Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8285783.1

Orthogroup ID

OG0002231

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 859

Gene Structure 859 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8285783.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

cttacgtccaatgctgtggagaaagatgctacacgaaaccgggccccacattttctgtgcgtgtcactaactgaagaggactctgttgtgaccatcaataccccagtaccacataatcctttcccgttgaaaacatctcgtaaagctgagccaaacaaagtgaagagagaacatgataagatgacaactacatcacaagatcaagttttagctctttgttacggtgatgatccgggtattgaattagaatctgggaaagaagcagcatctcttagaagcaaaacactcaaatctgcagatgaccaagcattagtatgcatggatcaagagccatttaatacccaagacgaagaaattggagaaaagggtacatctcttaaaggcattgtaaaacagaaatccaagtctagtaagaaaaatacagaggatgaacaagaactggaaggcagagatgaagagctgattaatacgcagaga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AT_hook

Protein Analysis

159

Amino Acids

17.69

Weight (kDa)

5.09

Isoelectric Point (pI)

47.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002231)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19485 AT1G19485
fragaria_vesca	FvH4_6g18260 FvH4_6g18260 FvH4_6g18260 FvH4_6g18260 FvH4_7g02500
malus_domestica	MD09G1081300.v1.1 MD12G1022600.v1.1
prunus_persica	Prupe.7G114200_v2.0.a1 Prupe.7G114200_v2.0.a1
pyrus_communis	pycom09g00800 pycom12g02090
rosa_chinensis	RchiOBHm_Chr3g0472691 RchiOBHm_Chr3g0472701 RchiOBHm_Chr4g0409331
rosa_laevigata	RLG00000008568 RLG00000016132 RLG00000024063
rosa_multiflora	Rmu_co8285783.1_g000001 Rmu_sc0001616.1_g000052 Rmu_sc0001616.1_g000057 Rmu_sc0001851.1_g000016 Rmu_sc0003510.1_g000010 Rmu_sc0003510.1_g000011 Rmu_sc0003510.1_g000012 Rmu_sc0034965.1_g000001
rosa_roxburghii	Rroxscaffold_5G00353840 Rroxscaffold_6G00408710
rosa_rugosa	Rorug03G0127200 Rorug04G0092400 Rorug04G0092500
rosa_samantha	Rh3AG179900 Rh3BG205800 Rh3CG202900 Rh3DG169900 Rh4AG155600 Rh4BG153800 Rh4CG164600 Rh4DG148500
rosa_wichuraiana	Rw3G016270 Rw4G012710 Rw4G012730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	224, 330
AcuI	CTGAAG	1 cut(s)	93
AfaI	GTAC	2 cut(s)	108, 370
AgsI	TTSAA	2 cut(s)	130, 242
AluBI	AGCT	3 cut(s)	146, 212, 460
AluI	AGCT	3 cut(s)	146, 212, 460
AlwI	GGATC	2 cut(s)	224, 330
AoxI	GGCC	1 cut(s)	42
ApaI	GGGCCC	1 cut(s)	46
ApeKI	GCWGC	1 cut(s)	263
AseI	ATTAAT	1 cut(s)	465
AspS9I	GGNCC	2 cut(s)	42, 43
AsuC2I	CCSGG	2 cut(s)	41, 234
