RLG00000024063

WD40 repeats

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0002231
Physical Location & Seq
Forward (+)
31375070 .. 31377017
1948 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024063

Sequence Viewer

Length: 912 bp
ATGAGATGTCAGTTTATTGCCATTGCTGCTCATCCCCCTGGATCTTCTTATCACAAGTTAGGTGAGCCACTTACTGGCAGAGGCGCCATTCAGATATGGTGTCTTCTAAATGCTAGTGTAAATGATGAAGATGTTCCTATAGGAGACAAACCAAAAGGAGGAAATAAAAGGAGTGGAGCCACAGAAAAATGCACTGAGCAAAAAAGGGGAAGACCCAGAAAGAAGCCATTAGAAGAATCTGTTGGCAAAGAGGCCACAGAAGAAAAACTGACTGGGCCAAAAAGGCCTAGAGGAAGACCTAGAAAGAAGCCAATAGAAGAATCTATTGACAAAGAGGCCAAAGAAGAGAAATCAACTCAACCAAAGAGGCCTAGAGGAAGACCCAGAAATAAATCAATAGAAGAATCTGTTGACAACTTGGATGGGAGAACCAATTGCGATGAGGTTCTTGCTATTGATTTTCCAAAGGAATCATCTGAGTTGCATTCTATGGATTGTCTTCCTGCAAATACTCAAGGAAATTTTGTACAAGAAGATCATGACAAAAAGCAACTAAGGTATGGGCAGAGTCAACCGAAGAAGCCTAGAGGAAGACCCAGAAAGAAGCCAATAAAAGAGCCTCTTGACAATTTAGATGGGGGCAGCAACAATAATTTTGAGGTTCTTGCAATTGAATACCAAAAGGAATCACTGGAGTTGCATTCTACGGTTTGTCCTCTTGCAAATACTCAAGTGGACGCTGTGCAAGAAGAAACAAGTTACAAGCAGACTCGATCAAAGAGGCCTAGAGGAATACATGGAAAGAAGCCAATAGAAGAATCTGTTGAAAACTTGGACGACAGCAGCAAAACGGGTGAGGCTCTTGATGATCAATATCCAATTGGAGTTGGAGGGCATGGATTGCGATCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AT_hook

Protein Analysis

304

Amino Acids

33.78

Weight (kDa)

8.86

Isoelectric Point (pI)

