WD40 repeats
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G19485 AT1G19485 |
| fragaria_vesca | FvH4_6g18260 FvH4_6g18260 FvH4_6g18260 FvH4_6g18260 FvH4_7g02500 |
| malus_domestica | MD09G1081300.v1.1 MD12G1022600.v1.1 |
| prunus_persica | Prupe.7G114200_v2.0.a1 Prupe.7G114200_v2.0.a1 |
| pyrus_communis | pycom09g00800 pycom12g02090 |
| rosa_chinensis | RchiOBHm_Chr3g0472691 RchiOBHm_Chr3g0472701 RchiOBHm_Chr4g0409331 |
| rosa_laevigata | RLG00000008568 RLG00000016132 RLG00000024063 |
| rosa_multiflora | Rmu_co8285783.1_g000001 Rmu_sc0001616.1_g000052 Rmu_sc0001616.1_g000057 Rmu_sc0001851.1_g000016 Rmu_sc0003510.1_g000010 Rmu_sc0003510.1_g000011 Rmu_sc0003510.1_g000012 Rmu_sc0034965.1_g000001 |
| rosa_roxburghii | Rroxscaffold_5G00353840 Rroxscaffold_6G00408710 |
| rosa_rugosa | Rorug03G0127200 Rorug04G0092400 Rorug04G0092500 |
| rosa_samantha | Rh3AG179900 Rh3BG205800 Rh3CG202900 Rh3DG169900 Rh4AG155600 Rh4BG153800 Rh4CG164600 Rh4DG148500 |
| rosa_wichuraiana | Rw3G016270 Rw4G012710 Rw4G012730 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 3194 |
| AccB1I | GGYRCC | 3 cut(s) | 445, 481, 998 |
| AciI | CCGC | 7 cut(s) | 12, 173, 245, 458, 769, 983, 1808 |
| AclWI | GGATC | 7 cut(s) | 964, 2137, 2201, 2567, 2636, 3029, 3135 |
| AcoI | YGGCCR | 3 cut(s) | 265, 405, 2539 |
| AcsI | RAATTY | 1 cut(s) | 2555 |
| AcuI | CTGAAG | 3 cut(s) | 553, 1827, 2388 |
| AcyI | GRCGYC | 1 cut(s) | 2062 |
| AfaI | GTAC | 7 cut(s) | 1647, 1753, 1770, 1884, 2913, 3175, 3405 |
| AgeI | ACCGGT | 1 cut(s) | 3244 |
| AjnI | CCWGG | 4 cut(s) | 420, 698, 952, 1633 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2994, 3026 |
| Alw21I | GWGCWC | 1 cut(s) | 597 |
| Alw26I | GTCTC | 2 cut(s) | 406, 623 |
| AlwI | GGATC | 7 cut(s) | 964, 2137, 2201, 2567, 2636, 3029, 3135 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2761 |
| Ama87I | CYCGRG | 1 cut(s) | 508 |
| ApaI | GGGCCC | 1 cut(s) | 2494 |
| ApeKI | GCWGC | 6 cut(s) | 619, 622, 941, 1091, 3068, 3392 |
| ApoI | RAATTY | 1 cut(s) | 2555 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2430, 2462 |
| AseI | ATTAAT | 2 cut(s) | 2384, 3270 |
| AsiGI | ACCGGT | 1 cut(s) | 3244 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 566, 1047, 3309 |
| AspA2I | CCTAGG | 1 cut(s) | 524 |
| AspLEI | GCGC | 4 cut(s) | 47, 390, 1742, 2862 |
| AspS9I | GGNCC | 6 cut(s) | 518, 860, 2490, 2491, 2563, 2758 |