AsuHPI	GGTGA	1 cut(s)	236
BaeGI	GKGCMC	1 cut(s)	46
BaeI	ACNNNNGTAYC	2 cut(s)	90, 123
BanII	GRGCYC	1 cut(s)	46
BbvI	GCAGC	1 cut(s)	275
BccI	CCATC	1 cut(s)	101
BcnI	CCSGG	2 cut(s)	41, 234
BfaI	CTAG	1 cut(s)	408
BfmI	CTRYAG	1 cut(s)	294
BisI	GCNGC	1 cut(s)	264
BlpI	GCTNAGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	265
Bme1390I	CCNGG	2 cut(s)	41, 234
BmgT120I	GGNCC	2 cut(s)	42, 43
BmiI	GGNNCC	2 cut(s)	44, 45
BmrFI	CCNGG	2 cut(s)	41, 234
BmrI	ACTGGG	1 cut(s)	98
BmsI	GCATC	2 cut(s)	16, 275
BmuI	ACTGGG	1 cut(s)	98
Bpu1102I	GCTNAGC	1 cut(s)	147
BpuMI	CCSGG	2 cut(s)	41, 234
Bse1I	ACTGG	2 cut(s)	104, 444
BseGI	GGATG	1 cut(s)	433
BseMII	CTCAG	1 cut(s)	138
BseNI	ACTGG	2 cut(s)	104, 444
BseSI	GKGCMC	1 cut(s)	46
BseXI	GCAGC	1 cut(s)	275
BshFI	GGCC	1 cut(s)	44
BsiSI	CCGG	2 cut(s)	40, 233
BsnI	GGCC	1 cut(s)	44
Bsp120I	GGGCCC	1 cut(s)	42
Bsp1286I	GDGCHC	1 cut(s)	46
Bsp143I	GATC	3 cut(s)	199, 229, 322
Bsp1720I	GCTNAGC	1 cut(s)	147
BspANI	GGCC	1 cut(s)	44
BspCNI	CTCAG	1 cut(s)	139
BspLI	GGNNCC	2 cut(s)	44, 45
BspMAI	CTGCAG	1 cut(s)	298
BspPI	GGATC	2 cut(s)	224, 330
BspQI	GCTCTTC	1 cut(s)	450
BsrI	ACTGG	2 cut(s)	104, 444
BssMI	GATC	3 cut(s)	199, 229, 322
Bst4CI	ACNGT	1 cut(s)	224
Bst6I	CTCTTC	3 cut(s)	69, 158, 450
BstDEI	CTNAG	2 cut(s)	147, 272
BstF5I	GGATG	1 cut(s)	433
BstKTI	GATC	3 cut(s)	202, 232, 325
BstMBI	GATC	3 cut(s)	199, 229, 322
BstSCI	CCNGG	2 cut(s)	39, 232
BstSFI	CTRYAG	1 cut(s)	294
BstSLI	GKGCMC	1 cut(s)	46
BstV1I	GCAGC	1 cut(s)	275
BstXI	CCANNNNNNTGG	1 cut(s)	16
BsuRI	GGCC	1 cut(s)	44
BtsCI	GGATG	1 cut(s)	433
Cfr13I	GGNCC	2 cut(s)	42, 43
Csp6I	GTAC	2 cut(s)	107, 369
CviAII	CATG	2 cut(s)	173, 319
CviJI	RGCY	6 cut(s)	44, 146, 151, 212, 331, 460
CviKI_1	RGCY	6 cut(s)	44, 146, 151, 212, 331, 460
CviQI	GTAC	2 cut(s)	107, 369
DdeI	CTNAG	2 cut(s)	147, 272
DpnI	GATC	3 cut(s)	201, 231, 324
DpnII	GATC	3 cut(s)	199, 229, 322
Eam1104I	CTCTTC	3 cut(s)	69, 158, 450
EarI	CTCTTC	3 cut(s)	69, 158, 450
Eco24I	GRGCYC	1 cut(s)	46
Eco57I	CTGAAG	1 cut(s)	93
EcoO109I	RGGNCCY	1 cut(s)	43
EcoT22I	ATGCAT	1 cut(s)	320
EcoT38I	GRGCYC	1 cut(s)	46
FaeI	CATG	2 cut(s)	176, 322
FaiI	YATR	4 cut(s)	114, 174, 316, 320
FatI	CATG	2 cut(s)	172, 318
Fnu4HI	GCNGC	1 cut(s)	264
FokI	GGATG	1 cut(s)	440
FriOI	GRGCYC	1 cut(s)	46
Fsp4HI	GCNGC	1 cut(s)	264
FspBI	CTAG	1 cut(s)	408
GluI	GCNGC	1 cut(s)	264
HaeIII	GGCC	1 cut(s)	44
