Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0002231

Physical Location & Seq

Genomic Coordinates Forward (+)

27702093 .. 27711050

Gene Structure 8958 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG153800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3354 bp

ATGAATGAAGAGGAAGTGGAACCTCCACTCGGGGTTCTATTGGGTCGAAAGCGCGGGAAAACGAAGTCCGCCAAGAGAGCAAGCCAAGCAACACCTCACAACACAGAGCCACTTCAAATCGAACCAGAGCCCGTCCCGATCGATGCGGAGCCAATTCAAATTGAGCCGGAGCCAGTTGCAATTAAGCCAGAGAACTCAAGGAATGGCGCTAGGGTTAGTGTTTCGATGTTCGATGACTCGGTGGAGAATCACTTCAGAGTCATGCACACGATTTCCGAGCTCTGTGGCGACGCCGAAGATGAGCCACTCCCGGTGAGCGACATTCAACGCTTATCATCCTCCACCACTTTCTTGAGGGAATGGGCAGATTTTAAGTATGAACCTAGAGATGTTCGATTCGCTTGCGAAGCAGAAAGCTCTGATGAGGAGGATGTTGTCAGTAGGATAAACTTGCGGCAGTTTTCTTCTGCAACTGTTCCACAGAACGAGGTGGGGAACACATCTTCTCCAGAGTTGAGACAAGACTATGTGATGTATGTTGGAGGGCCTGTTTGGGCATTGGATTGGTGTCCTAGAGTTCATGAAAGTCACGACCGTCATGCAAAGTGCGAGTTTATTGCCATTGCTGCTCATCCCCCTGGATCTTCTTACCACAAGTTAGGTGAGCCACTTACTGGCAGAGGTGCCATTCAGATATGGTGTCTTCTAAATGCTAGTGTAAATGATGAAGGTGTTCCTATAGGAGACAAACCAAAAGGAGGAAATAAAAGGAGTGGAGCCACAGAAAAATGCACTGAACAAAAAAGGGGAAGACCCAGAAAGAAGCCATTAGAAGAATCTGTTGGCAAAGAGGCCGCAGAAGAAAAACTGTCTGAGCCAAAAAGGCCGAGAGGAAGACCTAGAAAGAAGCCAATAGAAGAATCTATTGACAAAGAGGCCAAAGAAGAGAAATCAACTCAACCAAAGAGGCCTAGAGGAAGACCTAGAAATAAATCAATAGAAGAATCTGTTGACAACTTGGATGGGAGAACCAATTGTGATGAGGTTCTTGCTATTGATTATCCAAAGGAATCATCTGAGTTGCATTCTATGGATTGTCTTCCTGCAAATACTCAAGGAAATTTTGTACAAGAATATCATGGAAAAAAGCAACTAAGTTATGGGCAGAGTCAACCGAAGAAGCCTAGAGGAAGACCCATAAAGAAGCCAATAAAAGAACCTGTTGACAATTTAGATGGGGGCAACAATAATTTTGAGGTTCTTGCTATTGAATACCAAAAGGAATCACTGGAGTTGCATTCTATGGATTGTCTTCTTGCAAATACTCAAGTGGACGCTGTACAAGAAACAAGTTACAAGCAGACTCAATCAAAGAGGTCTAGAGGAATACATGGAAAGAAGCCAATAGAAGAATCTGTTGAAAACTTGGATGACAGCAGCAATACGGCTGAGGCTCTTGATGATCAATATCCAAAGGAATTATTGGAGTTGGAGGGCAGGGATTGCGCTCCTGAAAATACTCGAGGAGATGAGGTACAAGATGATAGAGGTAAGAAAAGAAAAACGAACAGAAAGACTCGAGCAAAGATTCCTAGAGAAAAACCTGGGGAGAAGCTAGTAGAATATTCTGTTGATAACTTGCATGGGAGCAGCCATTATGCGGAGGCTCTTGGAGTCCAATATCTCAAGGAAACATCAGAGTTGCATGCTATGGATTGTGTTCCTGCATTTACTCAGGCGCATGATGTACAAGAAGCTCTTAATGAAAAACTTGAAAGTTCCGGACCGGGTCCTCAAACAAATAATAATGTTTCAAATAATGGTTATGCTGAAATTGGCTCAATTAGGTGTTCAGTTCCGAAGGATGTAGCATTGCCAAGAATCATATTCTGCCTAGCTCACCATGGAAAGGTTGCTTGGGATGTGAAATGGCGTCCTCTTAATGAACATGATTCCAGATGCAAGCATCGAATGGGCTATCTTGCTGTTCTGTTGGGGAACGGGTCTCTGGAAGTGTGGGAGGTTCCTGTTCCTCGTGCAATTGAAGTTATTTATTCTTCTTCATCTGGAGAGGGCACTGATCCTCGCTTTGTAAAATTGGCACCAGTATTTAGATGCTCAATGTTGAAGTCTGGTGACAAAAAAAGCATCCCTCTTACTGTGGAATGGTCAGCTTCACCACCTCACGATTACTTAATTGCCGGATGCCATGATGGAACTGTTGCTATGTGGAAGTTTTCTGCTAGTAATGTATCTCAAGATACAAGGCCTTTACTTTGTTTCAGCGCAGATACAAATCCTATTAGGGCGCTTTCTTGGGCCCCAGCTCAAAGCAATTCAGACAATGCAAATGTTATAGCTACTGCTGGACATGGAGGCCTAAAATTTTGGGACCTACGTGATCCATTCCGTCCCTTGTGGGACATCGATCATATACCAAGGTTCATATATAGTCTGGATTGGATTCCAGATCCAAGGTGTGTTCTTCTCTCCTTTGATGATGGAACAATGAGACTTCTCAGCTTGACAAAGGCTGCCTCTGATGCCCCTGTAACAGGAAAACCCTTTGCTGGAACAAAACAACAGGGCCTGCACAATCTTGGTTGTTTGCCTTTTGCTATCTGGAGTGTTCAAGTATCAAGACTAACAGGTATGGTTGCATATTGTGGTGCAGATGGAACTGTTCTGCGCTTCCAACTTACGTCCAATGCTGTGGAGAAAGATGCTACACGAAACCGGGCCCCACATTTTCTGTGCGTGTCACTAACTGAAGAGGACTCTGTTGTGACCATCAATACCCCAGTACCACATAATCCTTTCCCGTTGAAAACATCTCGTAAAGCTGAGCCAAACAAAGTGAAGAGAGAACATGATAAGATGACAACTACATCACAAGATCAAGTTTTAGCTCTTTGTTACGGTGATGATCCAGGTATTGAATTAGAATCTGGGAAAGAAGCAGCATCTCTTAGAAGCAAAACACTCAAATCTGCGGATGACCAAGCATTAGTATGCATGGATCAAGAGCCATTTAATACCCAAGACGAAGAAATTGGAGAAAAGGGTACATCTCTTAAAGGCATTGTAAAACAGAAATCCAAGTCTAGTAAGAAAAATACAGAGGATGAACTAGAACTGGAAGGCAGAGATGAAGAGCTGATTAATACGCAGAGACAAAAAACTGGGACTGAGTATGAAGTTTTTCCTTCCAAGCAAGTAGCAATGCACCGAGTGAGATGGAACATGAACAAGGGTAGTGAGAGATGGTTATGCTATGGAGGGGCAGCTGGAATAGTACGTTGTCAAGAGATTGTTTTGTCTGACATTGATATGAAATGGGCAAGGAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AT_hook

Protein Analysis

1117

Amino Acids

124.57

Weight (kDa)

6.02

Isoelectric Point (pI)

44.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002231)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19485 AT1G19485
fragaria_vesca	FvH4_6g18260 FvH4_6g18260 FvH4_6g18260 FvH4_6g18260 FvH4_7g02500
malus_domestica	MD09G1081300.v1.1 MD12G1022600.v1.1
prunus_persica	Prupe.7G114200_v2.0.a1 Prupe.7G114200_v2.0.a1
pyrus_communis	pycom09g00800 pycom12g02090
rosa_chinensis	RchiOBHm_Chr3g0472691 RchiOBHm_Chr3g0472701 RchiOBHm_Chr4g0409331
rosa_laevigata	RLG00000008568 RLG00000016132 RLG00000024063
rosa_multiflora	Rmu_co8285783.1_g000001 Rmu_sc0001616.1_g000052 Rmu_sc0001616.1_g000057 Rmu_sc0001851.1_g000016 Rmu_sc0003510.1_g000010 Rmu_sc0003510.1_g000011 Rmu_sc0003510.1_g000012 Rmu_sc0034965.1_g000001
rosa_roxburghii	Rroxscaffold_5G00353840 Rroxscaffold_6G00408710
rosa_rugosa	Rorug03G0127200 Rorug04G0092400 Rorug04G0092500
rosa_samantha	Rh3AG179900 Rh3BG205800 Rh3CG202900 Rh3DG169900 Rh4AG155600 Rh4BG153800 Rh4CG164600 Rh4DG148500
