Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0002231

Physical Location & Seq

Genomic Coordinates Reverse (-)

16829237 .. 16838785

Gene Structure 9549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG179900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3351 bp

ATGAATGAAGAGGAAGTGGAACCTCCACTTGGGGTTCTATTGGGTCGAAAGCGCGGGAAAACAAAGTCGGCCAAGAGAGCAAGCCAAGCAACACCGCACAGCACAGAGCCACTTCAAATCATCGAACCAGAGCCCGAGCCCGTCCCAATCGATGCGGAGCCAGTTGCAATTGAGCCGGAGAACTCAAGGAATGGCGCTAGGGGGGTTAGTGTTTCGATGTTCGATGACTCGGTGGAGAATCACTTCAGATTCATGCACACGATTTCCGAGCTCTGTGGCGACGCCGAAGGTGAGCCACTCCCGGAGAGCGACATTCAACGCTTATCGTCCTCCACCACTTTCCTGAGGGAATGGGCAGATTTTAAGTATGAACCTAGAGATGTTCGATTCGCTTGCGAAGCAGAAAGCTCTGATGGGGAGGATGTTGTCAGTAGCATAAACTTGCGGCAGTTTTCTTCCGCAACTGTTCCACAGAACGAGGCGGGGGACACATCTTCTCCAGAGTTGAGCCAAGACTATGTGATGTATGTTGGAGGGTCTGTTTGGGCATTGGATTGGTGTCCTAGAGTTCATGAAAGTCACGACCATCATGCAAAGTGCGAGTTTATTGCCATTGCTGCTCATCCCCCTGGATCTTCTTATCACAAGTTAGGTGAGCCACTTACTGGCAGAGGTGCCATTCAGATATGGTGTCTTCTAAATGCTAGTGTAAATGATGAAGGTGTTCCTATAGGAGACAAACCAAAAGGAGGAAATAAAAGGAATGGAGCCACAGAAAAATGCACTGAACAAAAAAGGGGAAGACCCAGAAAGAAGCCATTAGAAGAATCTGTTGGCAAAGAGGCCACAGAAGAAAAACTGTCCGAGTCAAAAAGGCCTAGAGGAAGACCTAGAAAGAAGCCAATAGAAGAATCTATTGACAAAGAGGCCAAAGAAGAGAAATCAACTCAACCAAAGAGGCCTAGAGGAAGACCTAGAAATAAATCAATAGAAGAATCTGTTGACAACTTGGATGGGAGAACCAATTGTGATGAGGTTCTTGCTATTGATTATCCAAAGGAATCATCTGAGTTGCATTCTATGGATTATCTTCCTGCAAATACTCAAGCAAATTTTGTACAAGAAGATCATGACAAAAAGCAACTAAGTTATGGGCAGAGTCAACCGAAGAAGCCTAGAGGAAGACCCAGAAAGAAGCCAATAAAAGAGCCTGTTGACAATTTAGATGGGGGCAGCAACAATAATTTTGAGGTTCTTGCAATTGAATACCAAAAGGAATCACTGAAGTTGCATTCTACGGATTGTCTTCTTGCAAATACTCAAGTGGACGCTGTACAAGAAGAAACAAGTTACAAGCAGACTCGATCAAAGAGGCCTAGAGGAATACATGGAAAGAAGCCAATAGAAGAATCTGTTGAAAACTTGGATGACAGCAGCAGTACGGGTGAGGCTCTTGATGATCAATATCCAAAGGAACTATTGGAGTTGGAGGGCATGGATTGCGCTCCTGAAAGTACTCAAGGAGATAAGGTACAAGATGATAGTGGTAAGAAAAGAAAAACGTATAAAAAGACTCGAGCAAAGATTCCTAGAGAAAAACCTGGAGAGAAGCCAGTAGAATATTCTGTTGATAACTTGCATGGGAGCAGCCATTATGCGGAGGCTCTTGGAGTCCAATATCTCAAGGAAACATCAGAGTTGCATGCTATGGACTGTGTTCCTGCATTTACTCAGGCGCATGATGTACAAGAAGCTCTTAATGAAAAACTTGAAAGTTCCGGACTGGGTCCTCAAACAAATAATAATGTTTCAAATAATGGTTATACTGAAATTGGCTCAATTAGGTGTTCAGTTCCAAAGGATGTAGCATTGCCAAGAATCATATTCTGCCTAGCTCACCATGGAAAGGTTGCTTGGGATGTGAAATGGCGTCCTCTTAATGAACATGATTCCAGATGCAAGCATCGAATGGGCTATCTTGCTGTTCTGTTGGGGAACGGGTCACTGGAAGTGTGGGAGGTTCCTGTTCCTCGTGCAATTGAAGTTATTTATTCTTCTTCATCTGGAGAGGGCACTGATGCTCGCTTTGTAAAATTGGCACCAGTATTTAGATGCTCAATGTTGAAGTCTGGTGACAAAAAAAGCATCCCTCTTACTGTGGAATGGTCAGCTTCACCACCTCACGATTACTTAATTGCCGGATGCCATGATGGAACTGTTGCTATGTGGAAGTTTTCTGCTGGTAATGTATCTCAAGATACAAGGCCTTTACTTTGTTTCAGCGCAGATACAAATCCTATTAGGGCGCTTTCTTGGGCCCCAGCTCAAAGCAATTCAGACAATGCAAATGTTATAGCTACCGCTGGACATGGAGGCCTAAAATTTTGGGACCTACATGATCCATTCCGTCCCTTGTGGGACATCGATCATATACCAAGGTTCATATATAGTCTGGATTGGATTCCAGATCCAAGGTGTGTTCTTCTCTCCTTTGATGATGGAACAATGAGACTTCTCAGCTTGACAAAGGCTGCCTCTGATGCCCCTGTAACAGGAAAACCCTTTGCTGGAACAAAACAACAGGGCCTGCACAATCTTGGTTGTTTGCCTTTTGCTATCTGGAGTGTTCAAGTATCAAGACTAACAGGTATGGTTGCATATTGTGGTGCAGATGGAACTGTTCTGCGCTTCCAACTTACGTCCAATGCTGTGGAGAAAGATGCTACACGAAACCGGGCCCCACATTTTCTGTGCGTGTCACTAACTGAAGAGGACTCTGTTGTGATCATCAATACCCCAGTACCACAGAATCCTTTCCCATTGAAAACATCTCGTAAAGCTGAGCCAAACAAAGTGAAGAGAGAACATGATAAGATGACAACTACATCACAAGATCAAGTTTTAGCTCTTTGTTATGGTGATGATCCGGGTATTGAATTAGAATCTGGGAAAGAAGCAGCATCTCTTAGAAGCAAAACGCTCAAATCTGGGGATGACCAAGCATTAGTATGCATGGATCAAGAGCCATTTAATACCCAAGACGAAGAAATTGGAGAAAAGGGTTCATCTCTTAAAGGCATTGTAAAACAGAAATCCAAGTCTGGTAAGAAAAATACAGAGGATGAACAAGAACTGGAAGGCAGAGATGAAGAGCTGATTAATACGCAGAGACAAAAAACTGGGACTGAGTATGAAGTTTTTCCTTCCAAGCAAGTAGCAATGCACCGAGTGAGATGGAACATGAACAAGGGTAGTGAGAGATGGTTATGCTATGGAGGGGCAGCTGGAATAGTACGTTGTCAGGAGATTGTTTTGTCTGACATTGATATGAAATGGGCAAGGAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AT_hook

Protein Analysis

1116

Amino Acids

124.03

Weight (kDa)

5.85

Isoelectric Point (pI)

44.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002231)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19485 AT1G19485
fragaria_vesca	FvH4_6g18260 FvH4_6g18260 FvH4_6g18260 FvH4_6g18260 FvH4_7g02500
malus_domestica	MD09G1081300.v1.1 MD12G1022600.v1.1
prunus_persica	Prupe.7G114200_v2.0.a1 Prupe.7G114200_v2.0.a1
pyrus_communis	pycom09g00800 pycom12g02090
rosa_chinensis	RchiOBHm_Chr3g0472691 RchiOBHm_Chr3g0472701 RchiOBHm_Chr4g0409331
rosa_laevigata	RLG00000008568 RLG00000016132 RLG00000024063
rosa_multiflora	Rmu_co8285783.1_g000001 Rmu_sc0001616.1_g000052 Rmu_sc0001616.1_g000057 Rmu_sc0001851.1_g000016 Rmu_sc0003510.1_g000010 Rmu_sc0003510.1_g000011 Rmu_sc0003510.1_g000012 Rmu_sc0034965.1_g000001
rosa_roxburghii	Rroxscaffold_5G00353840 Rroxscaffold_6G00408710
