WD40 repeats
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G19485 AT1G19485 |
| fragaria_vesca | FvH4_6g18260 FvH4_6g18260 FvH4_6g18260 FvH4_6g18260 FvH4_7g02500 |
| malus_domestica | MD09G1081300.v1.1 MD12G1022600.v1.1 |
| prunus_persica | Prupe.7G114200_v2.0.a1 Prupe.7G114200_v2.0.a1 |
| pyrus_communis | pycom09g00800 pycom12g02090 |
| rosa_chinensis | RchiOBHm_Chr3g0472691 RchiOBHm_Chr3g0472701 RchiOBHm_Chr4g0409331 |
| rosa_laevigata | RLG00000008568 RLG00000016132 RLG00000024063 |
| rosa_multiflora | Rmu_co8285783.1_g000001 Rmu_sc0001616.1_g000052 Rmu_sc0001616.1_g000057 Rmu_sc0001851.1_g000016 Rmu_sc0003510.1_g000010 Rmu_sc0003510.1_g000011 Rmu_sc0003510.1_g000012 Rmu_sc0034965.1_g000001 |
| rosa_roxburghii | Rroxscaffold_5G00353840 Rroxscaffold_6G00408710 |
| rosa_rugosa | Rorug03G0127200 Rorug04G0092400 Rorug04G0092500 |
| rosa_samantha | Rh3AG179900 Rh3BG205800 Rh3CG202900 Rh3DG169900 Rh4AG155600 Rh4BG153800 Rh4CG164600 Rh4DG148500 |
| rosa_wichuraiana | Rw3G016270 Rw4G012710 Rw4G012730 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 671, 1726 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 662, 1112 |
| AccBSI | CCGCTC | 1 cut(s) | 336 |
| AccII | CGCG | 1 cut(s) | 54 |
| AccIII | TCCGGA | 1 cut(s) | 1406 |
| AclWI | GGATC | 5 cut(s) | 1700, 1889, 1958, 2414, 2520 |
| AcsI | RAATTY | 3 cut(s) | 1072, 1212, 1877 |
| AcuI | CTGAAG | 3 cut(s) | 256, 1974, 2283 |
| AcyI | GRCGYC | 1 cut(s) | 309 |
| AfaI | GTAC | 5 cut(s) | 1080, 1374, 1973, 2298, 2560 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 29, 335, 662, 1112, 1285, 1534, 2051 |
| AgsI | TTSAA | 9 cut(s) | 116, 158, 1211, 1400, 1440, 1670, 2114, 2320, 2432 |
| AjnI | CCWGG | 1 cut(s) | 1228 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 810, 842, 1525, 1557 |
| Alw21I | GWGCWC | 3 cut(s) | 132, 300, 2188 |
| Alw26I | GTCTC | 3 cut(s) | 726, 1635, 2023 |
| AlwI | GGATC | 5 cut(s) | 1700, 1889, 1958, 2414, 2520 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2071 |
| Ama87I | CYCGRG | 1 cut(s) | 29 |
| Aor13HI | TCCGGA | 1 cut(s) | 1406 |
| AoxI | GGCC | 9 cut(s) | 533, 837, 869, 921, 1760, 1812, 1870, 2068, 2232 |
| ApaI | GGGCCC | 2 cut(s) | 1816, 2236 |
| ApeKI | GCWGC | 4 cut(s) | 614, 1194, 1275, 2453 |
| ApoI | RAATTY | 3 cut(s) | 1072, 1212, 1877 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 269, 720 |