| AsuHPI | GGTGA | 7 cut(s) | 614, 989, 2021, 2273, 2295, 2977, 3041 |
| AvaI | CYCGRG | 1 cut(s) | 508 |
| AvaII | GGWCC | 1 cut(s) | 2563 |
| AvrII | CCTAGG | 1 cut(s) | 524 |
| BaeGI | GKGCMC | 2 cut(s) | 2482, 2494 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2895, 2928 |
| BalI | TGGCCA | 2 cut(s) | 407, 2541 |
| BanI | GGYRCC | 3 cut(s) | 445, 481, 998 |
| BanII | GRGCYC | 2 cut(s) | 597, 2494 |
| BauI | CACGAG | 1 cut(s) | 2160 |
| BbsI | GAAGAC | 5 cut(s) | 1010, 1129, 1213, 1294, 1501 |
| Bbv12I | GWGCWC | 1 cut(s) | 597 |
| BbvI | GCAGC | 6 cut(s) | 606, 609, 928, 1103, 3080, 3404 |
| BceAI | ACGGC | 1 cut(s) | 920 |
| BciT130I | CCWGG | 4 cut(s) | 422, 700, 954, 1635 |
| BciVI | GTATCC | 1 cut(s) | 1633 |
| BclI | TGATCA | 3 cut(s) | 202, 1696, 3235 |
| BcoDI | GTCTC | 2 cut(s) | 406, 623 |
| BfmI | CTRYAG | 1 cut(s) | 1053 |
| BfuI | GTATCC | 1 cut(s) | 1633 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 1195, 2547 |
| BlnI | CCTAGG | 1 cut(s) | 524 |
| BlpI | GCTNAGC | 1 cut(s) | 2952 |
| BmcAI | AGTACT | 1 cut(s) | 1753 |
| Bme1390I | CCNGG | 4 cut(s) | 422, 700, 954, 1635 |
| Bme18I | GGWCC | 1 cut(s) | 2563 |
| BmeT110I | CYCGRG | 1 cut(s) | 508 |
| BmgT120I | GGNCC | 6 cut(s) | 518, 860, 2490, 2491, 2563, 2758 |
| BmiI | GGNNCC | 9 cut(s) | 357, 447, 462, 483, 1000, 2151, 2492, 2493, 2564 |
| BmrFI | CCNGG | 4 cut(s) | 422, 700, 954, 1635 |
| BmrI | ACTGGG | 2 cut(s) | 2489, 2903 |
| BmsI | GCATC | 9 cut(s) | 794, 2075, 2101, 2231, 2283, 2321, 2432, 2704, 3080 |
| BmuI | ACTGGG | 2 cut(s) | 2489, 2903 |
| BpiI | GAAGAC | 5 cut(s) | 1010, 1129, 1213, 1294, 1501 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 3163, 3195 |
| BpmI | CTGGAG | 5 cut(s) | 807, 1616, 1617, 2214, 2815 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2952 |
| BpuEI | CTTGAG | 3 cut(s) | 1407, 1740, 2412 |
| Bsa29I | ATCGAT | 2 cut(s) | 2095, 2598 |
| BsaAI | YACGTR | 1 cut(s) | 2570 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1701, 2466 |
| BsaHI | GRCGYC | 1 cut(s) | 2062 |
| BsaI | GGTCTC | 2 cut(s) | 406, 623 |
| BsaWI | WCCGGW | 2 cut(s) | 448, 3244 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 805, 835, 849, 879, 2994, 3024 |
| Bse118I | RCCGGY | 3 cut(s) | 463, 478, 3244 |
| Bse1I | ACTGG | 6 cut(s) | 994, 1599, 1974, 2231, 2495, 2909 |
| Bse3DI | GCAATG | 1 cut(s) | 3336 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1701, 2466 |
| BseBI | CCWGG | 4 cut(s) | 422, 700, 954, 1635 |
