |
| SmoI | CTYRAG | 2 cut(s) | 151, 405 |
| Sse9I | AATT | 4 cut(s) | 172, 257, 566, 781 |
| SseBI | AGGCCT | 1 cut(s) | 1723 |
| SsiI | CCGC | 9 cut(s) | 267, 443, 540, 795, 1106, 2241, 2309, 2338, 2388 |
| SspMI | CTAG | 5 cut(s) | 425, 696, 2049, 2087, 2271 |
| SstI | GAGCTC | 1 cut(s) | 277 |
| StuI | AGGCCT | 1 cut(s) | 1723 |
| StyD4I | CCNGG | 4 cut(s) | 1053, 1483, 2110, 2390 |
| StyI | CCWWGG | 3 cut(s) | 279, 1037, 1598 |
| TaaI | ACNGT | 8 cut(s) | 30, 242, 458, 1002, 1321, 1381, 1766, 1920 |
| TaiI | ACGT | 5 cut(s) | 744, 753, 1561, 2070, 2103 |
| TaqI | TCGA | 6 cut(s) | 177, 487, 583, 1331, 1854, 2026 |
| TasI | AATT | 4 cut(s) | 172, 257, 566, 781 |
| TatI | WGTACW | 2 cut(s) | 707, 932 |
| TauI | GCSGC | 2 cut(s) | 543, 2390 |
| TfiI | GAWTC | 7 cut(s) | 68, 394, 1112, 1674, 1934, 2042, 2126 |
| Tru1I | TTAA | 4 cut(s) | 285, 1119, 1670, 1751 |
| Tru9I | TTAA | 4 cut(s) | 285, 1119, 1670, 1751 |
| TscAI | CASTG | 6 cut(s) | 33, 69, 82, 1834, 1878, 2223 |
| TseFI | GTSAC | 1 cut(s) | 458 |
| TseI | GCWGC | 5 cut(s) | 1232, 1638, 1817, 2150, 2267 |
| Tsp45I | GTSAC | 1 cut(s) | 458 |
| TspDTI | ATGAA | 7 cut(s) | 377, 867, 1100, 1933, 1943, 2306, 2363 |
| TspGWI | ACGGA | 3 cut(s) | 922, 1554, 1559 |
| TspRI | CASTG | 6 cut(s) | 33, 69, 82, 1834, 1878, 2223 |
| VpaK11BI | GGWCC | 1 cut(s) | 1839 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 480 |
| XapI | RAATTY | 1 cut(s) | 781 |
| XceI | RCATGY | 2 cut(s) | 347, 1535 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2427 |
| XmiI | GTMKAC | 2 cut(s) | 691, 1331 |
| XspI | CTAG | 5 cut(s) | 425, 696, 2049, 2087, 2271 |
| ZrmI | AGTACT | 2 cut(s) | 709, 934 |
| Zsp2I | ATGCAT | 3 cut(s) | 345, 2062, 2331 |