Rmu_sc0003510.1_g000011

WD40 repeats

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003510.1
OG0002231
Physical Location & Seq
Forward (+)
32974 .. 36919
3946 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003510.1_g000011.1.cds

Sequence Viewer

Length: 969 bp
atgcaactaagttatgggcagagtcaaccgaagaagcctagaggaagacccagaaagaagccaataaaagagcctgttgacaatttagataggggtagcaacaataattttgaggttcttgcaattgaataccaaaaggaatcactggagttgccttctacggattgtcttcttgcaaatactcaagtggacgctgtacaagaagaaacaagttaccagcaaactcgatcaaagaggcctagaggaatacatggaaagaagccaatagaagaatctgttgaaaacttggatgacagcagcaatacgggtgaggctcttgatgatcaatatccaaaggaattattggagttggagggcatggattgctctcctgaaagtactcaaggagatgagttacaagatgatagtggtaagaaaagaaaaacgtacagaaagactcgagcaaagattcctagagaaaaacctggtgagaagctagtagaatattctgttgataacttgcatgggagcagccattatgcggaggctcttagagtccaatatctcaaggaaacatcagagttgcatgctatggattgtgttcctgcatttactcaggcgcatgatgtacaagaagctcttaatgaaaaacttgaaagtttcggaccggatgcgaaatggcatcgaatgggctatcttgctgttctattggggaacgggtctctggaagtgtgggaggttcctgttcctcgtgcaattgaagttatttattcttcttcatctggagagggcactgatcctcgttttgtaaaattggcaccagtatttagatgctcaatgttgaagtctggtgacaaaaaaagcatccctcttactgtggaatggtcagcttcaccacctcacgattacttaattgccggatgccatgatggaactgtaactcttcctgctccttgtcattgttgtttaatgttctgctcgaatatttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AT_hook

Protein Analysis

322

Amino Acids

36.01

Weight (kDa)

5.49

Isoelectric Point (pI)