| BseCI | ATCGAT | 2 cut(s) | 2095, 2598 |
| BseJI | GATNNNNATC | 2 cut(s) | 1701, 2466 |
| BseMI | GCAATG | 1 cut(s) | 3336 |
| BseMII | CTCAG | 8 cut(s) | 420, 567, 582, 1176, 2704, 2943, 3161, 3420 |
| BseNI | ACTGG | 6 cut(s) | 994, 1599, 1974, 2231, 2495, 2909 |
| BseRI | GAGGAG | 1 cut(s) | 755 |
| BseSI | GKGCMC | 2 cut(s) | 2482, 2494 |
| BseXI | GCAGC | 6 cut(s) | 606, 609, 928, 1103, 3080, 3404 |
| BsgI | GTGCAG | 6 cut(s) | 1110, 1857, 2478, 2747, 2862, 3271 |
| BshNI | GGYRCC | 3 cut(s) | 445, 481, 998 |
| BshTI | ACCGGT | 1 cut(s) | 3244 |
| BshVI | ATCGAT | 2 cut(s) | 2095, 2598 |
| BsiHKAI | GWGCWC | 1 cut(s) | 597 |
| BsiHKCI | CYCGRG | 1 cut(s) | 508 |
| BsiSI | CCGG | 6 cut(s) | 264, 449, 464, 479, 500, 3245 |
| BsiWI | CGTACG | 1 cut(s) | 3403 |
| BslFI | GGGAC | 6 cut(s) | 824, 1348, 2568, 2576, 2606, 3307 |
| BsmAI | GTCTC | 2 cut(s) | 406, 623 |
| BsmFI | GGGAC | 6 cut(s) | 824, 1348, 2568, 2576, 2606, 3307 |
| BsmI | GAATGC | 2 cut(s) | 1393, 1603 |
| Bso31I | GGTCTC | 2 cut(s) | 406, 623 |
| BsoBI | CYCGRG | 1 cut(s) | 508 |
| Bsp120I | GGGCCC | 1 cut(s) | 2490 |
| Bsp1286I | GDGCHC | 3 cut(s) | 597, 2482, 2494 |
| Bsp1407I | TGTACA | 2 cut(s) | 1645, 1882 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2952 |
| Bsp19I | CCATGG | 2 cut(s) | 2032, 2542 |
| BspACI | CCGC | 7 cut(s) | 12, 173, 245, 458, 769, 983, 1808 |
| BspCNI | CTCAG | 8 cut(s) | 421, 566, 583, 1177, 2703, 2944, 3160, 3421 |
| BspDI | ATCGAT | 2 cut(s) | 2095, 2598 |
| BspHI | TCATGA | 4 cut(s) | 895, 904, 1444, 1894 |
| BspLI | GGNNCC | 9 cut(s) | 357, 447, 462, 483, 1000, 2151, 2492, 2493, 2564 |
| BspPI | GGATC | 7 cut(s) | 964, 2137, 2201, 2567, 2636, 3029, 3135 |
| BspQI | GCTCTTC | 1 cut(s) | 3255 |
| BspT107I | GGYRCC | 3 cut(s) | 445, 481, 998 |
| BspTNI | GGTCTC | 2 cut(s) | 406, 623 |
| BsrDI | GCAATG | 1 cut(s) | 3336 |
| BsrFI | RCCGGY | 3 cut(s) | 463, 478, 3244 |
| BsrGI | TGTACA | 2 cut(s) | 1645, 1882 |
| BsrI | ACTGG | 6 cut(s) | 994, 1599, 1974, 2231, 2495, 2909 |
| BssAI | RCCGGY | 3 cut(s) | 463, 478, 3244 |
| BssNI | GRCGYC | 1 cut(s) | 2062 |
| BssSI | CACGAG | 1 cut(s) | 2160 |
| BssT1I | CCWWGG | 7 cut(s) | 364, 524, 1251, 2032, 2542, 2609, 2645 |
| Bst2BI | CACGAG | 1 cut(s) | 2160 |
| Bst2UI | CCWGG | 4 cut(s) | 422, 700, 954, 1635 |
| Bst4CI | ACNGT | 7 cut(s) | 101, 253, 911, 1645, 2287, 2347, 2854 |
