Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001851.1

Orthogroup ID

OG0002231

Physical Location & Seq

Genomic Coordinates Forward (+)

66866 .. 70070

Gene Structure 3205 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001851.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

atgtggaagttttctgctagtaatgtatctcaagatacaaggcctttactttgtttcagcgcagatacaaatcctattagggcgctttcttgggccccagctcaaagcaattcagacaatgcaaatgttatagctactgctggacatggaggcctaaaattttgggacctacgtgatccattccgtcccttgtgggacatcgatcatataccaaggttcatatatagtctggattggattccagatccaaggtgtgttcttctctcctttgatgatggaacaatgaaacttctcagcttgacaaaggctgcctctgatgcccctgtaacaggaaaaccctttgctggaacaaaacaacagggcctgcacaatcttggttgtttgccttttgctatctggagtgttcaagtatcaagactaacaggtatggttgcatattgtggtgcagatggaactgttctgcgcttccaacttacgtccaatgctgtggagaaagatgctacacgaaaccgggccccacattttctgtgcgtgtcactaactgaagaggactctgttgtgaccatcaataccccagtaccacataatcctttcccgttgaaaacatctcgtaaagctgagccaaacaaagtgaagagagaacatgataagatgacaactacatcacaagatcaagttttagctctttgttacggtgatgatccgggtattgaattagaatctgggaaagaagcagcatctcttagaagcaaaacactcaaatctgcagatgaccaagcattagtatgcatggatcaagagccatttaatacccaagacgaagaaattggagaaaagggtacatctcttaaaggcattgtaaaacagaaatccaagtctagtaagaaaaatacagaggatgaacaagaactggaaggcagagatgaagagctgattaatacgcagagagaaaaaactgggactgagtatgaagtttttccttccaagcaagtagcaatgcaccgagtgagatggaacatgaacaagggtagtgagaggtggttatgctatggaggggcagctggaatagtacgttgtcaagagattgttttgtctgacattgatatgaaatgggcaaggaagaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AT_hook

Protein Analysis

375

Amino Acids

41.82

Weight (kDa)

6.42

Isoelectric Point (pI)