38.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 796
AciI CCGC 1 cut(s) 521
AclWI GGATC 1 cut(s) 770
AfaI GTAC 4 cut(s) 198, 379, 428, 609
AfiI CCNNNNNNNGG 1 cut(s) 520
AgsI TTSAA 5 cut(s) 128, 281, 635, 740, 823
AjnI CCWGG 1 cut(s) 463
AluBI AGCT 3 cut(s) 475, 617, 869
AluI AGCT 3 cut(s) 475, 617, 869
Alw26I GTCTC 1 cut(s) 705
AlwI GGATC 1 cut(s) 770
Ama87I CYCGRG 1 cut(s) 438
AoxI GGCC 1 cut(s) 236
ApeKI GCWGC 2 cut(s) 297, 510
AspLEI GCGC 1 cut(s) 601
AspS9I GGNCC 1 cut(s) 644
AsuHPI GGTGA 4 cut(s) 320, 479, 842, 864
AvaI CYCGRG 1 cut(s) 438
AvaII GGWCC 1 cut(s) 644
BaeGI GKGCMC 1 cut(s) 773
BanI GGYRCC 1 cut(s) 796
BauI CACGAG 1 cut(s) 729
BbsI GAAGAC 2 cut(s) 52, 161
BbvI GCAGC 2 cut(s) 309, 522
BccI CCATC 1 cut(s) 902
BciT130I CCWGG 1 cut(s) 465
BclI TGATCA 1 cut(s) 322
BcoDI GTCTC 1 cut(s) 705
BfaI CTAG 4 cut(s) 39, 240, 453, 476
BisI GCNGC 2 cut(s) 298, 511
BlsI GCNGC 2 cut(s) 299, 512
BmcAI AGTACT 1 cut(s) 379
Bme1390I CCNGG 1 cut(s) 465
Bme18I GGWCC 1 cut(s) 644
BmeT110I CYCGRG 1 cut(s) 438
BmgT120I GGNCC 1 cut(s) 644
BmiI GGNNCC 2 cut(s) 720, 798
BmrFI CCNGG 1 cut(s) 465
BmsI GCATC 5 cut(s) 640, 670, 800, 852, 890
BpiI GAAGAC 2 cut(s) 52, 161
BpmI CTGGAG 2 cut(s) 167, 783
BpuEI CTTGAG 3 cut(s) 168, 366, 530
BsaBI GATNNNNATC 1 cut(s) 327
BsaI GGTCTC 1 cut(s) 705
BsaWI WCCGGW 1 cut(s) 646
Bsc4I CCNNNNNNNGG 1 cut(s) 520
Bse1I ACTGG 2 cut(s) 150, 800
Bse8I GATNNNNATC 1 cut(s) 327
BseBI CCWGG 1 cut(s) 465
BseGI GGATG 4 cut(s) 295, 655, 843, 905
BseJI GATNNNNATC 1 cut(s) 327
BseLI CCNNNNNNNGG 1 cut(s) 520
BseMII CTCAG 1 cut(s) 608
BseNI ACTGG 2 cut(s) 150, 800
BseSI GKGCMC 1 cut(s) 773
BseXI GCAGC 2 cut(s) 309, 522
BshFI GGCC 1 cut(s) 238
BshNI GGYRCC 1 cut(s) 796
BsiHKCI CYCGRG 1 cut(s) 438
BsiSI CCGG 2 cut(s) 647, 897
BslI CCNNNNNNNGG 1 cut(s) 520
BsmAI GTCTC 1 cut(s) 705
BsnI GGCC 1 cut(s) 238
Bso31I GGTCTC 1 cut(s) 705
BsoBI CYCGRG 1 cut(s) 438
Bsp1286I GDGCHC 1 cut(s) 773
Bsp1407I TGTACA 2 cut(s) 196, 607
Bsp143I GATC 3 cut(s) 227, 322, 775
BspACI CCGC 1 cut(s) 521
BspANI GGCC 1 cut(s) 238
BspCNI CTCAG 1 cut(s) 607
BspLI GGNNCC 2 cut(s) 720, 798
BspPI GGATC 1 cut(s) 770
BspT107I GGYRCC 1 cut(s) 796
BspTNI GGTCTC 1 cut(s) 705
BsrGI TGTACA 2 cut(s) 196, 607
BsrI ACTGG 2 cut(s) 150, 800
BssMI GATC 3 cut(s) 227, 322, 775
BssSI CACGAG 1 cut(s) 729
Bst2BI CACGAG 1 cut(s) 729
Bst2UI CCWGG 1 cut(s) 465
Bst4CI ACNGT 2 cut(s) 856, 916
Bst6I CTCTTC 1 cut(s) 927
BstAPI GCANNNNNTGC 1 cut(s) 363
BstAUI TGTACA 2 cut(s) 196, 607
BstC8I GCNNGC 1 cut(s) 567
BstDEI CTNAG 3 cut(s) 8, 530, 594
BstF5I GGATG 4 cut(s) 295, 655, 843, 905