rosa_rugosa	Rorug03G0127200 Rorug04G0092400 Rorug04G0092500
rosa_samantha	Rh3AG179900 Rh3BG205800 Rh3CG202900 Rh3DG169900 Rh4AG155600 Rh4BG153800 Rh4CG164600 Rh4DG148500
rosa_wichuraiana	Rw3G016270 Rw4G012710 Rw4G012730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	674, 2098
AccB7I	CCANNNNNTGG	1 cut(s)	665
AccII	CGCG	1 cut(s)	54
AccIII	TCCGGA	1 cut(s)	1778
AciI	CCGC	8 cut(s)	54, 95, 155, 445, 459, 482, 1658, 2361
AclWI	GGATC	5 cut(s)	640, 2393, 2462, 2918, 3024
AcoI	YGGCCR	1 cut(s)	69
AcsI	RAATTY	2 cut(s)	1111, 2381
AcuI	CTGAAG	3 cut(s)	229, 1304, 2787
AcyI	GRCGYC	2 cut(s)	282, 1930
AdeI	CACNNNGTG	1 cut(s)	3229
AfaI	GTAC	8 cut(s)	1119, 1335, 1441, 1516, 1533, 1746, 2802, 3294
AfiI	CCNNNNNNNGG	7 cut(s)	29, 665, 749, 1657, 1906, 2552, 2567
AjnI	CCWGG	2 cut(s)	628, 1600
AjuI	GAANNNNNNNTTGG	6 cut(s)	12, 44, 816, 848, 1897, 1929
Alw21I	GWGCWC	1 cut(s)	273
Alw26I	GTCTC	3 cut(s)	729, 2503, 3163
AlwI	GGATC	5 cut(s)	640, 2393, 2462, 2918, 3024
AlwNI	CAGNNNCTG	1 cut(s)	2587
Ama87I	CYCGRG	2 cut(s)	134, 1575
Aor13HI	TCCGGA	1 cut(s)	1778
ApaI	GGGCCC	2 cut(s)	2320, 2740
ApeKI	GCWGC	7 cut(s)	617, 1233, 1434, 1647, 2531, 2957, 3281
ApoI	RAATTY	2 cut(s)	1111, 2381
AseI	ATTAAT	1 cut(s)	3159
Asp700I	GAANNNNTTC	4 cut(s)	242, 723, 2813, 3198
AspLEI	GCGC	7 cut(s)	54, 197, 1505, 1738, 2285, 2308, 2688
AspS9I	GGNCC	7 cut(s)	1787, 2316, 2317, 2389, 2584, 2736, 2737
AsuC2I	CCSGG	3 cut(s)	302, 2735, 2928
AsuHPI	GGTGA	7 cut(s)	302, 665, 1457, 1889, 2144, 2166, 2930
AvaI	CYCGRG	2 cut(s)	134, 1575
AvaII	GGWCC	2 cut(s)	1787, 2389
AxyI	CCTNAGG	1 cut(s)	344
BaeGI	GKGCMC	3 cut(s)	2075, 2320, 2740
BaeI	ACNNNNGTAYC	2 cut(s)	2784, 2817
BanI	GGYRCC	2 cut(s)	674, 2098
BanII	GRGCYC	5 cut(s)	135, 141, 273, 2320, 2740
BauI	CACGAG	1 cut(s)	2031
BbsI	GAAGAC	6 cut(s)	686, 808, 892, 976, 1189, 1298
Bbv12I	GWGCWC	1 cut(s)	273
BbvI	GCAGC	7 cut(s)	604, 1245, 1446, 1659, 2518, 2969, 3293
BccI	CCATC	9 cut(s)	407, 594, 1007, 1220, 2204, 2492, 2666, 3228, 3255
BcgI	CGANNNNNNTGC	6 cut(s)	375, 409, 572, 590, 606, 624
BciT130I	CCWGG	2 cut(s)	630, 1602
BclI	TGATCA	2 cut(s)	1459, 2784
BcnI	CCSGG	3 cut(s)	302, 2735, 2928
BcoDI	GTCTC	3 cut(s)	729, 2503, 3163
BfmI	CTRYAG	1 cut(s)	729
BfoI	RGCGCY	2 cut(s)	198, 2309
BisI	GCNGC	8 cut(s)	446, 618, 1234, 1435, 1648, 2532, 2958, 3282
