Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001616.1

Orthogroup ID

OG0002231

Physical Location & Seq

Genomic Coordinates Reverse (-)

261999 .. 262781

Gene Structure 783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001616.1_g000052.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

atgaatgaagaggaagtggaacctccactcggggttctattgggtcgaaaagcagttcaaattgagccgaagccagttgcaattgagccagagaactcaaggaatggcgctagggttagtgtttcgaggttcgatgactcggtggagaatcacttcagagtcatgcacacgatttccgagctctgtggtgacgccaaagacgagccactcccggtgagtgacattcaacgcttatcgtcctccaccactttcctgagggaatgggcagattttaagtatgaacctagagatgttcgattcgctcgcgatgcagaaagctttgatgaggaggatgttgtcagtaggataaacttgcggcagctttcttctgcaactattccacagaacgaggcgggggacacatcttctctagagttgaggtacttgattgagcctaattcagtactatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AT_hook

Protein Analysis

149

Amino Acids

16.84

Weight (kDa)

4.59

Isoelectric Point (pI)

57.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002231)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19485 AT1G19485
fragaria_vesca	FvH4_6g18260 FvH4_6g18260 FvH4_6g18260 FvH4_6g18260 FvH4_7g02500
malus_domestica	MD09G1081300.v1.1 MD12G1022600.v1.1
prunus_persica	Prupe.7G114200_v2.0.a1 Prupe.7G114200_v2.0.a1
pyrus_communis	pycom09g00800 pycom12g02090
rosa_chinensis	RchiOBHm_Chr3g0472691 RchiOBHm_Chr3g0472701 RchiOBHm_Chr4g0409331
rosa_laevigata	RLG00000008568 RLG00000016132 RLG00000024063
rosa_multiflora	Rmu_co8285783.1_g000001 Rmu_sc0001616.1_g000052 Rmu_sc0001616.1_g000057 Rmu_sc0001851.1_g000016 Rmu_sc0003510.1_g000010 Rmu_sc0003510.1_g000011 Rmu_sc0003510.1_g000012 Rmu_sc0034965.1_g000001
rosa_roxburghii	Rroxscaffold_5G00353840 Rroxscaffold_6G00408710
rosa_rugosa	Rorug03G0127200 Rorug04G0092400 Rorug04G0092500
rosa_samantha	Rh3AG179900 Rh3BG205800 Rh3CG202900 Rh3DG169900 Rh4AG155600 Rh4BG153800 Rh4CG164600 Rh4DG148500
rosa_wichuraiana	Rw3G016270 Rw4G012710 Rw4G012730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	306
AciI	CCGC	2 cut(s)	355, 392
AcuI	CTGAAG	1 cut(s)	139
AcyI	GRCGYC	1 cut(s)	192
AfaI	GTAC	2 cut(s)	422, 444
AfiI	CCNNNNNNNGG	1 cut(s)	29
AgsI	TTSAA	2 cut(s)	59, 227
AluBI	AGCT	3 cut(s)	181, 318, 361
AluI	AGCT	3 cut(s)	181, 318, 361
Alw21I	GWGCWC	1 cut(s)	183
Ama87I	CYCGRG	1 cut(s)	29
ApeKI	GCWGC	1 cut(s)	358
Asp700I	GAANNNNTTC	1 cut(s)	152
AspLEI	GCGC	1 cut(s)	110
AsuC2I	CCSGG	1 cut(s)	212
AsuHPI	GGTGA	2 cut(s)	200, 226
AvaI	CYCGRG	1 cut(s)	29
AxyI	CCTNAGG	1 cut(s)	254
BanII	GRGCYC	1 cut(s)	183
Bbv12I	GWGCWC	1 cut(s)	183