rosa_wichuraiana	Rw3G016270 Rw4G012710 Rw4G012730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	683, 2101
AccB7I	CCANNNNNTGG	1 cut(s)	674
AccII	CGCG	1 cut(s)	54
AccIII	TCCGGA	1 cut(s)	1781
AciI	CCGC	7 cut(s)	54, 69, 146, 454, 855, 1661, 2993
AclWI	GGATC	6 cut(s)	649, 2075, 2396, 2465, 2921, 3027
AcsI	RAATTY	2 cut(s)	1120, 2384
AcuI	CTGAAG	2 cut(s)	238, 2790
AcyI	GRCGYC	2 cut(s)	291, 1933
AdeI	CACNNNGTG	1 cut(s)	3232
AfaI	GTAC	7 cut(s)	1128, 1341, 1536, 1749, 2805, 3067, 3297
AfiI	CCNNNNNNNGG	7 cut(s)	29, 674, 758, 1660, 1909, 2555, 2570
AjnI	CCWGG	3 cut(s)	637, 1603, 2929
AjuI	GAANNNNNNNTTGG	4 cut(s)	825, 857, 1900, 1932
Alw21I	GWGCWC	1 cut(s)	282
Alw26I	GTCTC	5 cut(s)	511, 738, 2010, 2506, 3166
AlwI	GGATC	6 cut(s)	649, 2075, 2396, 2465, 2921, 3027
AlwNI	CAGNNNCTG	1 cut(s)	2590
Ama87I	CYCGRG	3 cut(s)	29, 1521, 1578
Aor13HI	TCCGGA	1 cut(s)	1781
ApaI	GGGCCC	2 cut(s)	2323, 2743
ApeKI	GCWGC	6 cut(s)	626, 1437, 1650, 2534, 2960, 3284
ApoI	RAATTY	2 cut(s)	1120, 2384
AseI	ATTAAT	1 cut(s)	3162
Asp700I	GAANNNNTTC	3 cut(s)	251, 732, 3201
AspLEI	GCGC	7 cut(s)	54, 209, 1508, 1741, 2288, 2311, 2691
AspS9I	GGNCC	9 cut(s)	545, 1784, 1790, 2319, 2320, 2392, 2587, 2739, 2740
AsuC2I	CCSGG	3 cut(s)	311, 1788, 2738
AsuHPI	GGTGA	6 cut(s)	325, 674, 1892, 2147, 2169, 2933
AvaI	CYCGRG	3 cut(s)	29, 1521, 1578
AvaII	GGWCC	3 cut(s)	1784, 1790, 2392
BaeGI	GKGCMC	3 cut(s)	2078, 2323, 2743
BaeI	ACNNNNGTAYC	2 cut(s)	2787, 2820
BanI	GGYRCC	2 cut(s)	683, 2101
BanII	GRGCYC	4 cut(s)	132, 282, 2323, 2743
BauI	CACGAG	1 cut(s)	2034
BbsI	GAAGAC	7 cut(s)	695, 817, 901, 985, 1091, 1198, 1304
Bbv12I	GWGCWC	1 cut(s)	282
BbvCI	CCTCAGC	1 cut(s)	1449
BbvI	GCAGC	6 cut(s)	613, 1449, 1662, 2521, 2972, 3296
BccI	CCATC	8 cut(s)	1016, 1229, 2207, 2495, 2669, 2798, 3231, 3258
BceAI	ACGGC	1 cut(s)	1461
BcgI	CGANNNNNNTGC	6 cut(s)	384, 418, 581, 599, 615, 633
BciT130I	CCWGG	3 cut(s)	639, 1605, 2931
BclI	TGATCA	1 cut(s)	1462
BcnI	CCSGG	3 cut(s)	311, 1788, 2738
BcoDI	GTCTC	5 cut(s)	511, 738, 2010, 2506, 3166
BfmI	CTRYAG	1 cut(s)	738
BfoI	RGCGCY	2 cut(s)	210, 2312
BglI	GCCNNNNNGGC	1 cut(s)	883
BisI	GCNGC	8 cut(s)	455, 627, 855, 1438, 1651, 2535, 2961, 3285
BlpI	GCTNAGC	1 cut(s)	2844
BlsI	GCNGC	8 cut(s)	456, 628, 856, 1439, 1652, 2536, 2962, 3286
Bme1390I	CCNGG	6 cut(s)	311, 639, 1605, 1788, 2738, 2931
Bme18I	GGWCC	3 cut(s)	1784, 1790, 2392
BmeT110I	CYCGRG	3 cut(s)	29, 1521, 1578