40.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002231)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19485 AT1G19485
fragaria_vesca	FvH4_6g18260 FvH4_6g18260 FvH4_6g18260 FvH4_6g18260 FvH4_7g02500
malus_domestica	MD09G1081300.v1.1 MD12G1022600.v1.1
prunus_persica	Prupe.7G114200_v2.0.a1 Prupe.7G114200_v2.0.a1
pyrus_communis	pycom09g00800 pycom12g02090
rosa_chinensis	RchiOBHm_Chr3g0472691 RchiOBHm_Chr3g0472701 RchiOBHm_Chr4g0409331
rosa_laevigata	RLG00000008568 RLG00000016132 RLG00000024063
rosa_multiflora	Rmu_co8285783.1_g000001 Rmu_sc0001616.1_g000052 Rmu_sc0001616.1_g000057 Rmu_sc0001851.1_g000016 Rmu_sc0003510.1_g000010 Rmu_sc0003510.1_g000011 Rmu_sc0003510.1_g000012 Rmu_sc0034965.1_g000001
rosa_roxburghii	Rroxscaffold_5G00353840 Rroxscaffold_6G00408710
rosa_rugosa	Rorug03G0127200 Rorug04G0092400 Rorug04G0092500
rosa_samantha	Rh3AG179900 Rh3BG205800 Rh3CG202900 Rh3DG169900 Rh4AG155600 Rh4BG153800 Rh4CG164600 Rh4DG148500
rosa_wichuraiana	Rw3G016270 Rw4G012710 Rw4G012730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	170, 239, 695, 801
AcsI	RAATTY	1 cut(s)	158
AcuI	CTGAAG	1 cut(s)	564
AdeI	CACNNNGTG	1 cut(s)	1006
AfaI	GTAC	3 cut(s)	579, 841, 1071
AfiI	CCNNNNNNNGG	2 cut(s)	329, 344
AgsI	TTSAA	3 cut(s)	407, 601, 713
AluBI	AGCT	7 cut(s)	101, 134, 297, 617, 683, 931, 1061
AluI	AGCT	7 cut(s)	101, 134, 297, 617, 683, 931, 1061
AlwI	GGATC	4 cut(s)	170, 239, 695, 801
AlwNI	CAGNNNCTG	1 cut(s)	364
AoxI	GGCC	5 cut(s)	41, 93, 151, 361, 513
ApaI	GGGCCC	2 cut(s)	97, 517
ApeKI	GCWGC	3 cut(s)	308, 734, 1058
ApoI	RAATTY	1 cut(s)	158
AseI	ATTAAT	1 cut(s)	936
Asp700I	GAANNNNTTC	1 cut(s)	975
AspLEI	GCGC	3 cut(s)	62, 85, 465
AspS9I	GGNCC	6 cut(s)	93, 94, 166, 361, 513, 514
AsuC2I	CCSGG	2 cut(s)	512, 705
AsuHPI	GGTGA	1 cut(s)	707
AvaII	GGWCC	1 cut(s)	166
BaeGI	GKGCMC	2 cut(s)	97, 517
BaeI	ACNNNNGTAYC	2 cut(s)	561, 594
BanII	GRGCYC	2 cut(s)	97, 517
BbvI	GCAGC	3 cut(s)	295, 746, 1070
BccI	CCATC	4 cut(s)	269, 443, 572, 1005
BcnI	CCSGG	2 cut(s)	512, 705
BfaI	CTAG	2 cut(s)	18, 879
BfmI	CTRYAG	1 cut(s)	765
BfoI	RGCGCY	1 cut(s)	86
BisI	GCNGC	3 cut(s)	309, 735, 1059
BlpI	GCTNAGC	1 cut(s)	618
BlsI	GCNGC	3 cut(s)	310, 736, 1060
Bme1390I	CCNGG	2 cut(s)	512, 705
Bme18I	GGWCC	1 cut(s)	166
BmgT120I	GGNCC	6 cut(s)	93, 94, 166, 361, 513, 514
BmiI	GGNNCC	5 cut(s)	95, 96, 167, 515, 516
BmrFI	CCNGG	2 cut(s)	512, 705
BmrI	ACTGGG	2 cut(s)	569, 966
BmsI	GCATC	3 cut(s)	307, 487, 746
BmuI	ACTGGG	2 cut(s)	569, 966