BbvI	GCAGC	1 cut(s)	370
BcnI	CCSGG	1 cut(s)	212
BfaI	CTAG	3 cut(s)	111, 285, 410
BfmI	CTRYAG	1 cut(s)	446
BfoI	RGCGCY	1 cut(s)	111
BisI	GCNGC	2 cut(s)	356, 359
BlsI	GCNGC	2 cut(s)	357, 360
BmcAI	AGTACT	1 cut(s)	444
Bme1390I	CCNGG	1 cut(s)	212
BmeT110I	CYCGRG	1 cut(s)	29
BmiI	GGNNCC	1 cut(s)	21
BmrFI	CCNGG	1 cut(s)	212
BmsI	GCATC	1 cut(s)	298
BpuEI	CTTGAG	1 cut(s)	82
BpuMI	CCSGG	1 cut(s)	212
BsaHI	GRCGYC	1 cut(s)	192
Bsc4I	CCNNNNNNNGG	1 cut(s)	29
Bse1I	ACTGG	1 cut(s)	74
Bse21I	CCTNAGG	1 cut(s)	254
BseGI	GGATG	1 cut(s)	337
BseLI	CCNNNNNNNGG	1 cut(s)	29
BseMII	CTCAG	1 cut(s)	245
BseNI	ACTGG	1 cut(s)	74
BseRI	GAGGAG	1 cut(s)	341
BseXI	GCAGC	1 cut(s)	370
Bsh1236I	CGCG	1 cut(s)	306
BsiHKAI	GWGCWC	1 cut(s)	183
BsiHKCI	CYCGRG	1 cut(s)	29
BsiSI	CCGG	1 cut(s)	212
BslFI	GGGAC	1 cut(s)	410
BslI	CCNNNNNNNGG	1 cut(s)	29
BsmFI	GGGAC	1 cut(s)	410
BsoBI	CYCGRG	1 cut(s)	29
Bsp1286I	GDGCHC	1 cut(s)	183
Bsp68I	TCGCGA	1 cut(s)	306
BspACI	CCGC	2 cut(s)	355, 392
BspCNI	CTCAG	1 cut(s)	246
BspFNI	CGCG	1 cut(s)	306
BspLI	GGNNCC	1 cut(s)	21
BsrI	ACTGG	1 cut(s)	74
BssNI	GRCGYC	1 cut(s)	192
Bst6I	CTCTTC	1 cut(s)	3
BstACI	GRCGYC	1 cut(s)	192
BstC8I	GCNNGC	1 cut(s)	304
BstDEI	CTNAG	1 cut(s)	254
BstF5I	GGATG	1 cut(s)	337
BstFNI	CGCG	1 cut(s)	306
BstH2I	RGCGCY	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	110
BstMWI	GCNNNNNNNGC	1 cut(s)	308
BstSCI	CCNGG	1 cut(s)	210
BstSFI	CTRYAG	1 cut(s)	446
BstUI	CGCG	1 cut(s)	306
BstV1I	GCAGC	1 cut(s)	370
Bsu36I	CCTNAGG	1 cut(s)	254
BtgZI	GCGATG	1 cut(s)	321
BtsCI	GGATG	1 cut(s)	337
BtuMI	TCGCGA	1 cut(s)	306
Cac8I	GCNNGC	1 cut(s)	304
CfoI	GCGC	1 cut(s)	110
CseI	GACGC	1 cut(s)	200
Csp6I	GTAC	2 cut(s)	421, 443
CviAII	CATG	1 cut(s)	163
CviJI	RGCY	8 cut(s)	67, 73, 88, 181, 205, 318, 361, 433
CviKI_1	RGCY	8 cut(s)	67, 73, 88, 181, 205, 318, 361, 433
CviQI	GTAC	2 cut(s)	421, 443
DdeI	CTNAG	1 cut(s)	254
Eam1104I	CTCTTC	1 cut(s)	3
EarI	CTCTTC	1 cut(s)	3
Ecl136II	GAGCTC	1 cut(s)	181
Eco24I	GRGCYC	1 cut(s)	183
Eco53kI	GAGCTC	1 cut(s)	181
Eco57I	CTGAAG	1 cut(s)	139
Eco81I	CCTNAGG	1 cut(s)	254
Eco88I	CYCGRG	1 cut(s)	29
EcoICRI	GAGCTC	1 cut(s)	181
EcoT38I	GRGCYC	1 cut(s)	183
FaeI	CATG	1 cut(s)	166
FaiI	YATR	3 cut(s)	164, 279, 448
FaqI	GGGAC	1 cut(s)	410
FatI	CATG	1 cut(s)	162
FauI	CCCGC	1 cut(s)	385
Fnu4HI	GCNGC	2 cut(s)	356, 359
FokI	GGATG	1 cut(s)	344
FriOI	GRGCYC	1 cut(s)	183
Fsp4HI	GCNGC	2 cut(s)	356, 359
FspBI	CTAG	3 cut(s)	111, 285, 410
GlaI	GCGC	1 cut(s)	109
GluI	GCNGC	2 cut(s)	356, 359
HaeII	RGCGCY	1 cut(s)	111