BmgT120I	GGNCC	9 cut(s)	545, 1784, 1790, 2319, 2320, 2392, 2587, 2739, 2740
BmrFI	CCNGG	6 cut(s)	311, 639, 1605, 1788, 2738, 2931
BmrI	ACTGGG	2 cut(s)	2795, 3192
BmsI	GCATC	9 cut(s)	133, 1949, 1975, 2105, 2157, 2195, 2533, 2713, 2972
BmuI	ACTGGG	2 cut(s)	2795, 3192
BpiI	GAAGAC	7 cut(s)	695, 817, 901, 985, 1091, 1198, 1304
BpmI	CTGGAG	4 cut(s)	492, 1310, 2088, 2644
Bpu10I	CCTNAGC	1 cut(s)	1449
Bpu1102I	GCTNAGC	1 cut(s)	2844
BpuEI	CTTGAG	6 cut(s)	181, 373, 1098, 1311, 1670, 2241
BpuMI	CCSGG	3 cut(s)	311, 1788, 2738
Bsa29I	ATCGAT	2 cut(s)	141, 2427
BsaAI	YACGTR	1 cut(s)	2399
BsaBI	GATNNNNATC	2 cut(s)	1467, 2295
BsaHI	GRCGYC	2 cut(s)	291, 1933
BsaI	GGTCTC	1 cut(s)	2010
BsaJI	CCNNGG	5 cut(s)	637, 1604, 1903, 2438, 2474
BsaWI	WCCGGW	1 cut(s)	1781
BsaXI	ACNNNNNCTCC	6 cut(s)	490, 520, 534, 564, 1518, 1548
Bsc4I	CCNNNNNNNGG	7 cut(s)	29, 674, 758, 1660, 1909, 2555, 2570
Bse1I	ACTGG	7 cut(s)	173, 679, 1293, 2105, 2801, 3141, 3187
Bse3DI	GCAATG	3 cut(s)	621, 1871, 3228
Bse8I	GATNNNNATC	2 cut(s)	1467, 2295
BseAI	TCCGGA	1 cut(s)	1781
BseBI	CCWGG	3 cut(s)	639, 1605, 2931
BseCI	ATCGAT	2 cut(s)	141, 2427
BseDI	CCNNGG	5 cut(s)	637, 1604, 1903, 2438, 2474
BseJI	GATNNNNATC	2 cut(s)	1467, 2295
BseLI	CCNNNNNNNGG	7 cut(s)	29, 674, 758, 1660, 1909, 2555, 2570
BseMI	GCAATG	3 cut(s)	621, 1871, 3228
BseMII	CTCAG	7 cut(s)	864, 1068, 1440, 1748, 2533, 2835, 3180
BseNI	ACTGG	7 cut(s)	173, 679, 1293, 2105, 2801, 3141, 3187
BseRI	GAGGAG	2 cut(s)	440, 1539
BseSI	GKGCMC	3 cut(s)	2078, 2323, 2743
BseXI	GCAGC	6 cut(s)	613, 1449, 1662, 2521, 2972, 3296
BseYI	CCCAGC	1 cut(s)	2323
BsgI	GTGCAG	2 cut(s)	2576, 2691
Bsh1236I	CGCG	1 cut(s)	54
Bsh1285I	CGRYCG	2 cut(s)	141, 595
BshNI	GGYRCC	2 cut(s)	683, 2101
BshVI	ATCGAT	2 cut(s)	141, 2427
BsiEI	CGRYCG	2 cut(s)	141, 595
BsiHKAI	GWGCWC	1 cut(s)	282
BsiHKCI	CYCGRG	3 cut(s)	29, 1521, 1578
BsiSI	CCGG	6 cut(s)	167, 311, 1782, 1787, 2202, 2737
BslFI	GGGAC	5 cut(s)	119, 2397, 2405, 2435, 3199
BslI	CCNNNNNNNGG	7 cut(s)	29, 674, 758, 1660, 1909, 2555, 2570
BsmAI	GTCTC	5 cut(s)	511, 738, 2010, 2506, 3166
BsmFI	GGGAC	5 cut(s)	119, 2397, 2405, 2435, 3199
BsmI	GAATGC	2 cut(s)	1084, 1297
Bso31I	GGTCTC	1 cut(s)	2010
BsoBI	CYCGRG	3 cut(s)	29, 1521, 1578
Bsp120I	GGGCCC	2 cut(s)	2319, 2739
Bsp1286I	GDGCHC	5 cut(s)	132, 282, 2078, 2323, 2743
Bsp13I	TCCGGA	1 cut(s)	1781
Bsp1407I	TGTACA	3 cut(s)	1126, 1339, 1747
