Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002231

Physical Location & Seq

Genomic Coordinates Forward (+)

31222952 .. 31233157

Gene Structure 10206 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00408710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGATTGTCTTCCTGCAAATACTCAAGGAAATTTTGTACAAGAAGATTATGACAAAAAGCAACTAAGTTATGGGCAGAGTCAACCGAAGAAGCCTAGAGGAAGACCCAGAAAGAAACCAATAAAAGAGCCTCTTGACAATTTAGATGGGGGCAGCAACAATAATTTTGAGGTTCTTGCAATTAAATACCAAAAGGAATCACTGGAGTTGCATTCTACGGATTGTCTTCTTGCAAATACTCAAGTGGACGCTGTACAAGAAGAAACAAGTTGCAAGCAGACTCGATCAAAGAGGCCTAGAGGAATACATGGAAAGAAGCCAATAGAAGAATCTGTTGAAAACTTGGATGACAGCAGCAATACGGGTGAGGCTCTTGATGATCAATATCCAAAGGAATTATTGGAGTTGGAGGGCATGGATTGCGCTCCTGAAGGTACGCAAGGAGATGAGGTACAAGATGATAGTGGTAAGAAAAGAAAAACGTACAGAAAGACTCGAGCAACGATTCCTAGAGAAAAACCTGGAGAGAAGCCAGTAGAATATTCTGTTGATAACTTGCATGGGAGCAGCCATTATGCGGAGGCTCTTGGAGTCCAATATCTCAAGGAAACATCAGAGTTGCATGCTATGGATTGTGTTCCTGCATTTACTCAGGCGCATGATGTACAAGAAGCTCTTAATGAAAAACTTGAAAGTTCCGGACCAGGTCCTCAAACAAATAATAATGTTTCAAATAATGGTTATGCTGAAATTGGCTCAATTAGGTGTTCAGTTCCAAAGGATGTAGCATTGCCAAGAATCATATTCTGCCTAGCTCACCATGGAAAGGTTGCTTGGGATGTGAAATGGCGTCCTCGTAATGAACATGATTCCAGATGCAAGCATCGAATGGGCTATCTTGCTGTTCTGTTGGGGAACGGCTCTCTGGAAGTGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AT_hook

Protein Analysis

312

Amino Acids

34.83

Weight (kDa)

5.76

Isoelectric Point (pI)