BlpI	GCTNAGC	1 cut(s)	2841
BlsI	GCNGC	8 cut(s)	447, 619, 1235, 1436, 1649, 2533, 2959, 3283
BmcAI	AGTACT	1 cut(s)	1516
Bme1390I	CCNGG	5 cut(s)	302, 630, 1602, 2735, 2928
Bme18I	GGWCC	2 cut(s)	1787, 2389
BmeT110I	CYCGRG	2 cut(s)	134, 1575
BmgT120I	GGNCC	7 cut(s)	1787, 2316, 2317, 2389, 2584, 2736, 2737
BmrFI	CCNGG	5 cut(s)	302, 630, 1602, 2735, 2928
BmrI	ACTGGG	3 cut(s)	1793, 2792, 3189
BmuI	ACTGGG	3 cut(s)	1793, 2792, 3189
BpiI	GAAGAC	6 cut(s)	686, 808, 892, 976, 1189, 1298
BpmI	CTGGAG	4 cut(s)	483, 1623, 2085, 2641
Bpu1102I	GCTNAGC	1 cut(s)	2841
BpuEI	CTTGAG	6 cut(s)	169, 1089, 1305, 1503, 1667, 2238
BpuMI	CCSGG	3 cut(s)	302, 2735, 2928
Bsa29I	ATCGAT	2 cut(s)	150, 2424
BsaBI	GATNNNNATC	2 cut(s)	1464, 2292
BsaHI	GRCGYC	2 cut(s)	282, 1930
BsaJI	CCNNGG	4 cut(s)	628, 1900, 2435, 2471
BsaWI	WCCGGW	1 cut(s)	1778
BsaXI	ACNNNNNCTCC	6 cut(s)	481, 511, 525, 555, 1515, 1545
Bsc4I	CCNNNNNNNGG	7 cut(s)	29, 665, 749, 1657, 1906, 2552, 2567
Bse1I	ACTGG	9 cut(s)	161, 670, 1613, 1788, 2010, 2102, 2798, 3138, 3184
Bse21I	CCTNAGG	1 cut(s)	344
Bse3DI	GCAATG	3 cut(s)	612, 1868, 3225
Bse8I	GATNNNNATC	2 cut(s)	1464, 2292
BseAI	TCCGGA	1 cut(s)	1778
BseBI	CCWGG	2 cut(s)	630, 1602
BseCI	ATCGAT	2 cut(s)	150, 2424
BseDI	CCNNGG	4 cut(s)	628, 1900, 2435, 2471
BseJI	GATNNNNATC	2 cut(s)	1464, 2292
BseLI	CCNNNNNNNGG	7 cut(s)	29, 665, 749, 1657, 1906, 2552, 2567
BseMI	GCAATG	3 cut(s)	612, 1868, 3225
BseMII	CTCAG	6 cut(s)	335, 1059, 1745, 2530, 2832, 3177
BseNI	ACTGG	9 cut(s)	161, 670, 1613, 1788, 2010, 2102, 2798, 3138, 3184
BseSI	GKGCMC	3 cut(s)	2075, 2320, 2740
BseXI	GCAGC	7 cut(s)	604, 1245, 1446, 1659, 2518, 2969, 3293
BseYI	CCCAGC	1 cut(s)	2320
BsgI	GTGCAG	2 cut(s)	2573, 2688
Bsh1236I	CGCG	1 cut(s)	54
BshNI	GGYRCC	2 cut(s)	674, 2098
BshVI	ATCGAT	2 cut(s)	150, 2424
BsiHKAI	GWGCWC	1 cut(s)	273
BsiHKCI	CYCGRG	2 cut(s)	134, 1575
BsiSI	CCGG	6 cut(s)	176, 302, 1779, 2199, 2734, 2927
BslFI	GGGAC	6 cut(s)	128, 500, 2394, 2402, 2432, 3196
BslI	CCNNNNNNNGG	7 cut(s)	29, 665, 749, 1657, 1906, 2552, 2567
BsmAI	GTCTC	3 cut(s)	729, 2503, 3163
BsmFI	GGGAC	6 cut(s)	128, 500, 2394, 2402, 2432, 3196
BsmI	GAATGC	2 cut(s)	1075, 1291
BsoBI	CYCGRG	2 cut(s)	134, 1575
Bsp120I	GGGCCC	2 cut(s)	2316, 2736
Bsp1286I	GDGCHC	6 cut(s)	135, 141, 273, 2075, 2320, 2740
Bsp13I	TCCGGA	1 cut(s)	1778