| AspLEI | GCGC | 4 cut(s) | 209, 1366, 1781, 1804 |
| AsuC2I | CCSGG | 4 cut(s) | 329, 1413, 2231, 2424 |
| AsuHPI | GGTGA | 4 cut(s) | 662, 1244, 1517, 2426 |
| AvaI | CYCGRG | 1 cut(s) | 29 |
| AvaII | GGWCC | 4 cut(s) | 230, 1409, 1415, 1885 |
| BaeGI | GKGCMC | 3 cut(s) | 1703, 1816, 2236 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2280, 2313 |
| BanI | GGYRCC | 2 cut(s) | 671, 1726 |
| BanII | GRGCYC | 5 cut(s) | 132, 300, 1816, 2188, 2236 |
| BauI | CACGAG | 1 cut(s) | 1659 |
| BbsI | GAAGAC | 5 cut(s) | 683, 802, 886, 1043, 1150 |
| Bbv12I | GWGCWC | 3 cut(s) | 132, 300, 2188 |
| BbvI | GCAGC | 4 cut(s) | 601, 1206, 1287, 2465 |
| BccI | CCATC | 6 cut(s) | 404, 591, 968, 1181, 2012, 2291 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 372, 406, 569, 587, 603, 621 |
| BciT130I | CCWGG | 1 cut(s) | 1230 |
| BcnI | CCSGG | 4 cut(s) | 329, 1413, 2231, 2424 |
| BcoDI | GTCTC | 3 cut(s) | 726, 1635, 2023 |
| BfmI | CTRYAG | 2 cut(s) | 726, 2220 |
| BfoI | RGCGCY | 2 cut(s) | 210, 1805 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 868 |
| BglII | AGATCT | 1 cut(s) | 629 |
| BisI | GCNGC | 6 cut(s) | 337, 443, 615, 1195, 1276, 2454 |
| BlpI | GCTNAGC | 1 cut(s) | 2337 |
| BlsI | GCNGC | 6 cut(s) | 338, 444, 616, 1196, 1277, 2455 |
| Bme1390I | CCNGG | 5 cut(s) | 329, 1230, 1413, 2231, 2424 |
| Bme18I | GGWCC | 4 cut(s) | 230, 1409, 1415, 1885 |
| BmeT110I | CYCGRG | 1 cut(s) | 29 |
| BmrFI | CCNGG | 5 cut(s) | 329, 1230, 1413, 2231, 2424 |
| BmrI | ACTGGG | 2 cut(s) | 228, 2288 |
| BmsI | GCATC | 7 cut(s) | 133, 1574, 1600, 1730, 2187, 2206, 2465 |
| BmuI | ACTGGG | 2 cut(s) | 228, 2288 |
| BpiI | GAAGAC | 5 cut(s) | 683, 802, 886, 1043, 1150 |
| BpmI | CTGGAG | 4 cut(s) | 188, 480, 1713, 2125 |
| Bpu10I | CCTNAGC | 1 cut(s) | 858 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2337 |
| BpuEI | CTTGAG | 3 cut(s) | 181, 1050, 1295 |
| BpuMI | CCSGG | 4 cut(s) | 329, 1413, 2231, 2424 |
| Bsa29I | ATCGAT | 2 cut(s) | 141, 1920 |
| BsaAI | YACGTR | 1 cut(s) | 1892 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1788 |
| BsaHI | GRCGYC | 1 cut(s) | 309 |
| BsaI | GGTCTC | 1 cut(s) | 1635 |
| BsaJI | CCNNGG | 3 cut(s) | 1528, 1931, 1967 |
| BsaWI | WCCGGW | 1 cut(s) | 1406 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 478, 508 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 29, 335, 662, 1112, 1285, 1534, 2051 |