Bsp1720I	GCTNAGC	1 cut(s)	2844
Bsp19I	CCATGG	1 cut(s)	1903
BspACI	CCGC	7 cut(s)	54, 69, 146, 454, 855, 1661, 2993
BspCNI	CTCAG	7 cut(s)	865, 1069, 1441, 1747, 2532, 2836, 3181
BspDI	ATCGAT	2 cut(s)	141, 2427
BspEI	TCCGGA	1 cut(s)	1781
BspFNI	CGCG	1 cut(s)	54
BspHI	TCATGA	1 cut(s)	580
BspPI	GGATC	6 cut(s)	649, 2075, 2396, 2465, 2921, 3027
BspQI	GCTCTTC	1 cut(s)	3147
BspT107I	GGYRCC	2 cut(s)	683, 2101
BspTNI	GGTCTC	1 cut(s)	2010
BsrDI	GCAATG	3 cut(s)	621, 1871, 3228
BsrGI	TGTACA	3 cut(s)	1126, 1339, 1747
BsrI	ACTGG	7 cut(s)	173, 679, 1293, 2105, 2801, 3141, 3187
BssECI	CCNNGG	5 cut(s)	637, 1604, 1903, 2438, 2474
BssNI	GRCGYC	2 cut(s)	291, 1933
BssSI	CACGAG	1 cut(s)	2034
BssT1I	CCWWGG	3 cut(s)	1903, 2438, 2474
Bst2BI	CACGAG	1 cut(s)	2034
Bst2UI	CCWGG	3 cut(s)	639, 1605, 2931
Bst4CI	ACNGT	7 cut(s)	475, 596, 870, 2161, 2221, 2683, 2921
Bst6I	CTCTTC	5 cut(s)	3, 939, 2766, 2855, 3147
BstACI	GRCGYC	2 cut(s)	291, 1933
BstAPI	GCANNNNNTGC	1 cut(s)	1503
BstAUI	TGTACA	3 cut(s)	1126, 1339, 1747
BstBAI	YACGTR	1 cut(s)	2399
BstC8I	GCNNGC	5 cut(s)	82, 403, 1707, 1964, 2591
BstDEI	CTNAG	9 cut(s)	873, 1077, 1154, 1449, 1734, 2519, 2844, 2969, 3189
BstDSI	CCRYGG	1 cut(s)	1903
BstENI	CCTNNNNNAGG	1 cut(s)	2553
BstFNI	CGCG	1 cut(s)	54
BstH2I	RGCGCY	2 cut(s)	210, 2312
BstHHI	GCGC	7 cut(s)	54, 209, 1508, 1741, 2288, 2311, 2691
BstMAI	GTCTC	5 cut(s)	511, 738, 2010, 2506, 3166
BstMCI	CGRYCG	2 cut(s)	141, 595
BstMWI	GCNNNNNNNGC	7 cut(s)	77, 86, 407, 626, 883, 1503, 2543
BstNI	CCWGG	3 cut(s)	639, 1605, 2931
BstNSI	RCATGY	1 cut(s)	1709
BstSCI	CCNGG	6 cut(s)	309, 637, 1603, 1786, 2736, 2929
BstSFI	CTRYAG	1 cut(s)	738
BstSLI	GKGCMC	3 cut(s)	2078, 2323, 2743
BstUI	CGCG	1 cut(s)	54
BstV1I	GCAGC	6 cut(s)	613, 1449, 1662, 2521, 2972, 3296
BstV2I	GAAGAC	7 cut(s)	695, 817, 901, 985, 1091, 1198, 1304
BstX2I	RGATCY	2 cut(s)	641, 2470
BstXI	CCANNNNNNTGG	1 cut(s)	2713
BstYI	RGATCY	2 cut(s)	641, 2470
Bsu15I	ATCGAT	2 cut(s)	141, 2427
BsuTUI	ATCGAT	2 cut(s)	141, 2427
BtgI	CCRYGG	1 cut(s)	1903
BtsIMutI	CAGTG	3 cut(s)	792, 1286, 2076
Cac8I	GCNNGC	5 cut(s)	82, 403, 1707, 1964, 2591
CaiI	CAGNNNCTG	1 cut(s)	2590
CciI	TCATGA	1 cut(s)	580
CfoI	GCGC	7 cut(s)	54, 209, 1508, 1741, 2288, 2311, 2691
Cfr13I	GGNCC	9 cut(s)	545, 1784, 1790, 2319, 2320, 2392, 2587, 2739, 2740
ClaI	ATCGAT	2 cut(s)	141, 2427
CpoI	CGGWCCG	1 cut(s)	1784
CseI	GACGC	3 cut(s)	299, 1343, 1922