BpmI	CTGGAG	1 cut(s)	418
Bpu1102I	GCTNAGC	1 cut(s)	618
BpuEI	CTTGAG	1 cut(s)	15
BpuMI	CCSGG	2 cut(s)	512, 705
Bsa29I	ATCGAT	1 cut(s)	201
BsaAI	YACGTR	1 cut(s)	173
BsaBI	GATNNNNATC	1 cut(s)	69
BsaJI	CCNNGG	2 cut(s)	212, 248
Bsc4I	CCNNNNNNNGG	2 cut(s)	329, 344
Bse1I	ACTGG	3 cut(s)	575, 915, 961
Bse3DI	GCAATG	1 cut(s)	1002
Bse8I	GATNNNNATC	1 cut(s)	69
BseCI	ATCGAT	1 cut(s)	201
BseDI	CCNNGG	2 cut(s)	212, 248
BseGI	GGATG	1 cut(s)	904
BseJI	GATNNNNATC	1 cut(s)	69
BseLI	CCNNNNNNNGG	2 cut(s)	329, 344
BseMI	GCAATG	1 cut(s)	1002
BseMII	CTCAG	3 cut(s)	307, 609, 954
BseNI	ACTGG	3 cut(s)	575, 915, 961
BseSI	GKGCMC	2 cut(s)	97, 517
BseXI	GCAGC	3 cut(s)	295, 746, 1070
BseYI	CCCAGC	1 cut(s)	97
BsgI	GTGCAG	2 cut(s)	350, 465
BshFI	GGCC	5 cut(s)	43, 95, 153, 363, 515
BshVI	ATCGAT	1 cut(s)	201
BsiSI	CCGG	2 cut(s)	511, 704
BslFI	GGGAC	4 cut(s)	171, 179, 209, 973
BslI	CCNNNNNNNGG	2 cut(s)	329, 344
BsmFI	GGGAC	4 cut(s)	171, 179, 209, 973
BsnI	GGCC	5 cut(s)	43, 95, 153, 363, 515
Bsp120I	GGGCCC	2 cut(s)	93, 513
Bsp1286I	GDGCHC	2 cut(s)	97, 517
Bsp143I	GATC	6 cut(s)	175, 202, 244, 670, 700, 793
Bsp1720I	GCTNAGC	1 cut(s)	618
BspANI	GGCC	5 cut(s)	43, 95, 153, 363, 515
BspCNI	CTCAG	3 cut(s)	306, 610, 955
BspDI	ATCGAT	1 cut(s)	201
BspLI	GGNNCC	5 cut(s)	95, 96, 167, 515, 516
BspMAI	CTGCAG	1 cut(s)	769
BspPI	GGATC	4 cut(s)	170, 239, 695, 801
BspQI	GCTCTTC	1 cut(s)	921
BsrDI	GCAATG	1 cut(s)	1002
BsrI	ACTGG	3 cut(s)	575, 915, 961
BssECI	CCNNGG	2 cut(s)	212, 248
BssMI	GATC	6 cut(s)	175, 202, 244, 670, 700, 793
BssT1I	CCWWGG	2 cut(s)	212, 248
Bst4CI	ACNGT	2 cut(s)	457, 695
Bst6I	CTCTTC	3 cut(s)	540, 629, 921
BstBAI	YACGTR	1 cut(s)	173
BstC8I	GCNNGC	1 cut(s)	365
BstDEI	CTNAG	4 cut(s)	293, 618, 743, 963
BstENI	CCTNNNNNAGG	1 cut(s)	327
BstF5I	GGATG	1 cut(s)	904
BstH2I	RGCGCY	1 cut(s)	86
BstHHI	GCGC	3 cut(s)	62, 85, 465
BstKTI	GATC	6 cut(s)	178, 205, 247, 673, 703, 796
BstMBI	GATC	6 cut(s)	175, 202, 244, 670, 700, 793
BstMWI	GCNNNNNNNGC	1 cut(s)	317
BstSCI	CCNGG	2 cut(s)	510, 703
BstSFI	CTRYAG	1 cut(s)	765
BstSLI	GKGCMC	2 cut(s)	97, 517
BstV1I	GCAGC	3 cut(s)	295, 746, 1070
BstX2I	RGATCY	1 cut(s)	244
BstXI	CCANNNNNNTGG	1 cut(s)	487
BstYI	RGATCY	1 cut(s)	244
Bsu15I	ATCGAT	1 cut(s)	201
BsuRI	GGCC	5 cut(s)	43, 95, 153, 363, 515
BsuTUI	ATCGAT	1 cut(s)	201
BtsCI	GGATG	1 cut(s)	904
Cac8I	GCNNGC	1 cut(s)	365
CaiI	CAGNNNCTG	1 cut(s)	364
CfoI	GCGC	3 cut(s)	62, 85, 465
Cfr13I	GGNCC	6 cut(s)	93, 94, 166, 361, 513, 514
ClaI	ATCGAT	1 cut(s)	201