| Bse1I | ACTGG | 8 cut(s) | 152, 173, 234, 667, 1730, 2179, 2294, 2616 |
| Bse3DI | GCAATG | 2 cut(s) | 609, 1496 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1788 |
| BseAI | TCCGGA | 1 cut(s) | 1406 |
| BseBI | CCWGG | 1 cut(s) | 1230 |
| BseCI | ATCGAT | 2 cut(s) | 141, 1920 |
| BseDI | CCNNGG | 3 cut(s) | 1528, 1931, 1967 |
| BseGI | GGATG | 8 cut(s) | 424, 478, 488, 619, 979, 1495, 1552, 2494 |
| BseJI | GATNNNNATC | 1 cut(s) | 1788 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 29, 335, 662, 1112, 1285, 1534, 2051 |
| BseMI | GCAATG | 2 cut(s) | 609, 1496 |
| BseMII | CTCAG | 5 cut(s) | 362, 849, 1020, 1373, 2050 |
| BseNI | ACTGG | 8 cut(s) | 152, 173, 234, 667, 1730, 2179, 2294, 2616 |
| BseSI | GKGCMC | 3 cut(s) | 1703, 1816, 2236 |
| BseXI | GCAGC | 4 cut(s) | 601, 1206, 1287, 2465 |
| BseYI | CCCAGC | 1 cut(s) | 1816 |
| BsgI | GTGCAG | 1 cut(s) | 2057 |
| Bsh1236I | CGCG | 1 cut(s) | 54 |
| BshFI | GGCC | 9 cut(s) | 535, 839, 871, 923, 1762, 1814, 1872, 2070, 2234 |
| BshNI | GGYRCC | 2 cut(s) | 671, 1726 |
| BshVI | ATCGAT | 2 cut(s) | 141, 1920 |
| BsiHKAI | GWGCWC | 3 cut(s) | 132, 300, 2188 |
| BsiHKCI | CYCGRG | 1 cut(s) | 29 |
| BsiSI | CCGG | 5 cut(s) | 329, 1407, 1412, 2230, 2423 |
| BslFI | GGGAC | 5 cut(s) | 119, 497, 1890, 1898, 1928 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 29, 335, 662, 1112, 1285, 1534, 2051 |
| BsmAI | GTCTC | 3 cut(s) | 726, 1635, 2023 |
| BsmFI | GGGAC | 5 cut(s) | 119, 497, 1890, 1898, 1928 |
| BsmI | GAATGC | 1 cut(s) | 1036 |
| BsnI | GGCC | 9 cut(s) | 535, 839, 871, 923, 1762, 1814, 1872, 2070, 2234 |
| Bso31I | GGTCTC | 1 cut(s) | 1635 |
| BsoBI | CYCGRG | 1 cut(s) | 29 |
| Bsp120I | GGGCCC | 2 cut(s) | 1812, 2232 |
| Bsp1286I | GDGCHC | 6 cut(s) | 132, 300, 1703, 1816, 2188, 2236 |
| Bsp13I | TCCGGA | 1 cut(s) | 1406 |
| Bsp1407I | TGTACA | 2 cut(s) | 1078, 1372 |
| Bsp143I | GATC | 9 cut(s) | 629, 1087, 1705, 1894, 1921, 1963, 2389, 2419, 2512 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2337 |
| Bsp19I | CCATGG | 1 cut(s) | 1528 |
| BspANI | GGCC | 9 cut(s) | 535, 839, 871, 923, 1762, 1814, 1872, 2070, 2234 |
| BspCNI | CTCAG | 5 cut(s) | 363, 850, 1021, 1372, 2049 |
| BspDI | ATCGAT | 2 cut(s) | 141, 1920 |
| BspEI | TCCGGA | 1 cut(s) | 1406 |
| BspFNI | CGCG | 1 cut(s) | 54 |