Csp6I	GTAC	7 cut(s)	1127, 1340, 1535, 1748, 2804, 3066, 3296
CspI	CGGWCCG	1 cut(s)	1784
CviQI	GTAC	7 cut(s)	1127, 1340, 1535, 1748, 2804, 3066, 3296
DdeI	CTNAG	9 cut(s)	873, 1077, 1154, 1449, 1734, 2519, 2844, 2969, 3189
DraIII	CACNNNGTG	1 cut(s)	3232
Eam1104I	CTCTTC	5 cut(s)	3, 939, 2766, 2855, 3147
EarI	CTCTTC	5 cut(s)	3, 939, 2766, 2855, 3147
EciI	GGCGGA	1 cut(s)	58
Ecl136II	GAGCTC	1 cut(s)	280
Eco130I	CCWWGG	3 cut(s)	1903, 2438, 2474
Eco147I	AGGCCT	3 cut(s)	970, 2269, 2379
Eco24I	GRGCYC	4 cut(s)	132, 282, 2323, 2743
Eco31I	GGTCTC	1 cut(s)	2010
Eco47I	GGWCC	3 cut(s)	1784, 1790, 2392
Eco53kI	GAGCTC	1 cut(s)	280
Eco57I	CTGAAG	2 cut(s)	238, 2790
Eco88I	CYCGRG	3 cut(s)	29, 1521, 1578
EcoICRI	GAGCTC	1 cut(s)	280
EcoNI	CCTNNNNNAGG	1 cut(s)	2553
EcoO109I	RGGNCCY	6 cut(s)	545, 1790, 2320, 2392, 2587, 2740
EcoRII	CCWGG	3 cut(s)	637, 1603, 2929
EcoT14I	CCWWGG	3 cut(s)	1903, 2438, 2474
EcoT22I	ATGCAT	1 cut(s)	3017
EcoT38I	GRGCYC	4 cut(s)	132, 282, 2323, 2743
ErhI	CCWWGG	3 cut(s)	1903, 2438, 2474
FalI	AAGNNNNNCTT	2 cut(s)	1743, 1775
FaqI	GGGAC	5 cut(s)	119, 2397, 2405, 2435, 3199
FauI	CCCGC	1 cut(s)	47
FbaI	TGATCA	1 cut(s)	1462
Fnu4HI	GCNGC	8 cut(s)	455, 627, 855, 1438, 1651, 2535, 2961, 3285
FriOI	GRGCYC	4 cut(s)	132, 282, 2323, 2743
Fsp4HI	GCNGC	8 cut(s)	455, 627, 855, 1438, 1651, 2535, 2961, 3285
GlaI	GCGC	7 cut(s)	53, 208, 1507, 1740, 2287, 2310, 2690
GluI	GCNGC	8 cut(s)	455, 627, 855, 1438, 1651, 2535, 2961, 3285
GsaI	CCCAGC	1 cut(s)	2327
GsuI	CTGGAG	4 cut(s)	492, 1310, 2088, 2644
HaeII	RGCGCY	2 cut(s)	210, 2312
HapII	CCGG	6 cut(s)	167, 311, 1782, 1787, 2202, 2737
HgaI	GACGC	3 cut(s)	299, 1343, 1922
HhaI	GCGC	7 cut(s)	54, 209, 1508, 1741, 2288, 2311, 2691
Hin1I	GRCGYC	2 cut(s)	291, 1933
Hin6I	GCGC	7 cut(s)	52, 207, 1506, 1739, 2286, 2309, 2689
HinP1I	GCGC	7 cut(s)	52, 207, 1506, 1739, 2286, 2309, 2689
HincII	GTYRAC	3 cut(s)	1012, 1172, 1225
HindII	GTYRAC	3 cut(s)	1012, 1172, 1225
HpaII	CCGG	6 cut(s)	167, 311, 1782, 1787, 2202, 2737
HphI	GGTGA	6 cut(s)	325, 674, 1892, 2147, 2169, 2933
Hpy166II	GTNNAC	4 cut(s)	1012, 1172, 1225, 1333
Hpy8I	GTNNAC	4 cut(s)	1012, 1172, 1225, 1333
Hpy99I	CGWCG	1 cut(s)	293
HpyAV	CCTTC	4 cut(s)	722, 1855, 3134, 3216
HpyCH4III	ACNGT	7 cut(s)	475, 596, 870, 2161, 2221, 2683, 2921
HpyCH4IV	ACGT	3 cut(s)	2398, 2702, 3298
HpyF10VI	GCNNNNNNNGC	7 cut(s)	77, 86, 407, 626, 883, 1503, 2543
HpyF3I	CTNAG	9 cut(s)	873, 1077, 1154, 1449, 1734, 2519, 2844, 2969, 3189