HapII	CCGG	1 cut(s)	212
HgaI	GACGC	1 cut(s)	200
HhaI	GCGC	1 cut(s)	110
Hin1I	GRCGYC	1 cut(s)	192
Hin1II	CATG	1 cut(s)	166
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HindIII	AAGCTT	1 cut(s)	316
HinfI	GANTC	4 cut(s)	137, 148, 159, 297
HpaII	CCGG	1 cut(s)	212
HphI	GGTGA	2 cut(s)	200, 226
Hpy188I	TCNGA	2 cut(s)	158, 178
Hpy188III	TCNNGA	3 cut(s)	253, 305, 410
HpyCH4V	TGCA	4 cut(s)	80, 166, 311, 371
HpyF10VI	GCNNNNNNNGC	1 cut(s)	308
HpyF3I	CTNAG	1 cut(s)	254
Hsp92I	GRCGYC	1 cut(s)	192
Hsp92II	CATG	1 cut(s)	166
HspAI	GCGC	1 cut(s)	108
LpnPI	CCDG	4 cut(s)	87, 102, 225, 266
Lsp1109I	GCAGC	1 cut(s)	370
LweI	GCATC	1 cut(s)	298
MaeI	CTAG	3 cut(s)	111, 285, 410
MaeIII	GTNAC	2 cut(s)	188, 218
MboII	GAAGA	3 cut(s)	20, 357, 396
MfeI	CAATTG	1 cut(s)	81
MhlI	GDGCHC	1 cut(s)	183
MluCI	AATT	3 cut(s)	60, 81, 436
MlyI	GAGTC	2 cut(s)	131, 168
MnlI	CCTC	9 cut(s)	4, 33, 120, 249, 250, 319, 322, 382, 411
MroXI	GAANNNNTTC	1 cut(s)	152
MseI	TTAA	1 cut(s)	273
MspI	CCGG	1 cut(s)	212
MspR9I	CCNGG	1 cut(s)	212
MunI	CAATTG	1 cut(s)	81
MvnI	CGCG	1 cut(s)	306
MwoI	GCNNNNNNNGC	1 cut(s)	308
NciI	CCSGG	1 cut(s)	212
NlaIII	CATG	1 cut(s)	166
NlaIV	GGNNCC	1 cut(s)	21
NmuCI	GTSAC	2 cut(s)	188, 218
NruI	TCGCGA	1 cut(s)	306
PcsI	WCGNNNNNNNCGW	1 cut(s)	198
PdmI	GAANNNNTTC	1 cut(s)	152
PfeI	GAWTC	2 cut(s)	148, 297
PkrI	GCNGC	2 cut(s)	357, 360
PleI	GAGTC	2 cut(s)	131, 167
PpsI	GAGTC	2 cut(s)	131, 167
Psp124BI	GAGCTC	1 cut(s)	183
PspN4I	GGNNCC	1 cut(s)	21
RruI	TCGCGA	1 cut(s)	306
RsaI	GTAC	2 cut(s)	422, 444
RsaNI	GTAC	2 cut(s)	421, 443
SacI	GAGCTC	1 cut(s)	183
SaqAI	TTAA	1 cut(s)	273
SatI	GCNGC	2 cut(s)	356, 359
ScaI	AGTACT	1 cut(s)	444
SchI	GAGTC	2 cut(s)	131, 168
ScrFI	CCNGG	1 cut(s)	212
SduI	GDGCHC	1 cut(s)	183
SetI	ASST	7 cut(s)	25, 131, 183, 286, 320, 363, 422
SfaNI	GCATC	1 cut(s)	298
SfcI	CTRYAG	1 cut(s)	446
SmlI	CTYRAG	1 cut(s)	97
SmoI	CTYRAG	1 cut(s)	97
Sse9I	AATT	3 cut(s)	60, 81, 436
SsiI	CCGC	2 cut(s)	355, 392
SspMI	CTAG	3 cut(s)	111, 285, 410
SstI	GAGCTC	1 cut(s)	183
StyD4I	CCNGG	1 cut(s)	210
TaqI	TCGA	4 cut(s)	46, 125, 132, 295
TasI	AATT	3 cut(s)	60, 81, 436
TatI	WGTACW	1 cut(s)	442
TauI	GCSGC	1 cut(s)	358
TfiI	GAWTC	2 cut(s)	148, 297
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TseFI	GTSAC	2 cut(s)	188, 218
TseI	GCWGC	1 cut(s)	358
Tsp45I	GTSAC	2 cut(s)	188, 218
TspDTI	ATGAA	3 cut(s)	17, 21, 294
XbaI	TCTAGA	1 cut(s)	409
XmnI	GAANNNNTTC	1 cut(s)	152
XspI	CTAG	3 cut(s)	111, 285, 410
ZrmI	AGTACT	1 cut(s)	444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.