| Bst6I | CTCTTC | 8 cut(s) | 67, 72, 319, 339, 1623, 2358, 2963, 3255 |
| BstACI | GRCGYC | 1 cut(s) | 2062 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1737, 2761 |
| BstAUI | TGTACA | 2 cut(s) | 1645, 1882 |
| BstBAI | YACGTR | 1 cut(s) | 2570 |
| BstC8I | GCNNGC | 7 cut(s) | 35, 386, 718, 1854, 2090, 2539, 2762 |
| BstDSI | CCRYGG | 2 cut(s) | 2032, 2542 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 2367, 2724 |
| BstHHI | GCGC | 4 cut(s) | 47, 390, 1742, 2862 |
| BstMAI | GTCTC | 2 cut(s) | 406, 623 |
| BstNI | CCWGG | 4 cut(s) | 422, 700, 954, 1635 |
| BstNSI | RCATGY | 1 cut(s) | 1856 |
| BstSCI | CCNGG | 4 cut(s) | 420, 698, 952, 1633 |
| BstSFI | CTRYAG | 1 cut(s) | 1053 |
| BstSLI | GKGCMC | 2 cut(s) | 2482, 2494 |
| BstV1I | GCAGC | 6 cut(s) | 606, 609, 928, 1103, 3080, 3404 |
| BstV2I | GAAGAC | 5 cut(s) | 1010, 1129, 1213, 1294, 1501 |
| BstX2I | RGATCY | 3 cut(s) | 956, 2129, 2641 |
| BstYI | RGATCY | 3 cut(s) | 956, 2129, 2641 |
| Bsu15I | ATCGAT | 2 cut(s) | 2095, 2598 |
| BsuI | GTATCC | 1 cut(s) | 1633 |
| BsuTUI | ATCGAT | 2 cut(s) | 2095, 2598 |
| BtgI | CCRYGG | 2 cut(s) | 2032, 2542 |
| BtsI | GCAGTG | 1 cut(s) | 2007 |
| BtsIMutI | CAGTG | 6 cut(s) | 561, 760, 1592, 1722, 2007, 2461 |
| Cac8I | GCNNGC | 7 cut(s) | 35, 386, 718, 1854, 2090, 2539, 2762 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2761 |
| CciI | TCATGA | 4 cut(s) | 895, 904, 1444, 1894 |
| CfoI | GCGC | 4 cut(s) | 47, 390, 1742, 2862 |
| Cfr10I | RCCGGY | 3 cut(s) | 463, 478, 3244 |
| Cfr13I | GGNCC | 6 cut(s) | 518, 860, 2490, 2491, 2563, 2758 |
| ClaI | ATCGAT | 2 cut(s) | 2095, 2598 |
| CseI | GACGC | 1 cut(s) | 2051 |
| Csp6I | GTAC | 7 cut(s) | 1646, 1752, 1769, 1883, 2912, 3174, 3404 |
| CspAI | ACCGGT | 1 cut(s) | 3244 |
| CviQI | GTAC | 7 cut(s) | 1646, 1752, 1769, 1883, 2912, 3174, 3404 |
| EaeI | YGGCCR | 3 cut(s) | 265, 405, 2539 |
| Eam1104I | CTCTTC | 8 cut(s) | 67, 72, 319, 339, 1623, 2358, 2963, 3255 |
| EarI | CTCTTC | 8 cut(s) | 67, 72, 319, 339, 1623, 2358, 2963, 3255 |
| EciI | GGCGGA | 1 cut(s) | 473 |
| Ecl136II | GAGCTC | 1 cut(s) | 595 |
| Eco130I | CCWWGG | 7 cut(s) | 364, 524, 1251, 2032, 2542, 2609, 2645 |
| Eco147I | AGGCCT | 3 cut(s) | 1114, 1198, 2550 |
| Eco24I | GRGCYC | 2 cut(s) | 597, 2494 |
| Eco31I | GGTCTC | 2 cut(s) | 406, 623 |
| Eco47I | GGWCC | 1 cut(s) | 2563 |
| Eco53kI | GAGCTC | 1 cut(s) | 595 |
| Eco57I | CTGAAG | 3 cut(s) | 553, 1827, 2388 |