30.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002231)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19485 AT1G19485
fragaria_vesca	FvH4_6g18260 FvH4_6g18260 FvH4_6g18260 FvH4_6g18260 FvH4_7g02500
malus_domestica	MD09G1081300.v1.1 MD12G1022600.v1.1
prunus_persica	Prupe.7G114200_v2.0.a1 Prupe.7G114200_v2.0.a1
pyrus_communis	pycom09g00800 pycom12g02090
rosa_chinensis	RchiOBHm_Chr3g0472691 RchiOBHm_Chr3g0472701 RchiOBHm_Chr4g0409331
rosa_laevigata	RLG00000008568 RLG00000016132 RLG00000024063
rosa_multiflora	Rmu_co8285783.1_g000001 Rmu_sc0001616.1_g000052 Rmu_sc0001616.1_g000057 Rmu_sc0001851.1_g000016 Rmu_sc0003510.1_g000010 Rmu_sc0003510.1_g000011 Rmu_sc0003510.1_g000012 Rmu_sc0034965.1_g000001
rosa_roxburghii	Rroxscaffold_5G00353840 Rroxscaffold_6G00408710
rosa_rugosa	Rorug03G0127200 Rorug04G0092400 Rorug04G0092500
rosa_samantha	Rh3AG179900 Rh3BG205800 Rh3CG202900 Rh3DG169900 Rh4AG155600 Rh4BG153800 Rh4CG164600 Rh4DG148500
rosa_wichuraiana	Rw3G016270 Rw4G012710 Rw4G012730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	698
AciI	CCGC	1 cut(s)	578
AcsI	RAATTY	1 cut(s)	31
AcuI	CTGAAG	1 cut(s)	450
AcyI	GRCGYC	1 cut(s)	850
AfaI	GTAC	6 cut(s)	39, 255, 436, 453, 485, 666
AfiI	CCNNNNNNNGG	2 cut(s)	577, 826
AgsI	TTSAA	3 cut(s)	338, 692, 732
AjnI	CCWGG	2 cut(s)	520, 703
AjuI	GAANNNNNNNTTGG	2 cut(s)	817, 849
AluBI	AGCT	2 cut(s)	674, 815
AluI	AGCT	2 cut(s)	674, 815
Ama87I	CYCGRG	1 cut(s)	495
Aor13HI	TCCGGA	1 cut(s)	698
AoxI	GGCC	1 cut(s)	293
ApeKI	GCWGC	3 cut(s)	153, 354, 567
ApoI	RAATTY	1 cut(s)	31
AspLEI	GCGC	2 cut(s)	425, 658
AspS9I	GGNCC	2 cut(s)	701, 707
AsuHPI	GGTGA	2 cut(s)	377, 809
AvaI	CYCGRG	1 cut(s)	495
AvaII	GGWCC	2 cut(s)	701, 707
BbsI	GAAGAC	3 cut(s)	2, 109, 218
BbvI	GCAGC	3 cut(s)	165, 366, 579
BccI	CCATC	1 cut(s)	140
BceAI	ACGGC	1 cut(s)	934
BciT130I	CCWGG	2 cut(s)	522, 705
BclI	TGATCA	1 cut(s)	379
BfaI	CTAG	4 cut(s)	96, 297, 510, 812
BisI	GCNGC	3 cut(s)	154, 355, 568
BlsI	GCNGC	3 cut(s)	155, 356, 569
Bme1390I	CCNGG	2 cut(s)	522, 705
Bme18I	GGWCC	2 cut(s)	701, 707
BmeT110I	CYCGRG	1 cut(s)	495
BmgT120I	GGNCC	2 cut(s)	701, 707
BmrFI	CCNGG	2 cut(s)	522, 705
BmsI	GCATC	2 cut(s)	866, 892
BpiI	GAAGAC	3 cut(s)	2, 109, 218
BpmI	CTGGAG	2 cut(s)	224, 543
BpuEI	CTTGAG	3 cut(s)	9, 225, 587
BsaBI	GATNNNNATC	1 cut(s)	384
BsaHI	GRCGYC	1 cut(s)	850
BsaJI	CCNNGG	1 cut(s)	820
BsaWI	WCCGGW	1 cut(s)	698
BsaXI	ACNNNNNCTCC	2 cut(s)	435, 465
Bsc4I	CCNNNNNNNGG	2 cut(s)	577, 826
Bse1I	ACTGG	2 cut(s)	207, 533
Bse3DI	GCAATG	1 cut(s)	788
Bse8I	GATNNNNATC	1 cut(s)	384
BseAI	TCCGGA	1 cut(s)	698
BseBI	CCWGG	2 cut(s)	522, 705
BseDI	CCNNGG	1 cut(s)	820
BseGI	GGATG	3 cut(s)	352, 787, 844
BseJI	GATNNNNATC	1 cut(s)	384
BseLI	CCNNNNNNNGG	2 cut(s)	577, 826
BseMI	GCAATG	1 cut(s)	788
BseMII	CTCAG	1 cut(s)	665
BseNI	ACTGG	2 cut(s)	207, 533
BseXI	GCAGC	3 cut(s)	165, 366, 579
BshFI	GGCC	1 cut(s)	295
BsiHKCI	CYCGRG	1 cut(s)	495
BsiSI	CCGG	1 cut(s)	699
BslI	CCNNNNNNNGG	2 cut(s)	577, 826