| BspHI | TCATGA | 2 cut(s) | 568, 1090 |
| BspPI | GGATC | 5 cut(s) | 1700, 1889, 1958, 2414, 2520 |
| BspT107I | GGYRCC | 2 cut(s) | 671, 1726 |
| BspTNI | GGTCTC | 1 cut(s) | 1635 |
| BsrBI | CCGCTC | 1 cut(s) | 336 |
| BsrDI | GCAATG | 2 cut(s) | 609, 1496 |
| BsrGI | TGTACA | 2 cut(s) | 1078, 1372 |
| BsrI | ACTGG | 8 cut(s) | 152, 173, 234, 667, 1730, 2179, 2294, 2616 |
| BssECI | CCNNGG | 3 cut(s) | 1528, 1931, 1967 |
| BssMI | GATC | 9 cut(s) | 629, 1087, 1705, 1894, 1921, 1963, 2389, 2419, 2512 |
| BssNI | GRCGYC | 1 cut(s) | 309 |
| BssSI | CACGAG | 1 cut(s) | 1659 |
| BssT1I | CCWWGG | 3 cut(s) | 1528, 1931, 1967 |
| Bst2BI | CACGAG | 1 cut(s) | 1659 |
| Bst2UI | CCWGG | 1 cut(s) | 1230 |
| Bst4CI | ACNGT | 1 cut(s) | 2131 |
| Bst6I | CTCTTC | 4 cut(s) | 3, 924, 2259, 2348 |
| BstACI | GRCGYC | 1 cut(s) | 309 |
| BstAUI | TGTACA | 2 cut(s) | 1078, 1372 |
| BstBAI | YACGTR | 1 cut(s) | 1892 |
| BstC8I | GCNNGC | 5 cut(s) | 285, 391, 1332, 1589, 2072 |
| BstDEI | CTNAG | 7 cut(s) | 371, 858, 1029, 1359, 2036, 2337, 2462 |
| BstDSI | CCRYGG | 1 cut(s) | 1528 |
| BstF5I | GGATG | 8 cut(s) | 424, 478, 488, 619, 979, 1495, 1552, 2494 |
| BstFNI | CGCG | 1 cut(s) | 54 |
| BstH2I | RGCGCY | 2 cut(s) | 210, 1805 |
| BstHHI | GCGC | 4 cut(s) | 209, 1366, 1781, 1804 |
| BstKTI | GATC | 9 cut(s) | 632, 1090, 1708, 1897, 1924, 1966, 2392, 2422, 2515 |
| BstMAI | GTCTC | 3 cut(s) | 726, 1635, 2023 |
| BstMBI | GATC | 9 cut(s) | 629, 1087, 1705, 1894, 1921, 1963, 2389, 2419, 2512 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 395, 614, 868 |
| BstNI | CCWGG | 1 cut(s) | 1230 |
| BstNSI | RCATGY | 2 cut(s) | 287, 1334 |
| BstSCI | CCNGG | 5 cut(s) | 327, 1228, 1411, 2229, 2422 |
| BstSFI | CTRYAG | 2 cut(s) | 726, 2220 |
| BstSLI | GKGCMC | 3 cut(s) | 1703, 1816, 2236 |
| BstUI | CGCG | 1 cut(s) | 54 |
| BstV1I | GCAGC | 4 cut(s) | 601, 1206, 1287, 2465 |
| BstV2I | GAAGAC | 5 cut(s) | 683, 802, 886, 1043, 1150 |
| BstX2I | RGATCY | 2 cut(s) | 629, 1963 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2206 |
| BstYI | RGATCY | 2 cut(s) | 629, 1963 |
| Bsu15I | ATCGAT | 2 cut(s) | 141, 1920 |
| BsuRI | GGCC | 9 cut(s) | 535, 839, 871, 923, 1762, 1814, 1872, 2070, 2234 |
| BsuTUI | ATCGAT | 2 cut(s) | 141, 1920 |
| BtgI | CCRYGG | 1 cut(s) | 1528 |
| BtsCI | GGATG | 8 cut(s) | 424, 478, 488, 619, 979, 1495, 1552, 2494 |