BstHHI GCGC 1 cut(s) 601
BstKTI GATC 3 cut(s) 230, 325, 778
BstMAI GTCTC 1 cut(s) 705
BstMBI GATC 3 cut(s) 227, 322, 775
BstMWI GCNNNNNNNGC 1 cut(s) 363
BstNI CCWGG 1 cut(s) 465
BstNSI RCATGY 1 cut(s) 569
BstSCI CCNGG 1 cut(s) 463
BstSLI GKGCMC 1 cut(s) 773
BstV1I GCAGC 2 cut(s) 309, 522
BstV2I GAAGAC 2 cut(s) 52, 161
BsuRI GGCC 1 cut(s) 238
BtsCI GGATG 4 cut(s) 295, 655, 843, 905
BtsIMutI CAGTG 2 cut(s) 143, 771
Cac8I GCNNGC 1 cut(s) 567
CfoI GCGC 1 cut(s) 601
Cfr13I GGNCC 1 cut(s) 644
CpoI CGGWCCG 1 cut(s) 644
CseI GACGC 1 cut(s) 200
CsiI ACCWGGT 1 cut(s) 463
Csp6I GTAC 4 cut(s) 197, 378, 427, 608
CspI CGGWCCG 1 cut(s) 644
CviAII CATG 6 cut(s) 251, 358, 503, 566, 602, 905
CviQI GTAC 4 cut(s) 197, 378, 427, 608
DdeI CTNAG 3 cut(s) 8, 530, 594
DpnI GATC 3 cut(s) 229, 324, 777
DpnII GATC 3 cut(s) 227, 322, 775
Eam1104I CTCTTC 1 cut(s) 927
EarI CTCTTC 1 cut(s) 927
Eco147I AGGCCT 1 cut(s) 238
Eco31I GGTCTC 1 cut(s) 705
Eco47I GGWCC 1 cut(s) 644
Eco88I CYCGRG 1 cut(s) 438
EcoRII CCWGG 1 cut(s) 463
FaeI CATG 6 cut(s) 254, 361, 506, 569, 605, 908
FaiI YATR 9 cut(s) 15, 252, 359, 504, 519, 567, 572, 603, 906
FalI AAGNNNNNCTT 2 cut(s) 603, 635
FatI CATG 6 cut(s) 250, 357, 502, 565, 601, 904
FbaI TGATCA 1 cut(s) 322
Fnu4HI GCNGC 2 cut(s) 298, 511
FokI GGATG 4 cut(s) 302, 662, 830, 912
Fsp4HI GCNGC 2 cut(s) 298, 511
FspBI CTAG 4 cut(s) 39, 240, 453, 476
GlaI GCGC 1 cut(s) 600
GluI GCNGC 2 cut(s) 298, 511
GsuI CTGGAG 2 cut(s) 167, 783
HaeIII GGCC 1 cut(s) 238
HapII CCGG 2 cut(s) 647, 897
HgaI GACGC 1 cut(s) 200
HhaI GCGC 1 cut(s) 601
Hin1II CATG 6 cut(s) 254, 361, 506, 569, 605, 908
Hin6I GCGC 1 cut(s) 599
HinP1I GCGC 1 cut(s) 599
HincII GTYRAC 2 cut(s) 26, 79
HindII GTYRAC 2 cut(s) 26, 79
HinfI GANTC 6 cut(s) 22, 140, 272, 436, 448, 534
HpaII CCGG 2 cut(s) 647, 897
HphI GGTGA 4 cut(s) 320, 479, 842, 864
Hpy166II GTNNAC 3 cut(s) 26, 79, 190
Hpy188I TCNGA 2 cut(s) 559, 644
Hpy188III TCNNGA 5 cut(s) 317, 371, 704, 762, 881
Hpy8I GTNNAC 3 cut(s) 26, 79, 190
HpyAV CCTTC 1 cut(s) 165
HpyCH4III ACNGT 2 cut(s) 856, 916
HpyCH4IV ACGT 1 cut(s) 425
HpyCH4V TGCA 7 cut(s) 4, 122, 176, 502, 565, 587, 734
HpyF10VI GCNNNNNNNGC 1 cut(s) 363
HpyF3I CTNAG 3 cut(s) 8, 530, 594
HpySE526I ACGT 1 cut(s) 425
Hsp92II CATG 6 cut(s) 254, 361, 506, 569, 605, 908
HspAI GCGC 1 cut(s) 599
Ksp22I TGATCA 1 cut(s) 322
Kzo9I GATC 3 cut(s) 227, 322, 775
LmnI GCTCC 2 cut(s) 507, 934
Lsp1109I GCAGC 2 cut(s) 309, 522
LweI GCATC 5 cut(s) 640, 670, 800, 852, 890
MabI ACCWGGT 1 cut(s) 463
MaeI CTAG 4 cut(s) 39, 240, 453, 476
MaeII ACGT 1 cut(s) 425