Bsp1407I	TGTACA	3 cut(s)	1117, 1333, 1744
Bsp1720I	GCTNAGC	1 cut(s)	2841
Bsp19I	CCATGG	1 cut(s)	1900
BspACI	CCGC	8 cut(s)	54, 95, 155, 445, 459, 482, 1658, 2361
BspCNI	CTCAG	6 cut(s)	336, 1060, 1744, 2529, 2833, 3178
BspDI	ATCGAT	2 cut(s)	150, 2424
BspEI	TCCGGA	1 cut(s)	1778
BspFNI	CGCG	1 cut(s)	54
BspHI	TCATGA	2 cut(s)	571, 1129
BspPI	GGATC	5 cut(s)	640, 2393, 2462, 2918, 3024
BspQI	GCTCTTC	1 cut(s)	3144
BspT107I	GGYRCC	2 cut(s)	674, 2098
BsrDI	GCAATG	3 cut(s)	612, 1868, 3225
BsrGI	TGTACA	3 cut(s)	1117, 1333, 1744
BsrI	ACTGG	9 cut(s)	161, 670, 1613, 1788, 2010, 2102, 2798, 3138, 3184
BssECI	CCNNGG	4 cut(s)	628, 1900, 2435, 2471
BssNI	GRCGYC	2 cut(s)	282, 1930
BssSI	CACGAG	1 cut(s)	2031
BssT1I	CCWWGG	3 cut(s)	1900, 2435, 2471
Bst2BI	CACGAG	1 cut(s)	2031
Bst2UI	CCWGG	2 cut(s)	630, 1602
Bst4CI	ACNGT	6 cut(s)	466, 861, 1715, 2158, 2218, 2680
Bst6I	CTCTTC	5 cut(s)	3, 930, 2763, 2852, 3144
BstACI	GRCGYC	2 cut(s)	282, 1930
BstAPI	GCANNNNNTGC	1 cut(s)	1500
BstAUI	TGTACA	3 cut(s)	1117, 1333, 1744
BstC8I	GCNNGC	6 cut(s)	82, 394, 1704, 1961, 2083, 2588
BstDEI	CTNAG	8 cut(s)	344, 1068, 1145, 1731, 2516, 2841, 2966, 3186
BstDSI	CCRYGG	1 cut(s)	1900
BstENI	CCTNNNNNAGG	1 cut(s)	2550
BstFNI	CGCG	1 cut(s)	54
BstH2I	RGCGCY	2 cut(s)	198, 2309
BstHHI	GCGC	7 cut(s)	54, 197, 1505, 1738, 2285, 2308, 2688
BstMAI	GTCTC	3 cut(s)	729, 2503, 3163
BstMWI	GCNNNNNNNGC	6 cut(s)	77, 86, 398, 617, 1500, 2540
BstNI	CCWGG	2 cut(s)	630, 1602
BstNSI	RCATGY	1 cut(s)	1706
BstSCI	CCNGG	5 cut(s)	300, 628, 1600, 2733, 2926
BstSFI	CTRYAG	1 cut(s)	729
BstSLI	GKGCMC	3 cut(s)	2075, 2320, 2740
BstUI	CGCG	1 cut(s)	54
BstV1I	GCAGC	7 cut(s)	604, 1245, 1446, 1659, 2518, 2969, 3293
BstV2I	GAAGAC	6 cut(s)	686, 808, 892, 976, 1189, 1298
BstX2I	RGATCY	2 cut(s)	632, 2467
BstXI	CCANNNNNNTGG	1 cut(s)	2710
BstYI	RGATCY	2 cut(s)	632, 2467
Bsu15I	ATCGAT	2 cut(s)	150, 2424
Bsu36I	CCTNAGG	1 cut(s)	344
BsuTUI	ATCGAT	2 cut(s)	150, 2424
BtgI	CCRYGG	1 cut(s)	1900
BtsIMutI	CAGTG	4 cut(s)	783, 1280, 2003, 2073
Cac8I	GCNNGC	6 cut(s)	82, 394, 1704, 1961, 2083, 2588
CaiI	CAGNNNCTG	1 cut(s)	2587
CciI	TCATGA	2 cut(s)	571, 1129
CfoI	GCGC	7 cut(s)	54, 197, 1505, 1738, 2285, 2308, 2688
Cfr13I	GGNCC	7 cut(s)	1787, 2316, 2317, 2389, 2584, 2736, 2737
ClaI	ATCGAT	2 cut(s)	150, 2424
CseI	GACGC	3 cut(s)	290, 1337, 1919