51.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 83
AccB7I CCANNNNNTGG 1 cut(s) 74
AclWI GGATC 2 cut(s) 49, 900
AcsI RAATTY 1 cut(s) 520
AcyI GRCGYC 1 cut(s) 84
AfaI GTAC 1 cut(s) 528
AfiI CCNNNNNNNGG 2 cut(s) 74, 158
AgsI TTSAA 2 cut(s) 674, 827
AjnI CCWGG 1 cut(s) 37
AjuI GAANNNNNNNTTGG 2 cut(s) 225, 257
Alw26I GTCTC 1 cut(s) 138
AlwI GGATC 2 cut(s) 49, 900
AoxI GGCC 6 cut(s) 252, 275, 284, 336, 368, 782
ApeKI GCWGC 3 cut(s) 26, 642, 843
ApoI RAATTY 1 cut(s) 520
Asp700I GAANNNNTTC 1 cut(s) 132
AspLEI GCGC 1 cut(s) 86
AspS9I GGNCC 1 cut(s) 275
AsuHPI GGTGA 2 cut(s) 74, 866
BanI GGYRCC 1 cut(s) 83
BbsI GAAGAC 6 cut(s) 95, 217, 301, 385, 491, 598
BbvI GCAGC 3 cut(s) 13, 654, 855
BccI CCATC 2 cut(s) 416, 629
BciT130I CCWGG 1 cut(s) 39
BclI TGATCA 1 cut(s) 868
BcoDI GTCTC 1 cut(s) 138
BfaI CTAG 6 cut(s) 114, 288, 300, 372, 585, 786
BfmI CTRYAG 1 cut(s) 138
BfoI RGCGCY 1 cut(s) 87
BglI GCCNNNNNGGC 1 cut(s) 283
BisI GCNGC 3 cut(s) 27, 643, 844
BlsI GCNGC 3 cut(s) 28, 644, 845
Bme1390I CCNGG 1 cut(s) 39
BmgT120I GGNCC 1 cut(s) 275
BmiI GGNNCC 2 cut(s) 85, 178
BmrFI CCNGG 1 cut(s) 39
BmrI ACTGGG 1 cut(s) 282
BmuI ACTGGG 1 cut(s) 282
BpiI GAAGAC 6 cut(s) 95, 217, 301, 385, 491, 598
BpmI CTGGAG 1 cut(s) 713
BpuEI CTTGAG 2 cut(s) 498, 714
BsaBI GATNNNNATC 2 cut(s) 873, 904
BsaHI GRCGYC 1 cut(s) 84
BsaJI CCNNGG 1 cut(s) 37
Bsc4I CCNNNNNNNGG 2 cut(s) 74, 158
Bse1I ACTGG 3 cut(s) 79, 277, 696
Bse3DI GCAATG 1 cut(s) 21
Bse8I GATNNNNATC 2 cut(s) 873, 904
BseBI CCWGG 1 cut(s) 39
BseDI CCNNGG 1 cut(s) 37
BseGI GGATG 2 cut(s) 31, 427
BseJI GATNNNNATC 2 cut(s) 873, 904
BseLI CCNNNNNNNGG 2 cut(s) 74, 158
BseMI GCAATG 1 cut(s) 21
BseMII CTCAG 2 cut(s) 186, 468
BseNI ACTGG 3 cut(s) 79, 277, 696
BseXI GCAGC 3 cut(s) 13, 654, 855
BshFI GGCC 6 cut(s) 254, 277, 286, 338, 370, 784
BshNI GGYRCC 1 cut(s) 83
BslI CCNNNNNNNGG 2 cut(s) 74, 158
BsmAI GTCTC 1 cut(s) 138
BsmI GAATGC 2 cut(s) 484, 700
BsnI GGCC 6 cut(s) 254, 277, 286, 338, 370, 784
Bsp1407I TGTACA 1 cut(s) 526
Bsp143I GATC 5 cut(s) 41, 535, 773, 868, 905
BspANI GGCC 6 cut(s) 254, 277, 286, 338, 370, 784
BspCNI CTCAG 2 cut(s) 187, 469
BspHI TCATGA 1 cut(s) 538
BspLI GGNNCC 2 cut(s) 85, 178
BspPI GGATC 2 cut(s) 49, 900
BspT107I GGYRCC 1 cut(s) 83
BsrDI GCAATG 1 cut(s) 21
BsrGI TGTACA 1 cut(s) 526
BsrI ACTGG 3 cut(s) 79, 277, 696
BssECI CCNNGG 1 cut(s) 37
BssMI GATC 5 cut(s) 41, 535, 773, 868, 905
BssNI GRCGYC 1 cut(s) 84
Bst2UI CCWGG 1 cut(s) 39