HapII	CCGG	2 cut(s)	40, 233
Hin1II	CATG	2 cut(s)	176, 322
HinfI	GANTC	2 cut(s)	80, 248
HpaII	CCGG	2 cut(s)	40, 233
HphI	GGTGA	1 cut(s)	236
Hpy188III	TCNNGA	1 cut(s)	326
HpyAV	CCTTC	1 cut(s)	437
HpyCH4III	ACNGT	1 cut(s)	224
HpyCH4IV	ACGT	1 cut(s)	5
HpyCH4V	TGCA	2 cut(s)	296, 318
HpyF3I	CTNAG	2 cut(s)	147, 272
HpySE526I	ACGT	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	176, 322
Kzo9I	GATC	3 cut(s)	199, 229, 322
LguI	GCTCTTC	1 cut(s)	450
LpnPI	CCDG	5 cut(s)	53, 117, 237, 246, 425
Lsp1109I	GCAGC	1 cut(s)	275
LweI	GCATC	2 cut(s)	16, 275
MaeI	CTAG	1 cut(s)	408
MaeII	ACGT	1 cut(s)	5
MaeIII	GTNAC	3 cut(s)	63, 88, 218
MalI	GATC	3 cut(s)	201, 231, 324
MboI	GATC	3 cut(s)	199, 229, 322
MboII	GAAGA	4 cut(s)	86, 175, 362, 467
MhlI	GDGCHC	1 cut(s)	46
MluCI	AATT	2 cut(s)	242, 354
MlyI	GAGTC	1 cut(s)	74
MnlI	CCTC	2 cut(s)	70, 418
Mph1103I	ATGCAT	1 cut(s)	320
MseI	TTAA	3 cut(s)	336, 378, 465
MslI	CAYNNNNRTG	1 cut(s)	313
MspI	CCGG	2 cut(s)	40, 233
MspR9I	CCNGG	2 cut(s)	41, 234
NciI	CCSGG	2 cut(s)	41, 234
NdeII	GATC	3 cut(s)	199, 229, 322
NlaIII	CATG	2 cut(s)	176, 322
NlaIV	GGNNCC	2 cut(s)	44, 45
NmuCI	GTSAC	2 cut(s)	63, 88
NsiI	ATGCAT	1 cut(s)	320
PciSI	GCTCTTC	1 cut(s)	450
PfeI	GAWTC	1 cut(s)	248
PkrI	GCNGC	1 cut(s)	265
PleI	GAGTC	1 cut(s)	74
PpsI	GAGTC	1 cut(s)	74
PshBI	ATTAAT	1 cut(s)	465
PspN4I	GGNNCC	2 cut(s)	44, 45
PspOMI	GGGCCC	1 cut(s)	42
PspPI	GGNCC	2 cut(s)	42, 43
PstI	CTGCAG	1 cut(s)	298
RsaI	GTAC	2 cut(s)	108, 370
RsaNI	GTAC	2 cut(s)	107, 369
RseI	CAYNNNNRTG	1 cut(s)	313
SapI	GCTCTTC	1 cut(s)	450
SaqAI	TTAA	3 cut(s)	336, 378, 465
SatI	GCNGC	1 cut(s)	264
Sau3AI	GATC	3 cut(s)	199, 229, 322
Sau96I	GGNCC	2 cut(s)	42, 43
SchI	GAGTC	1 cut(s)	74
ScrFI	CCNGG	2 cut(s)	41, 234
SduI	GDGCHC	1 cut(s)	46
SetI	ASST	4 cut(s)	8, 148, 214, 462
SfaNI	GCATC	2 cut(s)	16, 275
SfcI	CTRYAG	1 cut(s)	294
SmiMI	CAYNNNNRTG	1 cut(s)	313
Sse9I	AATT	2 cut(s)	242, 354
SspMI	CTAG	1 cut(s)	408
StyD4I	CCNGG	2 cut(s)	39, 232
TaaI	ACNGT	1 cut(s)	224
TaiI	ACGT	1 cut(s)	8
TasI	AATT	2 cut(s)	242, 354
TfiI	GAWTC	1 cut(s)	248
Tru1I	TTAA	3 cut(s)	336, 378, 465
Tru9I	TTAA	3 cut(s)	336, 378, 465
TseFI	GTSAC	2 cut(s)	63, 88
TseI	GCWGC	1 cut(s)	263
Tsp45I	GTSAC	2 cut(s)	63, 88
TspDTI	ATGAA	2 cut(s)	444, 468
VspI	ATTAAT	1 cut(s)	465
XspI	CTAG	1 cut(s)	408
Zsp2I	ATGCAT	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.