BsmI	GAATGC	1 cut(s)	211
BsnI	GGCC	1 cut(s)	295
BsoBI	CYCGRG	1 cut(s)	495
Bsp13I	TCCGGA	1 cut(s)	698
Bsp1407I	TGTACA	3 cut(s)	37, 253, 664
Bsp143I	GATC	2 cut(s)	284, 379
Bsp19I	CCATGG	1 cut(s)	820
BspACI	CCGC	1 cut(s)	578
BspANI	GGCC	1 cut(s)	295
BspCNI	CTCAG	1 cut(s)	664
BspEI	TCCGGA	1 cut(s)	698
BsrDI	GCAATG	1 cut(s)	788
BsrGI	TGTACA	3 cut(s)	37, 253, 664
BsrI	ACTGG	2 cut(s)	207, 533
BssECI	CCNNGG	1 cut(s)	820
BssMI	GATC	2 cut(s)	284, 379
BssNI	GRCGYC	1 cut(s)	850
BssT1I	CCWWGG	1 cut(s)	820
Bst2UI	CCWGG	2 cut(s)	522, 705
BstACI	GRCGYC	1 cut(s)	850
BstAPI	GCANNNNNTGC	1 cut(s)	420
BstAUI	TGTACA	3 cut(s)	37, 253, 664
BstC8I	GCNNGC	3 cut(s)	275, 624, 881
BstDEI	CTNAG	2 cut(s)	65, 651
BstDSI	CCRYGG	1 cut(s)	820
BstF5I	GGATG	3 cut(s)	352, 787, 844
BstHHI	GCGC	2 cut(s)	425, 658
BstKTI	GATC	2 cut(s)	287, 382
BstMBI	GATC	2 cut(s)	284, 379
BstMWI	GCNNNNNNNGC	1 cut(s)	420
BstNI	CCWGG	2 cut(s)	522, 705
BstNSI	RCATGY	1 cut(s)	626
BstSCI	CCNGG	2 cut(s)	520, 703
BstV1I	GCAGC	3 cut(s)	165, 366, 579
BstV2I	GAAGAC	3 cut(s)	2, 109, 218
BsuRI	GGCC	1 cut(s)	295
BtgI	CCRYGG	1 cut(s)	820
BtsCI	GGATG	3 cut(s)	352, 787, 844
BtsIMutI	CAGTG	1 cut(s)	200
Cac8I	GCNNGC	3 cut(s)	275, 624, 881
CfoI	GCGC	2 cut(s)	425, 658
Cfr13I	GGNCC	2 cut(s)	701, 707
CseI	GACGC	2 cut(s)	257, 839
CsiI	ACCWGGT	1 cut(s)	703
Csp6I	GTAC	6 cut(s)	38, 254, 435, 452, 484, 665
CviAII	CATG	7 cut(s)	308, 415, 560, 623, 659, 821, 866
CviQI	GTAC	6 cut(s)	38, 254, 435, 452, 484, 665
DdeI	CTNAG	2 cut(s)	65, 651
DpnI	GATC	2 cut(s)	286, 381
DpnII	GATC	2 cut(s)	284, 379
Eco130I	CCWWGG	1 cut(s)	820
Eco147I	AGGCCT	1 cut(s)	295
Eco47I	GGWCC	2 cut(s)	701, 707
Eco57I	CTGAAG	1 cut(s)	450
Eco88I	CYCGRG	1 cut(s)	495
EcoO109I	RGGNCCY	1 cut(s)	707
EcoRII	CCWGG	2 cut(s)	520, 703
EcoT14I	CCWWGG	1 cut(s)	820
ErhI	CCWWGG	1 cut(s)	820
FaeI	CATG	7 cut(s)	311, 418, 563, 626, 662, 824, 869
FalI	AAGNNNNNCTT	4 cut(s)	117, 149, 660, 692
FatI	CATG	7 cut(s)	307, 414, 559, 622, 658, 820, 865
FbaI	TGATCA	1 cut(s)	379
Fnu4HI	GCNGC	3 cut(s)	154, 355, 568
FokI	GGATG	3 cut(s)	359, 794, 851
Fsp4HI	GCNGC	3 cut(s)	154, 355, 568
FspBI	CTAG	4 cut(s)	96, 297, 510, 812
GlaI	GCGC	2 cut(s)	424, 657
GluI	GCNGC	3 cut(s)	154, 355, 568
GsuI	CTGGAG	2 cut(s)	224, 543
HaeIII	GGCC	1 cut(s)	295
HapII	CCGG	1 cut(s)	699
HgaI	GACGC	2 cut(s)	257, 839
HhaI	GCGC	2 cut(s)	425, 658
Hin1I	GRCGYC	1 cut(s)	850
Hin1II	CATG	7 cut(s)	311, 418, 563, 626, 662, 824, 869
Hin6I	GCGC	2 cut(s)	423, 656
HinP1I	GCGC	2 cut(s)	423, 656
HincII	GTYRAC	1 cut(s)	83
HindII	GTYRAC	1 cut(s)	83
HinfI	GANTC	9 cut(s)	79, 197, 280, 329, 493, 505, 591, 798, 869
HpaII	CCGG	1 cut(s)	699
HphI	GGTGA	2 cut(s)	377, 809
Hpy166II	GTNNAC	2 cut(s)	83, 247
Hpy188I	TCNGA	1 cut(s)	616
Hpy188III	TCNNGA	6 cut(s)	134, 374, 428, 699, 873, 926
Hpy8I	GTNNAC	2 cut(s)	83, 247
HpyAV	CCTTC	1 cut(s)	425
HpyCH4IV	ACGT	1 cut(s)	482
HpyCH4V	TGCA	9 cut(s)	17, 179, 211, 233, 273, 559, 622, 644, 879