Bst4CI ACNGT 1 cut(s) 709
Bst6I CTCTTC 1 cut(s) 339
BstACI GRCGYC 1 cut(s) 84
BstAPI GCANNNNNTGC 1 cut(s) 901
BstAUI TGTACA 1 cut(s) 526
BstDEI CTNAG 3 cut(s) 195, 477, 554
BstF5I GGATG 2 cut(s) 31, 427
BstH2I RGCGCY 1 cut(s) 87
BstHHI GCGC 1 cut(s) 86
BstKTI GATC 5 cut(s) 44, 538, 776, 871, 908
BstMAI GTCTC 1 cut(s) 138
BstMBI GATC 5 cut(s) 41, 535, 773, 868, 905
BstMWI GCNNNNNNNGC 3 cut(s) 26, 283, 901
BstNI CCWGG 1 cut(s) 39
BstSCI CCNGG 1 cut(s) 37
BstSFI CTRYAG 1 cut(s) 138
BstV1I GCAGC 3 cut(s) 13, 654, 855
BstV2I GAAGAC 6 cut(s) 95, 217, 301, 385, 491, 598
BstX2I RGATCY 1 cut(s) 41
BstYI RGATCY 1 cut(s) 41
BsuRI GGCC 6 cut(s) 254, 277, 286, 338, 370, 784
BtgZI GCGATG 1 cut(s) 453
BtsCI GGATG 2 cut(s) 31, 427
BtsIMutI CAGTG 2 cut(s) 192, 689
CciI TCATGA 1 cut(s) 538
CfoI GCGC 1 cut(s) 86
Cfr13I GGNCC 1 cut(s) 275
CseI GACGC 1 cut(s) 746
Csp6I GTAC 1 cut(s) 527
CviAII CATG 3 cut(s) 539, 797, 896
CviQI GTAC 1 cut(s) 527
DdeI CTNAG 3 cut(s) 195, 477, 554
DinI GGCGCC 1 cut(s) 85
DpnI GATC 5 cut(s) 43, 537, 775, 870, 907
DpnII GATC 5 cut(s) 41, 535, 773, 868, 905
Eam1104I CTCTTC 1 cut(s) 339
EarI CTCTTC 1 cut(s) 339
Eco147I AGGCCT 3 cut(s) 286, 370, 784
EcoRII CCWGG 1 cut(s) 37
EgeI GGCGCC 1 cut(s) 85
EheI GGCGCC 1 cut(s) 85
FaeI CATG 3 cut(s) 542, 800, 899
FaiI YATR 7 cut(s) 97, 140, 491, 540, 561, 798, 897
FalI AAGNNNNNCTT 2 cut(s) 606, 638
FatI CATG 3 cut(s) 538, 796, 895
FbaI TGATCA 1 cut(s) 868
Fnu4HI GCNGC 3 cut(s) 27, 643, 844
FokI GGATG 2 cut(s) 18, 434
Fsp4HI GCNGC 3 cut(s) 27, 643, 844
FspBI CTAG 6 cut(s) 114, 288, 300, 372, 585, 786
GlaI GCGC 1 cut(s) 85
GluI GCNGC 3 cut(s) 27, 643, 844
GsuI CTGGAG 1 cut(s) 713
HaeII RGCGCY 1 cut(s) 87
HaeIII GGCC 6 cut(s) 254, 277, 286, 338, 370, 784
HgaI GACGC 1 cut(s) 746
HhaI GCGC 1 cut(s) 86
Hin1I GRCGYC 1 cut(s) 84
Hin1II CATG 3 cut(s) 542, 800, 899
Hin6I GCGC 1 cut(s) 84
HinP1I GCGC 1 cut(s) 84
HincII GTYRAC 2 cut(s) 412, 572
HindII GTYRAC 2 cut(s) 412, 572
HinfI GANTC 8 cut(s) 236, 320, 404, 470, 568, 686, 769, 818
HphI GGTGA 2 cut(s) 74, 866
Hpy166II GTNNAC 3 cut(s) 412, 572, 736
Hpy188I TCNGA 2 cut(s) 93, 478
Hpy188III TCNNGA 4 cut(s) 539, 623, 863, 909
Hpy8I GTNNAC 3 cut(s) 412, 572, 736
HpyCH4III ACNGT 1 cut(s) 709
HpyCH4V TGCA 7 cut(s) 192, 484, 506, 668, 700, 722, 745
HpyF10VI GCNNNNNNNGC 3 cut(s) 26, 283, 901
HpyF3I CTNAG 3 cut(s) 195, 477, 554
Hsp92I GRCGYC 1 cut(s) 84
Hsp92II CATG 3 cut(s) 542, 800, 899