MaeIII GTNAC 4 cut(s) 212, 393, 830, 916
MalI GATC 3 cut(s) 229, 324, 777
MboI GATC 3 cut(s) 227, 322, 775
MboII GAAGA 8 cut(s) 43, 57, 161, 215, 281, 744, 747, 914
MfeI CAATTG 2 cut(s) 123, 735
MhlI GDGCHC 1 cut(s) 773
MluCI AATT 7 cut(s) 82, 106, 123, 338, 735, 791, 891
MlyI GAGTC 3 cut(s) 31, 430, 543
MmeI TCCRAC 1 cut(s) 330
MseI TTAA 4 cut(s) 621, 890, 947, 967
MspI CCGG 2 cut(s) 647, 897
MspR9I CCNGG 1 cut(s) 465
MunI CAATTG 2 cut(s) 123, 735
MvaI CCWGG 1 cut(s) 465
MwoI GCNNNNNNNGC 1 cut(s) 363
NdeII GATC 3 cut(s) 227, 322, 775
NlaIII CATG 6 cut(s) 254, 361, 506, 569, 605, 908
NlaIV GGNNCC 2 cut(s) 720, 798
NmuCI GTSAC 1 cut(s) 830
NspI RCATGY 1 cut(s) 569
PaeI GCATGC 1 cut(s) 569
PaeR7I CTCGAG 1 cut(s) 438
PceI AGGCCT 1 cut(s) 238
PfeI GAWTC 3 cut(s) 140, 272, 448
PkrI GCNGC 2 cut(s) 299, 512
PleI GAGTC 3 cut(s) 30, 430, 542
PpsI GAGTC 3 cut(s) 30, 430, 542
Psp6I CCWGG 1 cut(s) 463
PspGI CCWGG 1 cut(s) 463
PspN4I GGNNCC 2 cut(s) 720, 798
PspPI GGNCC 1 cut(s) 644
PspXI VCTCGAGB 1 cut(s) 438
RsaI GTAC 4 cut(s) 198, 379, 428, 609
RsaNI GTAC 4 cut(s) 197, 378, 427, 608
Rsr2I CGGWCCG 1 cut(s) 644
RsrII CGGWCCG 1 cut(s) 644
SaqAI TTAA 4 cut(s) 621, 890, 947, 967
SatI GCNGC 2 cut(s) 298, 511
Sau3AI GATC 3 cut(s) 227, 322, 775
Sau96I GGNCC 1 cut(s) 644
ScaI AGTACT 1 cut(s) 379
SchI GAGTC 3 cut(s) 31, 430, 543
ScrFI CCNGG 1 cut(s) 465
SduI GDGCHC 1 cut(s) 773
SetI ASST 8 cut(s) 117, 428, 466, 477, 619, 720, 871, 880
SexAI ACCWGGT 1 cut(s) 463
SfaNI GCATC 5 cut(s) 640, 670, 800, 852, 890
Sfr274I CTCGAG 1 cut(s) 438
SinI GGWCC 1 cut(s) 644
SlaI CTCGAG 1 cut(s) 438
SmlI CTYRAG 4 cut(s) 183, 381, 438, 545
SmoI CTYRAG 4 cut(s) 183, 381, 438, 545
SphI GCATGC 1 cut(s) 569
Sse9I AATT 7 cut(s) 82, 106, 123, 338, 735, 791, 891
SseBI AGGCCT 1 cut(s) 238
SsiI CCGC 1 cut(s) 521
SspI AATATT 2 cut(s) 485, 964
SspMI CTAG 4 cut(s) 39, 240, 453, 476
StuI AGGCCT 1 cut(s) 238
StyD4I CCNGG 1 cut(s) 463
TaaI ACNGT 2 cut(s) 856, 916
TaiI ACGT 1 cut(s) 428
TaqI TCGA 4 cut(s) 226, 439, 664, 959
TasI AATT 7 cut(s) 82, 106, 123, 338, 735, 791, 891
TatI WGTACW 3 cut(s) 196, 377, 607
TfiI GAWTC 3 cut(s) 140, 272, 448
Tru1I TTAA 4 cut(s) 621, 890, 947, 967
Tru9I TTAA 4 cut(s) 621, 890, 947, 967
TscAI CASTG 2 cut(s) 150, 778
TseFI GTSAC 1 cut(s) 830
TseI GCWGC 2 cut(s) 297, 510
Tsp45I GTSAC 1 cut(s) 830
TspDTI ATGAA 2 cut(s) 639, 747
TspGWI ACGGA 1 cut(s) 176
TspRI CASTG 2 cut(s) 150, 778
VpaK11BI GGWCC 1 cut(s) 644
XceI RCATGY 1 cut(s) 569
XhoI CTCGAG 1 cut(s) 438
XspI CTAG 4 cut(s) 39, 240, 453, 476
ZrmI AGTACT 1 cut(s) 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.