HpyF10VI	GCNNNNNNNGC	1 cut(s)	420
HpyF3I	CTNAG	2 cut(s)	65, 651
HpySE526I	ACGT	1 cut(s)	482
Hsp92I	GRCGYC	1 cut(s)	850
Hsp92II	CATG	7 cut(s)	311, 418, 563, 626, 662, 824, 869
HspAI	GCGC	2 cut(s)	423, 656
Kpn2I	TCCGGA	1 cut(s)	698
Ksp22I	TGATCA	1 cut(s)	379
Kzo9I	GATC	2 cut(s)	284, 379
LmnI	GCTCC	2 cut(s)	430, 564
Lsp1109I	GCAGC	3 cut(s)	165, 366, 579
LweI	GCATC	2 cut(s)	866, 892
MabI	ACCWGGT	1 cut(s)	703
MaeI	CTAG	4 cut(s)	96, 297, 510, 812
MaeII	ACGT	1 cut(s)	482
MalI	GATC	2 cut(s)	286, 381
MboI	GATC	2 cut(s)	284, 379
MboII	GAAGA	6 cut(s)	56, 100, 114, 218, 272, 338
MluCI	AATT	7 cut(s)	31, 139, 163, 180, 395, 750, 759
MlyI	GAGTC	4 cut(s)	88, 274, 487, 600
MmeI	TCCRAC	1 cut(s)	387
MroI	TCCGGA	1 cut(s)	698
MseI	TTAA	2 cut(s)	183, 678
MspI	CCGG	1 cut(s)	699
MspR9I	CCNGG	2 cut(s)	522, 705
Mva1269I	GAATGC	1 cut(s)	211
MvaI	CCWGG	2 cut(s)	522, 705
MwoI	GCNNNNNNNGC	1 cut(s)	420
NcoI	CCATGG	1 cut(s)	820
NdeII	GATC	2 cut(s)	284, 379
NlaIII	CATG	7 cut(s)	311, 418, 563, 626, 662, 824, 869
NspI	RCATGY	1 cut(s)	626
PaeI	GCATGC	1 cut(s)	626
PaeR7I	CTCGAG	1 cut(s)	495
PceI	AGGCCT	1 cut(s)	295
PctI	GAATGC	1 cut(s)	211
PfeI	GAWTC	5 cut(s)	197, 329, 505, 798, 869
PflFI	GACNNNGTC	1 cut(s)	705
PkrI	GCNGC	3 cut(s)	155, 356, 569
PleI	GAGTC	4 cut(s)	87, 274, 487, 599
PpsI	GAGTC	4 cut(s)	87, 274, 487, 599
PpuMI	RGGWCCY	1 cut(s)	707
Psp5II	RGGWCCY	1 cut(s)	707
Psp6I	CCWGG	2 cut(s)	520, 703
PspGI	CCWGG	2 cut(s)	520, 703
PspPI	GGNCC	2 cut(s)	701, 707
PspPPI	RGGWCCY	1 cut(s)	707
PspXI	VCTCGAGB	1 cut(s)	495
PsyI	GACNNNGTC	1 cut(s)	705
RsaI	GTAC	6 cut(s)	39, 255, 436, 453, 485, 666
RsaNI	GTAC	6 cut(s)	38, 254, 435, 452, 484, 665
SaqAI	TTAA	2 cut(s)	183, 678
SatI	GCNGC	3 cut(s)	154, 355, 568
Sau3AI	GATC	2 cut(s)	284, 379
Sau96I	GGNCC	2 cut(s)	701, 707
SchI	GAGTC	4 cut(s)	88, 274, 487, 600
ScrFI	CCNGG	2 cut(s)	522, 705
SexAI	ACCWGGT	1 cut(s)	703
SfaNI	GCATC	2 cut(s)	866, 892
Sfr274I	CTCGAG	1 cut(s)	495
SinI	GGWCC	2 cut(s)	701, 707
SlaI	CTCGAG	1 cut(s)	495
SmlI	CTYRAG	4 cut(s)	24, 240, 495, 602
SmoI	CTYRAG	4 cut(s)	24, 240, 495, 602
SphI	GCATGC	1 cut(s)	626
Sse9I	AATT	7 cut(s)	31, 139, 163, 180, 395, 750, 759
SseBI	AGGCCT	1 cut(s)	295
SsiI	CCGC	1 cut(s)	578
SspI	AATATT	1 cut(s)	542
SspMI	CTAG	4 cut(s)	96, 297, 510, 812
StuI	AGGCCT	1 cut(s)	295
StyD4I	CCNGG	2 cut(s)	520, 703
StyI	CCWWGG	1 cut(s)	820
TaiI	ACGT	1 cut(s)	485
TaqI	TCGA	3 cut(s)	283, 496, 886
TasI	AATT	7 cut(s)	31, 139, 163, 180, 395, 750, 759
TatI	WGTACW	3 cut(s)	37, 253, 664
TfiI	GAWTC	5 cut(s)	197, 329, 505, 798, 869
Tru1I	TTAA	2 cut(s)	183, 678
Tru9I	TTAA	2 cut(s)	183, 678
TscAI	CASTG	1 cut(s)	207
TseI	GCWGC	3 cut(s)	153, 354, 567
TspDTI	ATGAA	2 cut(s)	696, 876
TspGWI	ACGGA	1 cut(s)	233
TspRI	CASTG	1 cut(s)	207
Tth111I	GACNNNGTC	1 cut(s)	705
VpaK11BI	GGWCC	2 cut(s)	701, 707
XapI	RAATTY	1 cut(s)	31
XceI	RCATGY	1 cut(s)	626
XhoI	CTCGAG	1 cut(s)	495
XspI	CTAG	4 cut(s)	96, 297, 510, 812

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.