HpySE526I	ACGT	3 cut(s)	2398, 2702, 3298
Hsp92I	GRCGYC	2 cut(s)	291, 1933
HspAI	GCGC	7 cut(s)	52, 207, 1506, 1739, 2286, 2309, 2689
Kpn2I	TCCGGA	1 cut(s)	1781
Ksp22I	TGATCA	1 cut(s)	1462
LguI	GCTCTTC	1 cut(s)	3147
LmnI	GCTCC	5 cut(s)	148, 169, 776, 1513, 1647
Lsp1109I	GCAGC	6 cut(s)	613, 1449, 1662, 2521, 2972, 3296
LweI	GCATC	9 cut(s)	133, 1949, 1975, 2105, 2157, 2195, 2533, 2713, 2972
MaeII	ACGT	3 cut(s)	2398, 2702, 3298
MaeIII	GTNAC	7 cut(s)	587, 1352, 2135, 2551, 2760, 2785, 2915
MfeI	CAATTG	2 cut(s)	1033, 2040
MflI	RGATCY	2 cut(s)	641, 2470
MhlI	GDGCHC	5 cut(s)	132, 282, 2078, 2323, 2743
MlyI	GAGTC	7 cut(s)	230, 267, 1177, 1357, 1570, 1683, 2771
MmeI	TCCRAC	3 cut(s)	520, 1470, 2719
Mph1103I	ATGCAT	1 cut(s)	3017
MroI	TCCGGA	1 cut(s)	1781
MroXI	GAANNNNTTC	3 cut(s)	251, 732, 3201
MseI	TTAA	8 cut(s)	183, 372, 1761, 1941, 2195, 3033, 3075, 3162
MslI	CAYNNNNRTG	2 cut(s)	3010, 3329
MspA1I	CMGCKG	1 cut(s)	3287
MspI	CCGG	6 cut(s)	167, 311, 1782, 1787, 2202, 2737
MspR9I	CCNGG	6 cut(s)	311, 639, 1605, 1788, 2738, 2931
MunI	CAATTG	2 cut(s)	1033, 2040
Mva1269I	GAATGC	2 cut(s)	1084, 1297
MvaI	CCWGG	3 cut(s)	639, 1605, 2931
MvnI	CGCG	1 cut(s)	54
MwoI	GCNNNNNNNGC	7 cut(s)	77, 86, 407, 626, 883, 1503, 2543
NciI	CCSGG	3 cut(s)	311, 1788, 2738
NcoI	CCATGG	1 cut(s)	1903
NmeAIII	GCCGAG	1 cut(s)	912
NmuCI	GTSAC	4 cut(s)	587, 2135, 2760, 2785
NsiI	ATGCAT	1 cut(s)	3017
NspI	RCATGY	1 cut(s)	1709
PaeI	GCATGC	1 cut(s)	1709
PaeR7I	CTCGAG	2 cut(s)	1521, 1578
PagI	TCATGA	1 cut(s)	580
PceI	AGGCCT	3 cut(s)	970, 2269, 2379
PciSI	GCTCTTC	1 cut(s)	3147
PctI	GAATGC	2 cut(s)	1084, 1297
PdmI	GAANNNNTTC	3 cut(s)	251, 732, 3201
PflFI	GACNNNGTC	1 cut(s)	1788
PflMI	CCANNNNNTGG	1 cut(s)	674
PkrI	GCNGC	8 cut(s)	456, 628, 856, 1439, 1652, 2536, 2962, 3286
Ple19I	CGATCG	1 cut(s)	141
PleI	GAGTC	7 cut(s)	230, 266, 1176, 1357, 1570, 1682, 2771
PpsI	GAGTC	7 cut(s)	230, 266, 1176, 1357, 1570, 1682, 2771
Ppu21I	YACGTR	1 cut(s)	2399
PpuMI	RGGWCCY	2 cut(s)	1790, 2392
PshBI	ATTAAT	1 cut(s)	3162
Psp124BI	GAGCTC	1 cut(s)	282
Psp5II	RGGWCCY	2 cut(s)	1790, 2392
Psp6I	CCWGG	3 cut(s)	637, 1603, 2929
PspFI	CCCAGC	1 cut(s)	2323
PspGI	CCWGG	3 cut(s)	637, 1603, 2929
PspOMI	GGGCCC	2 cut(s)	2319, 2739
PspPI	GGNCC	9 cut(s)	545, 1784, 1790, 2319, 2320, 2392, 2587, 2739, 2740
PspPPI	RGGWCCY	2 cut(s)	1790, 2392
PspXI	VCTCGAGB	2 cut(s)	1521, 1578