| BtsIMutI | CAGTG | 3 cut(s) | 241, 777, 1701 |
| Cac8I | GCNNGC | 5 cut(s) | 285, 391, 1332, 1589, 2072 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2071 |
| CciI | TCATGA | 2 cut(s) | 568, 1090 |
| CfoI | GCGC | 4 cut(s) | 209, 1366, 1781, 1804 |
| ClaI | ATCGAT | 2 cut(s) | 141, 1920 |
| CpoI | CGGWCCG | 1 cut(s) | 1409 |
| CseI | GACGC | 1 cut(s) | 317 |
| CsiI | ACCWGGT | 1 cut(s) | 1228 |
| Csp6I | GTAC | 5 cut(s) | 1079, 1373, 1972, 2297, 2559 |
| CspI | CGGWCCG | 1 cut(s) | 1409 |
| CviQI | GTAC | 5 cut(s) | 1079, 1373, 1972, 2297, 2559 |
| DdeI | CTNAG | 7 cut(s) | 371, 858, 1029, 1359, 2036, 2337, 2462 |
| DpnI | GATC | 9 cut(s) | 631, 1089, 1707, 1896, 1923, 1965, 2391, 2421, 2514 |
| DpnII | GATC | 9 cut(s) | 629, 1087, 1705, 1894, 1921, 1963, 2389, 2419, 2512 |
| Eam1104I | CTCTTC | 4 cut(s) | 3, 924, 2259, 2348 |
| EarI | CTCTTC | 4 cut(s) | 3, 924, 2259, 2348 |
| EciI | GGCGGA | 2 cut(s) | 58, 243 |
| Ecl136II | GAGCTC | 3 cut(s) | 130, 298, 2186 |
| Eco130I | CCWWGG | 3 cut(s) | 1528, 1931, 1967 |
| Eco147I | AGGCCT | 3 cut(s) | 871, 1762, 1872 |
| Eco24I | GRGCYC | 5 cut(s) | 132, 300, 1816, 2188, 2236 |
| Eco31I | GGTCTC | 1 cut(s) | 1635 |
| Eco47I | GGWCC | 4 cut(s) | 230, 1409, 1415, 1885 |
| Eco53kI | GAGCTC | 3 cut(s) | 130, 298, 2186 |
| Eco57I | CTGAAG | 3 cut(s) | 256, 1974, 2283 |
| Eco88I | CYCGRG | 1 cut(s) | 29 |
| EcoICRI | GAGCTC | 3 cut(s) | 130, 298, 2186 |
| EcoO109I | RGGNCCY | 6 cut(s) | 533, 1415, 1813, 1885, 2068, 2233 |
| EcoRII | CCWGG | 1 cut(s) | 1228 |
| EcoT14I | CCWWGG | 3 cut(s) | 1528, 1931, 1967 |
| EcoT22I | ATGCAT | 2 cut(s) | 285, 2510 |
| EcoT38I | GRGCYC | 5 cut(s) | 132, 300, 1816, 2188, 2236 |
| ErhI | CCWWGG | 3 cut(s) | 1528, 1931, 1967 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1368, 1400 |
| FaqI | GGGAC | 5 cut(s) | 119, 497, 1890, 1898, 1928 |
| FauI | CCCGC | 2 cut(s) | 47, 472 |
| Fnu4HI | GCNGC | 6 cut(s) | 337, 443, 615, 1195, 1276, 2454 |
| FokI | GGATG | 8 cut(s) | 431, 475, 485, 606, 986, 1502, 1559, 2501 |
| FriOI | GRGCYC | 5 cut(s) | 132, 300, 1816, 2188, 2236 |
| Fsp4HI | GCNGC | 6 cut(s) | 337, 443, 615, 1195, 1276, 2454 |
| GlaI | GCGC | 4 cut(s) | 208, 1365, 1780, 1803 |
| GluI | GCNGC | 6 cut(s) | 337, 443, 615, 1195, 1276, 2454 |
| GsaI | CCCAGC | 1 cut(s) | 1820 |