Csp6I	GTAC	8 cut(s)	1118, 1334, 1440, 1515, 1532, 1745, 2801, 3293
CviQI	GTAC	8 cut(s)	1118, 1334, 1440, 1515, 1532, 1745, 2801, 3293
DdeI	CTNAG	8 cut(s)	344, 1068, 1145, 1731, 2516, 2841, 2966, 3186
DraIII	CACNNNGTG	1 cut(s)	3229
EaeI	YGGCCR	1 cut(s)	69
Eam1104I	CTCTTC	5 cut(s)	3, 930, 2763, 2852, 3144
EarI	CTCTTC	5 cut(s)	3, 930, 2763, 2852, 3144
Ecl136II	GAGCTC	1 cut(s)	271
Eco130I	CCWWGG	3 cut(s)	1900, 2435, 2471
Eco147I	AGGCCT	5 cut(s)	877, 961, 1375, 2266, 2376
Eco24I	GRGCYC	5 cut(s)	135, 141, 273, 2320, 2740
Eco47I	GGWCC	2 cut(s)	1787, 2389
Eco53kI	GAGCTC	1 cut(s)	271
Eco57I	CTGAAG	3 cut(s)	229, 1304, 2787
Eco81I	CCTNAGG	1 cut(s)	344
Eco88I	CYCGRG	2 cut(s)	134, 1575
EcoICRI	GAGCTC	1 cut(s)	271
EcoNI	CCTNNNNNAGG	1 cut(s)	2550
EcoO109I	RGGNCCY	5 cut(s)	1787, 2317, 2389, 2584, 2737
EcoRII	CCWGG	2 cut(s)	628, 1600
EcoT14I	CCWWGG	3 cut(s)	1900, 2435, 2471
EcoT22I	ATGCAT	1 cut(s)	3014
EcoT38I	GRGCYC	5 cut(s)	135, 141, 273, 2320, 2740
ErhI	CCWWGG	3 cut(s)	1900, 2435, 2471
FalI	AAGNNNNNCTT	2 cut(s)	1740, 1772
FaqI	GGGAC	6 cut(s)	128, 500, 2394, 2402, 2432, 3196
FauI	CCCGC	2 cut(s)	47, 475
FbaI	TGATCA	2 cut(s)	1459, 2784
Fnu4HI	GCNGC	8 cut(s)	446, 618, 1234, 1435, 1648, 2532, 2958, 3282
FriOI	GRGCYC	5 cut(s)	135, 141, 273, 2320, 2740
Fsp4HI	GCNGC	8 cut(s)	446, 618, 1234, 1435, 1648, 2532, 2958, 3282
GlaI	GCGC	7 cut(s)	53, 196, 1504, 1737, 2284, 2307, 2687
GluI	GCNGC	8 cut(s)	446, 618, 1234, 1435, 1648, 2532, 2958, 3282
GsaI	CCCAGC	1 cut(s)	2324
GsuI	CTGGAG	4 cut(s)	483, 1623, 2085, 2641
HaeII	RGCGCY	2 cut(s)	198, 2309
HapII	CCGG	6 cut(s)	176, 302, 1779, 2199, 2734, 2927
HgaI	GACGC	3 cut(s)	290, 1337, 1919
HhaI	GCGC	7 cut(s)	54, 197, 1505, 1738, 2285, 2308, 2688
Hin1I	GRCGYC	2 cut(s)	282, 1930
Hin6I	GCGC	7 cut(s)	52, 195, 1503, 1736, 2283, 2306, 2686
HinP1I	GCGC	7 cut(s)	52, 195, 1503, 1736, 2283, 2306, 2686
HincII	GTYRAC	3 cut(s)	1003, 1163, 1216
HindII	GTYRAC	3 cut(s)	1003, 1163, 1216
HpaII	CCGG	6 cut(s)	176, 302, 1779, 2199, 2734, 2927
HphI	GGTGA	7 cut(s)	302, 665, 1457, 1889, 2144, 2166, 2930
Hpy166II	GTNNAC	4 cut(s)	1003, 1163, 1216, 1327
Hpy8I	GTNNAC	4 cut(s)	1003, 1163, 1216, 1327
Hpy99I	CGWCG	1 cut(s)	284
HpyAV	CCTTC	4 cut(s)	281, 713, 3131, 3213
HpyCH4III	ACNGT	6 cut(s)	466, 861, 1715, 2158, 2218, 2680
HpyCH4IV	ACGT	3 cut(s)	1562, 2699, 3295