| Eco88I | CYCGRG | 1 cut(s) | 508 |
| EcoICRI | GAGCTC | 1 cut(s) | 595 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 2367, 2724 |
| EcoO109I | RGGNCCY | 4 cut(s) | 860, 2491, 2563, 2758 |
| EcoRII | CCWGG | 4 cut(s) | 420, 698, 952, 1633 |
| EcoT14I | CCWWGG | 7 cut(s) | 364, 524, 1251, 2032, 2542, 2609, 2645 |
| EcoT22I | ATGCAT | 3 cut(s) | 2425, 3125, 3336 |
| EcoT38I | GRGCYC | 2 cut(s) | 597, 2494 |
| ErhI | CCWWGG | 7 cut(s) | 364, 524, 1251, 2032, 2542, 2609, 2645 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 295, 327 |
| FaqI | GGGAC | 6 cut(s) | 824, 1348, 2568, 2576, 2606, 3307 |
| FbaI | TGATCA | 3 cut(s) | 202, 1696, 3235 |
| FriOI | GRGCYC | 2 cut(s) | 597, 2494 |
| GlaI | GCGC | 4 cut(s) | 46, 389, 1741, 2861 |
| GsuI | CTGGAG | 5 cut(s) | 807, 1616, 1617, 2214, 2815 |
| HapII | CCGG | 6 cut(s) | 264, 449, 464, 479, 500, 3245 |
| HgaI | GACGC | 1 cut(s) | 2051 |
| HhaI | GCGC | 4 cut(s) | 47, 390, 1742, 2862 |
| Hin1I | GRCGYC | 1 cut(s) | 2062 |
| Hin6I | GCGC | 4 cut(s) | 45, 388, 1740, 2860 |
| HinP1I | GCGC | 4 cut(s) | 45, 388, 1740, 2860 |
| HincII | GTYRAC | 2 cut(s) | 1321, 1528 |
| HindII | GTYRAC | 2 cut(s) | 1321, 1528 |
| HindIII | AAGCTT | 2 cut(s) | 31, 3111 |
| HpaII | CCGG | 6 cut(s) | 264, 449, 464, 479, 500, 3245 |
| HphI | GGTGA | 7 cut(s) | 614, 989, 2021, 2273, 2295, 2977, 3041 |
| Hpy166II | GTNNAC | 4 cut(s) | 256, 657, 1321, 1528 |
| Hpy8I | GTNNAC | 4 cut(s) | 256, 657, 1321, 1528 |
| HpyAV | CCTTC | 7 cut(s) | 25, 446, 1037, 2363, 2373, 2695, 3324 |
| HpyCH4III | ACNGT | 7 cut(s) | 101, 253, 911, 1645, 2287, 2347, 2854 |
| HpyCH4IV | ACGT | 3 cut(s) | 2569, 2873, 3406 |
| HpySE526I | ACGT | 3 cut(s) | 2569, 2873, 3406 |
| Hsp92I | GRCGYC | 1 cut(s) | 2062 |
| HspAI | GCGC | 4 cut(s) | 45, 388, 1740, 2860 |
| Ksp22I | TGATCA | 3 cut(s) | 202, 1696, 3235 |
| LguI | GCTCTTC | 1 cut(s) | 3255 |
| LmnI | GCTCC | 5 cut(s) | 42, 460, 1636, 1747, 2365 |
| Lsp1109I | GCAGC | 6 cut(s) | 606, 609, 928, 1103, 3080, 3404 |
| LweI | GCATC | 9 cut(s) | 794, 2075, 2101, 2231, 2283, 2321, 2432, 2704, 3080 |
| MaeII | ACGT | 3 cut(s) | 2569, 2873, 3406 |
| MaeIII | GTNAC | 3 cut(s) | 1939, 2261, 2347 |
| MfeI | CAATTG | 2 cut(s) | 1342, 2166 |
| MflI | RGATCY | 3 cut(s) | 956, 2129, 2641 |
| MhlI | GDGCHC | 3 cut(s) | 597, 2482, 2494 |
| MlsI | TGGCCA | 2 cut(s) | 407, 2541 |
| MluNI | TGGCCA | 2 cut(s) | 407, 2541 |