HspAI GCGC 1 cut(s) 84
KasI GGCGCC 1 cut(s) 83
Ksp22I TGATCA 1 cut(s) 868
Kzo9I GATC 5 cut(s) 41, 535, 773, 868, 905
LmnI GCTCC 1 cut(s) 176
LpnPI CCDG 9 cut(s) 24, 51, 60, 229, 258, 397, 516, 610, 677
Lsp1109I GCAGC 3 cut(s) 13, 654, 855
MaeI CTAG 6 cut(s) 114, 288, 300, 372, 585, 786
MaeIII GTNAC 1 cut(s) 758
MalI GATC 5 cut(s) 43, 537, 775, 870, 907
MboI GATC 5 cut(s) 41, 535, 773, 868, 905
MfeI CAATTG 3 cut(s) 433, 669, 879
MflI RGATCY 1 cut(s) 41
MluCI AATT 6 cut(s) 433, 520, 628, 652, 669, 879
Mly113I GGCGCC 1 cut(s) 84
MlyI GAGTC 2 cut(s) 577, 763
MmeI TCCRAC 1 cut(s) 868
MroXI GAANNNNTTC 1 cut(s) 132
MspR9I CCNGG 1 cut(s) 39
MunI CAATTG 3 cut(s) 433, 669, 879
Mva1269I GAATGC 2 cut(s) 484, 700
MvaI CCWGG 1 cut(s) 39
MwoI GCNNNNNNNGC 3 cut(s) 26, 283, 901
NarI GGCGCC 1 cut(s) 84
NdeII GATC 5 cut(s) 41, 535, 773, 868, 905
NlaIII CATG 3 cut(s) 542, 800, 899
NlaIV GGNNCC 2 cut(s) 85, 178
PagI TCATGA 1 cut(s) 538
PceI AGGCCT 3 cut(s) 286, 370, 784
PctI GAATGC 2 cut(s) 484, 700
PdmI GAANNNNTTC 1 cut(s) 132
PfeI GAWTC 6 cut(s) 236, 320, 404, 470, 686, 818
PflMI CCANNNNNTGG 1 cut(s) 74
PkrI GCNGC 3 cut(s) 28, 644, 845
PleI GAGTC 2 cut(s) 576, 763
PluTI GGCGCC 1 cut(s) 87
PpsI GAGTC 2 cut(s) 576, 763
Psp6I CCWGG 1 cut(s) 37
PspGI CCWGG 1 cut(s) 37
PspN4I GGNNCC 2 cut(s) 85, 178
PspPI GGNCC 1 cut(s) 275
PsuI RGATCY 1 cut(s) 41
RsaI GTAC 1 cut(s) 528
RsaNI GTAC 1 cut(s) 527
SatI GCNGC 3 cut(s) 27, 643, 844
Sau3AI GATC 5 cut(s) 41, 535, 773, 868, 905
Sau96I GGNCC 1 cut(s) 275
SchI GAGTC 2 cut(s) 577, 763
ScrFI CCNGG 1 cut(s) 39
SetI ASST 5 cut(s) 64, 301, 447, 560, 663
SfcI CTRYAG 1 cut(s) 138
SfiI GGCCNNNNNGGCC 1 cut(s) 283
SfoI GGCGCC 1 cut(s) 85
SmlI CTYRAG 2 cut(s) 513, 729
SmoI CTYRAG 2 cut(s) 513, 729
Sse9I AATT 6 cut(s) 433, 520, 628, 652, 669, 879
SseBI AGGCCT 3 cut(s) 286, 370, 784
SspDI GGCGCC 1 cut(s) 83
SspMI CTAG 6 cut(s) 114, 288, 300, 372, 585, 786
StuI AGGCCT 3 cut(s) 286, 370, 784
StyD4I CCNGG 1 cut(s) 37
TaaI ACNGT 1 cut(s) 709
TaqI TCGA 1 cut(s) 772
TasI AATT 6 cut(s) 433, 520, 628, 652, 669, 879
TatI WGTACW 1 cut(s) 526
TfiI GAWTC 6 cut(s) 236, 320, 404, 470, 686, 818
TscAI CASTG 2 cut(s) 199, 696
TseI GCWGC 3 cut(s) 26, 642, 843
TspDTI ATGAA 1 cut(s) 141
TspRI CASTG 2 cut(s) 199, 696
Van91I CCANNNNNTGG 1 cut(s) 74
XapI RAATTY 1 cut(s) 520
XmnI GAANNNNTTC 1 cut(s) 132
XspI CTAG 6 cut(s) 114, 288, 300, 372, 585, 786
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.