HpyF10VI	GCNNNNNNNGC	6 cut(s)	77, 86, 398, 617, 1500, 2540
HpyF3I	CTNAG	8 cut(s)	344, 1068, 1145, 1731, 2516, 2841, 2966, 3186
HpySE526I	ACGT	3 cut(s)	1562, 2699, 3295
Hsp92I	GRCGYC	2 cut(s)	282, 1930
HspAI	GCGC	7 cut(s)	52, 195, 1503, 1736, 2283, 2306, 2686
Kpn2I	TCCGGA	1 cut(s)	1778
Ksp22I	TGATCA	2 cut(s)	1459, 2784
LguI	GCTCTTC	1 cut(s)	3144
LmnI	GCTCC	4 cut(s)	157, 767, 1510, 1644
Lsp1109I	GCAGC	7 cut(s)	604, 1245, 1446, 1659, 2518, 2969, 3293
MaeII	ACGT	3 cut(s)	1562, 2699, 3295
MaeIII	GTNAC	6 cut(s)	578, 1349, 2001, 2132, 2548, 2757
MfeI	CAATTG	4 cut(s)	168, 1024, 1260, 2037
MflI	RGATCY	2 cut(s)	632, 2467
MhlI	GDGCHC	6 cut(s)	135, 141, 273, 2075, 2320, 2740
MlyI	GAGTC	7 cut(s)	221, 875, 1168, 1354, 1567, 1680, 2768
MmeI	TCCRAC	3 cut(s)	511, 1467, 2716
Mph1103I	ATGCAT	1 cut(s)	3014
MroI	TCCGGA	1 cut(s)	1778
MroXI	GAANNNNTTC	4 cut(s)	242, 723, 2813, 3198
MseI	TTAA	7 cut(s)	363, 1758, 1938, 2192, 3030, 3072, 3159
MslI	CAYNNNNRTG	2 cut(s)	3007, 3326
MspA1I	CMGCKG	2 cut(s)	2363, 3284
MspI	CCGG	6 cut(s)	176, 302, 1779, 2199, 2734, 2927
MspR9I	CCNGG	5 cut(s)	302, 630, 1602, 2735, 2928
MunI	CAATTG	4 cut(s)	168, 1024, 1260, 2037
Mva1269I	GAATGC	2 cut(s)	1075, 1291
MvaI	CCWGG	2 cut(s)	630, 1602
MvnI	CGCG	1 cut(s)	54
MwoI	GCNNNNNNNGC	6 cut(s)	77, 86, 398, 617, 1500, 2540
NciI	CCSGG	3 cut(s)	302, 2735, 2928
NcoI	CCATGG	1 cut(s)	1900
NmuCI	GTSAC	4 cut(s)	578, 2001, 2132, 2757
NsiI	ATGCAT	1 cut(s)	3014
NspI	RCATGY	1 cut(s)	1706
PaeI	GCATGC	1 cut(s)	1706
PaeR7I	CTCGAG	1 cut(s)	1575
PagI	TCATGA	2 cut(s)	571, 1129
PceI	AGGCCT	5 cut(s)	877, 961, 1375, 2266, 2376
PciSI	GCTCTTC	1 cut(s)	3144
PctI	GAATGC	2 cut(s)	1075, 1291
PdmI	GAANNNNTTC	4 cut(s)	242, 723, 2813, 3198
PflFI	GACNNNGTC	1 cut(s)	1785
PflMI	CCANNNNNTGG	1 cut(s)	665
PfoI	TCCNGGA	1 cut(s)	300
PkrI	GCNGC	8 cut(s)	447, 619, 1235, 1436, 1649, 2533, 2959, 3283
PleI	GAGTC	7 cut(s)	221, 874, 1167, 1354, 1567, 1679, 2768
PpsI	GAGTC	7 cut(s)	221, 874, 1167, 1354, 1567, 1679, 2768
PpuMI	RGGWCCY	2 cut(s)	1787, 2389
PshBI	ATTAAT	1 cut(s)	3159
Psp124BI	GAGCTC	1 cut(s)	273
Psp5II	RGGWCCY	2 cut(s)	1787, 2389
Psp6I	CCWGG	2 cut(s)	628, 1600
PspFI	CCCAGC	1 cut(s)	2320
PspGI	CCWGG	2 cut(s)	628, 1600
PspOMI	GGGCCC	2 cut(s)	2316, 2736
PspPI	GGNCC	7 cut(s)	1787, 2316, 2317, 2389, 2584, 2736, 2737
PspPPI	RGGWCCY	2 cut(s)	1787, 2389