PstNI	CAGNNNCTG	1 cut(s)	2590
PsuI	RGATCY	2 cut(s)	641, 2470
PsyI	GACNNNGTC	1 cut(s)	1788
PvuI	CGATCG	1 cut(s)	141
PvuII	CAGCTG	1 cut(s)	3287
RsaI	GTAC	7 cut(s)	1128, 1341, 1536, 1749, 2805, 3067, 3297
RsaNI	GTAC	7 cut(s)	1127, 1340, 1535, 1748, 2804, 3066, 3296
RseI	CAYNNNNRTG	2 cut(s)	3010, 3329
Rsr2I	CGGWCCG	1 cut(s)	1784
RsrII	CGGWCCG	1 cut(s)	1784
SacI	GAGCTC	1 cut(s)	282
SapI	GCTCTTC	1 cut(s)	3147
SaqAI	TTAA	8 cut(s)	183, 372, 1761, 1941, 2195, 3033, 3075, 3162
SatI	GCNGC	8 cut(s)	455, 627, 855, 1438, 1651, 2535, 2961, 3285
Sau96I	GGNCC	9 cut(s)	545, 1784, 1790, 2319, 2320, 2392, 2587, 2739, 2740
SchI	GAGTC	7 cut(s)	230, 267, 1177, 1357, 1570, 1683, 2771
ScrFI	CCNGG	6 cut(s)	311, 639, 1605, 1788, 2738, 2931
SduI	GDGCHC	5 cut(s)	132, 282, 2078, 2323, 2743
SfaNI	GCATC	9 cut(s)	133, 1949, 1975, 2105, 2157, 2195, 2533, 2713, 2972
SfcI	CTRYAG	1 cut(s)	738
Sfr274I	CTCGAG	2 cut(s)	1521, 1578
SinI	GGWCC	3 cut(s)	1784, 1790, 2392
SlaI	CTCGAG	2 cut(s)	1521, 1578
SmiMI	CAYNNNNRTG	2 cut(s)	3010, 3329
SmlI	CTYRAG	8 cut(s)	196, 352, 1113, 1326, 1521, 1578, 1685, 2256
SmoI	CTYRAG	8 cut(s)	196, 352, 1113, 1326, 1521, 1578, 1685, 2256
SphI	GCATGC	1 cut(s)	1709
SseBI	AGGCCT	3 cut(s)	970, 2269, 2379
SsiI	CCGC	7 cut(s)	54, 69, 146, 454, 855, 1661, 2993
SspI	AATATT	1 cut(s)	1625
SstI	GAGCTC	1 cut(s)	282
StuI	AGGCCT	3 cut(s)	970, 2269, 2379
StyD4I	CCNGG	6 cut(s)	309, 637, 1603, 1786, 2736, 2929
StyI	CCWWGG	3 cut(s)	1903, 2438, 2474
TaaI	ACNGT	7 cut(s)	475, 596, 870, 2161, 2221, 2683, 2921
TaiI	ACGT	3 cut(s)	2401, 2705, 3301
TatI	WGTACW	3 cut(s)	1126, 1339, 1747
TauI	GCSGC	2 cut(s)	457, 857
Tru1I	TTAA	8 cut(s)	183, 372, 1761, 1941, 2195, 3033, 3075, 3162
Tru9I	TTAA	8 cut(s)	183, 372, 1761, 1941, 2195, 3033, 3075, 3162
TscAI	CASTG	3 cut(s)	799, 1293, 2083
TseFI	GTSAC	4 cut(s)	587, 2135, 2760, 2785
TseI	GCWGC	6 cut(s)	626, 1437, 1650, 2534, 2960, 3284
Tsp45I	GTSAC	4 cut(s)	587, 2135, 2760, 2785
TspGWI	ACGGA	1 cut(s)	2399
TspRI	CASTG	3 cut(s)	799, 1293, 2083
Tth111I	GACNNNGTC	1 cut(s)	1788
Van91I	CCANNNNNTGG	1 cut(s)	674
VpaK11BI	GGWCC	3 cut(s)	1784, 1790, 2392
VspI	ATTAAT	1 cut(s)	3162
XagI	CCTNNNNNAGG	1 cut(s)	2553
XapI	RAATTY	2 cut(s)	1120, 2384
XbaI	TCTAGA	1 cut(s)	1379
XceI	RCATGY	1 cut(s)	1709
XhoI	CTCGAG	2 cut(s)	1521, 1578
XmnI	GAANNNNTTC	3 cut(s)	251, 732, 3201
Zsp2I	ATGCAT	1 cut(s)	3017

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.