Csp6I	GTAC	3 cut(s)	578, 840, 1070
CviAII	CATG	4 cut(s)	146, 644, 790, 1018
CviQI	GTAC	3 cut(s)	578, 840, 1070
DdeI	CTNAG	4 cut(s)	293, 618, 743, 963
DpnI	GATC	6 cut(s)	177, 204, 246, 672, 702, 795
DpnII	GATC	6 cut(s)	175, 202, 244, 670, 700, 793
DraIII	CACNNNGTG	1 cut(s)	1006
Eam1104I	CTCTTC	3 cut(s)	540, 629, 921
EarI	CTCTTC	3 cut(s)	540, 629, 921
Eco130I	CCWWGG	2 cut(s)	212, 248
Eco147I	AGGCCT	2 cut(s)	43, 153
Eco24I	GRGCYC	2 cut(s)	97, 517
Eco47I	GGWCC	1 cut(s)	166
Eco57I	CTGAAG	1 cut(s)	564
EcoNI	CCTNNNNNAGG	1 cut(s)	327
EcoO109I	RGGNCCY	4 cut(s)	94, 166, 361, 514
EcoT14I	CCWWGG	2 cut(s)	212, 248
EcoT22I	ATGCAT	1 cut(s)	791
EcoT38I	GRGCYC	2 cut(s)	97, 517
ErhI	CCWWGG	2 cut(s)	212, 248
FaeI	CATG	4 cut(s)	149, 647, 793, 1021
FaqI	GGGAC	4 cut(s)	171, 179, 209, 973
FatI	CATG	4 cut(s)	145, 643, 789, 1017
Fnu4HI	GCNGC	3 cut(s)	309, 735, 1059
FokI	GGATG	1 cut(s)	911
FriOI	GRGCYC	2 cut(s)	97, 517
Fsp4HI	GCNGC	3 cut(s)	309, 735, 1059
FspBI	CTAG	2 cut(s)	18, 879
GlaI	GCGC	3 cut(s)	61, 84, 464
GluI	GCNGC	3 cut(s)	309, 735, 1059
GsaI	CCCAGC	1 cut(s)	101
GsuI	CTGGAG	1 cut(s)	418
HaeII	RGCGCY	1 cut(s)	86
HaeIII	GGCC	5 cut(s)	43, 95, 153, 363, 515
HapII	CCGG	2 cut(s)	511, 704
HhaI	GCGC	3 cut(s)	62, 85, 465
Hin1II	CATG	4 cut(s)	149, 647, 793, 1021
Hin6I	GCGC	3 cut(s)	60, 83, 463
HinP1I	GCGC	3 cut(s)	60, 83, 463
HinfI	GANTC	3 cut(s)	238, 551, 719
HpaII	CCGG	2 cut(s)	511, 704
HphI	GGTGA	1 cut(s)	707
Hpy188I	TCNGA	3 cut(s)	115, 316, 1096
Hpy188III	TCNNGA	7 cut(s)	32, 230, 242, 397, 414, 797, 1079
HpyAV	CCTTC	2 cut(s)	908, 990
HpyCH4III	ACNGT	2 cut(s)	457, 695
HpyCH4IV	ACGT	3 cut(s)	172, 476, 1072
HpyCH4V	TGCA	7 cut(s)	122, 367, 434, 446, 767, 789, 1000
HpyF10VI	GCNNNNNNNGC	1 cut(s)	317
HpyF3I	CTNAG	4 cut(s)	293, 618, 743, 963
HpySE526I	ACGT	3 cut(s)	172, 476, 1072
Hsp92II	CATG	4 cut(s)	149, 647, 793, 1021
HspAI	GCGC	3 cut(s)	60, 83, 463
Kzo9I	GATC	6 cut(s)	175, 202, 244, 670, 700, 793
LguI	GCTCTTC	1 cut(s)	921
Lsp1109I	GCAGC	3 cut(s)	295, 746, 1070
LweI	GCATC	3 cut(s)	307, 487, 746
MaeI	CTAG	2 cut(s)	18, 879
MaeII	ACGT	3 cut(s)	172, 476, 1072
MaeIII	GTNAC	4 cut(s)	325, 534, 559, 689
MalI	GATC	6 cut(s)	177, 204, 246, 672, 702, 795
MboI	GATC	6 cut(s)	175, 202, 244, 670, 700, 793
MboII	GAAGA	5 cut(s)	251, 557, 646, 833, 938
MflI	RGATCY	1 cut(s)	244
MhlI	GDGCHC	2 cut(s)	97, 517
MluCI	AATT	4 cut(s)	109, 158, 713, 825
MlyI	GAGTC	1 cut(s)	545
MmeI	TCCRAC	1 cut(s)	493
MnlI	CCTC	6 cut(s)	143, 322, 541, 889, 1029, 1046