| GsuI | CTGGAG | 4 cut(s) | 188, 480, 1713, 2125 |
| HaeII | RGCGCY | 2 cut(s) | 210, 1805 |
| HaeIII | GGCC | 9 cut(s) | 535, 839, 871, 923, 1762, 1814, 1872, 2070, 2234 |
| HapII | CCGG | 5 cut(s) | 329, 1407, 1412, 2230, 2423 |
| HgaI | GACGC | 1 cut(s) | 317 |
| HhaI | GCGC | 4 cut(s) | 209, 1366, 1781, 1804 |
| Hin1I | GRCGYC | 1 cut(s) | 309 |
| Hin6I | GCGC | 4 cut(s) | 207, 1364, 1779, 1802 |
| HinP1I | GCGC | 4 cut(s) | 207, 1364, 1779, 1802 |
| HincII | GTYRAC | 3 cut(s) | 964, 1124, 1177 |
| HindII | GTYRAC | 3 cut(s) | 964, 1124, 1177 |
| HindIII | AAGCTT | 1 cut(s) | 403 |
| HpaII | CCGG | 5 cut(s) | 329, 1407, 1412, 2230, 2423 |
| HphI | GGTGA | 4 cut(s) | 662, 1244, 1517, 2426 |
| Hpy166II | GTNNAC | 3 cut(s) | 964, 1124, 1177 |
| Hpy188I | TCNGA | 8 cut(s) | 275, 295, 681, 1030, 1324, 1993, 2039, 2183 |
| Hpy8I | GTNNAC | 3 cut(s) | 964, 1124, 1177 |
| Hpy99I | CGWCG | 1 cut(s) | 311 |
| HpyAV | CCTTC | 1 cut(s) | 2609 |
| HpyCH4III | ACNGT | 1 cut(s) | 2131 |
| HpyCH4IV | ACGT | 2 cut(s) | 1891, 2195 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 395, 614, 868 |
| HpyF3I | CTNAG | 7 cut(s) | 371, 858, 1029, 1359, 2036, 2337, 2462 |
| HpySE526I | ACGT | 2 cut(s) | 1891, 2195 |
| Hsp92I | GRCGYC | 1 cut(s) | 309 |
| HspAI | GCGC | 4 cut(s) | 207, 1364, 1779, 1802 |
| Kpn2I | TCCGGA | 1 cut(s) | 1406 |
| Kzo9I | GATC | 9 cut(s) | 629, 1087, 1705, 1894, 1921, 1963, 2389, 2419, 2512 |
| LmnI | GCTCC | 4 cut(s) | 148, 169, 761, 1272 |
| Lsp1109I | GCAGC | 4 cut(s) | 601, 1206, 1287, 2465 |
| LweI | GCATC | 7 cut(s) | 133, 1574, 1600, 1730, 2187, 2206, 2465 |
| MabI | ACCWGGT | 1 cut(s) | 1228 |
| MaeII | ACGT | 2 cut(s) | 1891, 2195 |
| MaeIII | GTNAC | 6 cut(s) | 108, 575, 2153, 2253, 2278, 2414 |
| MalI | GATC | 9 cut(s) | 631, 1089, 1707, 1896, 1923, 1965, 2391, 2421, 2514 |
| MbiI | CCGCTC | 1 cut(s) | 336 |
| MboI | GATC | 9 cut(s) | 629, 1087, 1705, 1894, 1921, 1963, 2389, 2419, 2512 |
| MfeI | CAATTG | 2 cut(s) | 985, 1665 |
| MflI | RGATCY | 2 cut(s) | 629, 1963 |
| MhlI | GDGCHC | 6 cut(s) | 132, 300, 1703, 1816, 2188, 2236 |
| MlyI | GAGTC | 7 cut(s) | 116, 248, 285, 1129, 1308, 1567, 2264 |
| Mph1103I | ATGCAT | 2 cut(s) | 285, 2510 |
| MroI | TCCGGA | 1 cut(s) | 1406 |
| MroXI | GAANNNNTTC | 2 cut(s) | 269, 720 |
| MseI | TTAA | 5 cut(s) | 342, 1386, 1566, 2526, 2568 |
| MslI | CAYNNNNRTG | 1 cut(s) | 2503 |