| MlyI | GAGTC | 6 cut(s) | 284, 545, 582, 1468, 1666, 2879 |
| MmeI | TCCRAC | 3 cut(s) | 298, 835, 1704 |
| Mox20I | TGGCCA | 2 cut(s) | 407, 2541 |
| Mph1103I | ATGCAT | 3 cut(s) | 2425, 3125, 3336 |
| MroXI | GAANNNNTTC | 3 cut(s) | 566, 1047, 3309 |
| MscI | TGGCCA | 2 cut(s) | 407, 2541 |
| MseI | TTAA | 8 cut(s) | 687, 1833, 2070, 2321, 2384, 3141, 3183, 3270 |
| Msp20I | TGGCCA | 2 cut(s) | 407, 2541 |
| MspA1I | CMGCKG | 2 cut(s) | 245, 3395 |
| MspI | CCGG | 6 cut(s) | 264, 449, 464, 479, 500, 3245 |
| MspR9I | CCNGG | 4 cut(s) | 422, 700, 954, 1635 |
| MunI | CAATTG | 2 cut(s) | 1342, 2166 |
| Mva1269I | GAATGC | 2 cut(s) | 1393, 1603 |
| MvaI | CCWGG | 4 cut(s) | 422, 700, 954, 1635 |
| NcoI | CCATGG | 2 cut(s) | 2032, 2542 |
| NlaIV | GGNNCC | 9 cut(s) | 357, 447, 462, 483, 1000, 2151, 2492, 2493, 2564 |
| NmuCI | GTSAC | 1 cut(s) | 2261 |
| NsiI | ATGCAT | 3 cut(s) | 2425, 3125, 3336 |
| NspI | RCATGY | 1 cut(s) | 1856 |
| PaeI | GCATGC | 1 cut(s) | 1856 |
| PaeR7I | CTCGAG | 1 cut(s) | 508 |
| PagI | TCATGA | 4 cut(s) | 895, 904, 1444, 1894 |
| PasI | CCCWGGG | 1 cut(s) | 699 |
| PceI | AGGCCT | 3 cut(s) | 1114, 1198, 2550 |
| PciSI | GCTCTTC | 1 cut(s) | 3255 |
| PctI | GAATGC | 2 cut(s) | 1393, 1603 |
| PdmI | GAANNNNTTC | 3 cut(s) | 566, 1047, 3309 |
| Pfl23II | CGTACG | 1 cut(s) | 3403 |
| PflFI | GACNNNGTC | 1 cut(s) | 2888 |
| PinAI | ACCGGT | 1 cut(s) | 3244 |
| PleI | GAGTC | 6 cut(s) | 284, 545, 581, 1468, 1666, 2879 |
| PpsI | GAGTC | 6 cut(s) | 284, 545, 581, 1468, 1666, 2879 |
| Ppu21I | YACGTR | 1 cut(s) | 2570 |
| PpuMI | RGGWCCY | 1 cut(s) | 2563 |
| PshBI | ATTAAT | 2 cut(s) | 2384, 3270 |
| PsiI | TTATAA | 1 cut(s) | 3194 |
| Psp124BI | GAGCTC | 1 cut(s) | 597 |
| Psp5II | RGGWCCY | 1 cut(s) | 2563 |
| Psp6I | CCWGG | 4 cut(s) | 420, 698, 952, 1633 |
| PspGI | CCWGG | 4 cut(s) | 420, 698, 952, 1633 |
| PspLI | CGTACG | 1 cut(s) | 3403 |
| PspN4I | GGNNCC | 9 cut(s) | 357, 447, 462, 483, 1000, 2151, 2492, 2493, 2564 |
| PspOMI | GGGCCC | 1 cut(s) | 2490 |
| PspPI | GGNCC | 6 cut(s) | 518, 860, 2490, 2491, 2563, 2758 |
| PspPPI | RGGWCCY | 1 cut(s) | 2563 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2761 |
| PsuI | RGATCY | 3 cut(s) | 956, 2129, 2641 |
| PsyI | GACNNNGTC | 1 cut(s) | 2888 |
| PvuII | CAGCTG | 1 cut(s) | 3395 |
| RsaI | GTAC | 7 cut(s) | 1647, 1753, 1770, 1884, 2913, 3175, 3405 |
| RsaNI | GTAC | 7 cut(s) | 1646, 1752, 1769, 1883, 2912, 3174, 3404 |