Mph1103I	ATGCAT	1 cut(s)	791
MroXI	GAANNNNTTC	1 cut(s)	975
MseI	TTAA	3 cut(s)	807, 849, 936
MslI	CAYNNNNRTG	2 cut(s)	784, 1103
MspA1I	CMGCKG	1 cut(s)	1061
MspI	CCGG	2 cut(s)	511, 704
MspR9I	CCNGG	2 cut(s)	512, 705
MwoI	GCNNNNNNNGC	1 cut(s)	317
NciI	CCSGG	2 cut(s)	512, 705
NdeII	GATC	6 cut(s)	175, 202, 244, 670, 700, 793
NlaIII	CATG	4 cut(s)	149, 647, 793, 1021
NlaIV	GGNNCC	5 cut(s)	95, 96, 167, 515, 516
NmuCI	GTSAC	2 cut(s)	534, 559
NsiI	ATGCAT	1 cut(s)	791
PceI	AGGCCT	2 cut(s)	43, 153
PciSI	GCTCTTC	1 cut(s)	921
PdmI	GAANNNNTTC	1 cut(s)	975
PfeI	GAWTC	2 cut(s)	238, 719
PkrI	GCNGC	3 cut(s)	310, 736, 1060
PleI	GAGTC	1 cut(s)	545
PpsI	GAGTC	1 cut(s)	545
Ppu21I	YACGTR	1 cut(s)	173
PpuMI	RGGWCCY	1 cut(s)	166
PshBI	ATTAAT	1 cut(s)	936
Psp5II	RGGWCCY	1 cut(s)	166
PspFI	CCCAGC	1 cut(s)	97
PspN4I	GGNNCC	5 cut(s)	95, 96, 167, 515, 516
PspOMI	GGGCCC	2 cut(s)	93, 513
PspPI	GGNCC	6 cut(s)	93, 94, 166, 361, 513, 514
PspPPI	RGGWCCY	1 cut(s)	166
PstI	CTGCAG	1 cut(s)	769
PstNI	CAGNNNCTG	1 cut(s)	364
PsuI	RGATCY	1 cut(s)	244
PvuII	CAGCTG	1 cut(s)	1061
RsaI	GTAC	3 cut(s)	579, 841, 1071
RsaNI	GTAC	3 cut(s)	578, 840, 1070
RseI	CAYNNNNRTG	2 cut(s)	784, 1103
SapI	GCTCTTC	1 cut(s)	921
SaqAI	TTAA	3 cut(s)	807, 849, 936
SatI	GCNGC	3 cut(s)	309, 735, 1059
Sau3AI	GATC	6 cut(s)	175, 202, 244, 670, 700, 793
Sau96I	GGNCC	6 cut(s)	93, 94, 166, 361, 513, 514
SchI	GAGTC	1 cut(s)	545
ScrFI	CCNGG	2 cut(s)	512, 705
SduI	GDGCHC	2 cut(s)	97, 517
SfaNI	GCATC	3 cut(s)	307, 487, 746
SfcI	CTRYAG	1 cut(s)	765
SinI	GGWCC	1 cut(s)	166
SmiMI	CAYNNNNRTG	2 cut(s)	784, 1103
SmlI	CTYRAG	1 cut(s)	30
SmoI	CTYRAG	1 cut(s)	30
Sse9I	AATT	4 cut(s)	109, 158, 713, 825
SseBI	AGGCCT	2 cut(s)	43, 153
SspMI	CTAG	2 cut(s)	18, 879
StuI	AGGCCT	2 cut(s)	43, 153
StyD4I	CCNGG	2 cut(s)	510, 703
StyI	CCWWGG	2 cut(s)	212, 248
TaaI	ACNGT	2 cut(s)	457, 695
TaiI	ACGT	3 cut(s)	175, 479, 1075
TaqI	TCGA	1 cut(s)	201
TasI	AATT	4 cut(s)	109, 158, 713, 825
TfiI	GAWTC	2 cut(s)	238, 719
Tru1I	TTAA	3 cut(s)	807, 849, 936
Tru9I	TTAA	3 cut(s)	807, 849, 936
TseFI	GTSAC	2 cut(s)	534, 559
TseI	GCWGC	3 cut(s)	308, 734, 1058
Tsp45I	GTSAC	2 cut(s)	534, 559
TspDTI	ATGAA	7 cut(s)	208, 299, 915, 939, 984, 1034, 1121
TspGWI	ACGGA	1 cut(s)	173
VpaK11BI	GGWCC	1 cut(s)	166
VspI	ATTAAT	1 cut(s)	936
XagI	CCTNNNNNAGG	1 cut(s)	327
XapI	RAATTY	1 cut(s)	158
XmnI	GAANNNNTTC	1 cut(s)	975
XspI	CTAG	2 cut(s)	18, 879
Zsp2I	ATGCAT	1 cut(s)	791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.