PspXI	VCTCGAGB	1 cut(s)	1575
PstNI	CAGNNNCTG	1 cut(s)	2587
PsuI	RGATCY	2 cut(s)	632, 2467
PsyI	GACNNNGTC	1 cut(s)	1785
PvuII	CAGCTG	1 cut(s)	3284
RsaI	GTAC	8 cut(s)	1119, 1335, 1441, 1516, 1533, 1746, 2802, 3294
RsaNI	GTAC	8 cut(s)	1118, 1334, 1440, 1515, 1532, 1745, 2801, 3293
RseI	CAYNNNNRTG	2 cut(s)	3007, 3326
SacI	GAGCTC	1 cut(s)	273
SapI	GCTCTTC	1 cut(s)	3144
SaqAI	TTAA	7 cut(s)	363, 1758, 1938, 2192, 3030, 3072, 3159
SatI	GCNGC	8 cut(s)	446, 618, 1234, 1435, 1648, 2532, 2958, 3282
Sau96I	GGNCC	7 cut(s)	1787, 2316, 2317, 2389, 2584, 2736, 2737
ScaI	AGTACT	1 cut(s)	1516
SchI	GAGTC	7 cut(s)	221, 875, 1168, 1354, 1567, 1680, 2768
ScrFI	CCNGG	5 cut(s)	302, 630, 1602, 2735, 2928
SduI	GDGCHC	6 cut(s)	135, 141, 273, 2075, 2320, 2740
SfcI	CTRYAG	1 cut(s)	729
Sfr274I	CTCGAG	1 cut(s)	1575
SinI	GGWCC	2 cut(s)	1787, 2389
SlaI	CTCGAG	1 cut(s)	1575
SmiMI	CAYNNNNRTG	2 cut(s)	3007, 3326
SmlI	CTYRAG	7 cut(s)	184, 1104, 1320, 1518, 1575, 1682, 2253
SmoI	CTYRAG	7 cut(s)	184, 1104, 1320, 1518, 1575, 1682, 2253
SphI	GCATGC	1 cut(s)	1706
SseBI	AGGCCT	5 cut(s)	877, 961, 1375, 2266, 2376
SsiI	CCGC	8 cut(s)	54, 95, 155, 445, 459, 482, 1658, 2361
SspI	AATATT	1 cut(s)	1622
SstI	GAGCTC	1 cut(s)	273
StuI	AGGCCT	5 cut(s)	877, 961, 1375, 2266, 2376
StyD4I	CCNGG	5 cut(s)	300, 628, 1600, 2733, 2926
StyI	CCWWGG	3 cut(s)	1900, 2435, 2471
TaaI	ACNGT	6 cut(s)	466, 861, 1715, 2158, 2218, 2680
TaiI	ACGT	3 cut(s)	1565, 2702, 3298
TatI	WGTACW	4 cut(s)	1117, 1333, 1514, 1744
TauI	GCSGC	1 cut(s)	448
Tru1I	TTAA	7 cut(s)	363, 1758, 1938, 2192, 3030, 3072, 3159
Tru9I	TTAA	7 cut(s)	363, 1758, 1938, 2192, 3030, 3072, 3159
TscAI	CASTG	4 cut(s)	790, 1287, 2010, 2080
TseFI	GTSAC	4 cut(s)	578, 2001, 2132, 2757
TseI	GCWGC	7 cut(s)	617, 1233, 1434, 1647, 2531, 2957, 3281
Tsp45I	GTSAC	4 cut(s)	578, 2001, 2132, 2757
TspGWI	ACGGA	2 cut(s)	1313, 2396
TspRI	CASTG	4 cut(s)	790, 1287, 2010, 2080
Tth111I	GACNNNGTC	1 cut(s)	1785
Van91I	CCANNNNNTGG	1 cut(s)	665
VpaK11BI	GGWCC	2 cut(s)	1787, 2389
VspI	ATTAAT	1 cut(s)	3159
XagI	CCTNNNNNAGG	1 cut(s)	2550
XapI	RAATTY	2 cut(s)	1111, 2381
XceI	RCATGY	1 cut(s)	1706
XhoI	CTCGAG	1 cut(s)	1575
XmnI	GAANNNNTTC	4 cut(s)	242, 723, 2813, 3198
ZrmI	AGTACT	1 cut(s)	1516
Zsp2I	ATGCAT	1 cut(s)	3014

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.