| SacI | GAGCTC | 1 cut(s) | 597 |
| SapI | GCTCTTC | 1 cut(s) | 3255 |
| SaqAI | TTAA | 8 cut(s) | 687, 1833, 2070, 2321, 2384, 3141, 3183, 3270 |
| Sau96I | GGNCC | 6 cut(s) | 518, 860, 2490, 2491, 2563, 2758 |
| ScaI | AGTACT | 1 cut(s) | 1753 |
| SchI | GAGTC | 6 cut(s) | 284, 545, 582, 1468, 1666, 2879 |
| ScrFI | CCNGG | 4 cut(s) | 422, 700, 954, 1635 |
| SduI | GDGCHC | 3 cut(s) | 597, 2482, 2494 |
| SfaNI | GCATC | 9 cut(s) | 794, 2075, 2101, 2231, 2283, 2321, 2432, 2704, 3080 |
| SfcI | CTRYAG | 1 cut(s) | 1053 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 2547 |
| Sfr274I | CTCGAG | 1 cut(s) | 508 |
| SinI | GGWCC | 1 cut(s) | 2563 |
| SlaI | CTCGAG | 1 cut(s) | 508 |
| SmlI | CTYRAG | 4 cut(s) | 508, 1422, 1755, 2427 |
| SmoI | CTYRAG | 4 cut(s) | 508, 1422, 1755, 2427 |
| SphI | GCATGC | 1 cut(s) | 1856 |
| SseBI | AGGCCT | 3 cut(s) | 1114, 1198, 2550 |
| SsiI | CCGC | 7 cut(s) | 12, 173, 245, 458, 769, 983, 1808 |
| SstI | GAGCTC | 1 cut(s) | 597 |
| StuI | AGGCCT | 3 cut(s) | 1114, 1198, 2550 |
| StyD4I | CCNGG | 4 cut(s) | 420, 698, 952, 1633 |
| StyI | CCWWGG | 7 cut(s) | 364, 524, 1251, 2032, 2542, 2609, 2645 |
| TaaI | ACNGT | 7 cut(s) | 101, 253, 911, 1645, 2287, 2347, 2854 |
| TaiI | ACGT | 3 cut(s) | 2572, 2876, 3409 |
| TaqI | TCGA | 4 cut(s) | 509, 546, 2095, 2598 |
| TaqII | GACCGA | 1 cut(s) | 647 |
| TatI | WGTACW | 4 cut(s) | 1645, 1751, 1882, 3173 |
| TauI | GCSGC | 4 cut(s) | 14, 248, 772, 985 |
| Tru1I | TTAA | 8 cut(s) | 687, 1833, 2070, 2321, 2384, 3141, 3183, 3270 |
| Tru9I | TTAA | 8 cut(s) | 687, 1833, 2070, 2321, 2384, 3141, 3183, 3270 |
| TscAI | CASTG | 6 cut(s) | 561, 760, 1599, 1722, 2007, 2461 |
| TseFI | GTSAC | 1 cut(s) | 2261 |
| TseI | GCWGC | 6 cut(s) | 619, 622, 941, 1091, 3068, 3392 |
| Tsp45I | GTSAC | 1 cut(s) | 2261 |
| TspGWI | ACGGA | 6 cut(s) | 1415, 1625, 1851, 2570, 2688, 3311 |
| TspRI | CASTG | 6 cut(s) | 561, 760, 1599, 1722, 2007, 2461 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2888 |
| VpaK11BI | GGWCC | 1 cut(s) | 2563 |
| VspI | ATTAAT | 2 cut(s) | 2384, 3270 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 2367, 2724 |
| XapI | RAATTY | 1 cut(s) | 2555 |
| XceI | RCATGY | 1 cut(s) | 1856 |
| XhoI | CTCGAG | 1 cut(s) | 508 |
| XmaJI | CCTAGG | 1 cut(s) | 524 |
| XmnI | GAANNNNTTC | 3 cut(s) | 566, 1047, 3309 |
| ZrmI | AGTACT | 1 cut(s) | 1753 |
| Zsp2I | ATGCAT | 3 cut(s) | 2425, 3125, 3336 |