| MspI | CCGG | 5 cut(s) | 329, 1407, 1412, 2230, 2423 |
| MspR9I | CCNGG | 5 cut(s) | 329, 1230, 1413, 2231, 2424 |
| MunI | CAATTG | 2 cut(s) | 985, 1665 |
| Mva1269I | GAATGC | 1 cut(s) | 1036 |
| MvaI | CCWGG | 1 cut(s) | 1230 |
| MvnI | CGCG | 1 cut(s) | 54 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 395, 614, 868 |
| NciI | CCSGG | 4 cut(s) | 329, 1413, 2231, 2424 |
| NcoI | CCATGG | 1 cut(s) | 1528 |
| NdeII | GATC | 9 cut(s) | 629, 1087, 1705, 1894, 1921, 1963, 2389, 2419, 2512 |
| NmuCI | GTSAC | 5 cut(s) | 108, 575, 2253, 2278, 2414 |
| NsiI | ATGCAT | 2 cut(s) | 285, 2510 |
| NspI | RCATGY | 2 cut(s) | 287, 1334 |
| PaeI | GCATGC | 2 cut(s) | 287, 1334 |
| PagI | TCATGA | 2 cut(s) | 568, 1090 |
| PceI | AGGCCT | 3 cut(s) | 871, 1762, 1872 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 138 |
| PctI | GAATGC | 1 cut(s) | 1036 |
| PdmI | GAANNNNTTC | 2 cut(s) | 269, 720 |
| PfeI | GAWTC | 9 cut(s) | 265, 384, 821, 905, 956, 1022, 1506, 1957, 2438 |
| PflFI | GACNNNGTC | 1 cut(s) | 1413 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 662, 1112 |
| PfoI | TCCNGGA | 1 cut(s) | 327 |
| PkrI | GCNGC | 6 cut(s) | 338, 444, 616, 1196, 1277, 2455 |
| PleI | GAGTC | 7 cut(s) | 115, 248, 284, 1128, 1307, 1566, 2264 |
| PpsI | GAGTC | 7 cut(s) | 115, 248, 284, 1128, 1307, 1566, 2264 |
| Ppu21I | YACGTR | 1 cut(s) | 1892 |
| PpuMI | RGGWCCY | 2 cut(s) | 1415, 1885 |
| Psp124BI | GAGCTC | 3 cut(s) | 132, 300, 2188 |
| Psp5II | RGGWCCY | 2 cut(s) | 1415, 1885 |
| Psp6I | CCWGG | 1 cut(s) | 1228 |
| PspFI | CCCAGC | 1 cut(s) | 1816 |
| PspGI | CCWGG | 1 cut(s) | 1228 |
| PspOMI | GGGCCC | 2 cut(s) | 1812, 2232 |
| PspPPI | RGGWCCY | 2 cut(s) | 1415, 1885 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2071 |
| PsuI | RGATCY | 2 cut(s) | 629, 1963 |
| PsyI | GACNNNGTC | 1 cut(s) | 1413 |
| RsaI | GTAC | 5 cut(s) | 1080, 1374, 1973, 2298, 2560 |
| RsaNI | GTAC | 5 cut(s) | 1079, 1373, 1972, 2297, 2559 |
| RseI | CAYNNNNRTG | 1 cut(s) | 2503 |
| Rsr2I | CGGWCCG | 1 cut(s) | 1409 |
| RsrII | CGGWCCG | 1 cut(s) | 1409 |
| SacI | GAGCTC | 3 cut(s) | 132, 300, 2188 |
| SaqAI | TTAA | 5 cut(s) | 342, 1386, 1566, 2526, 2568 |
| SatI | GCNGC | 6 cut(s) | 337, 443, 615, 1195, 1276, 2454 |
| Sau3AI | GATC | 9 cut(s) | 629, 1087, 1705, 1894, 1921, 1963, 2389, 2419, 2512 |
| SchI | GAGTC | 7 cut(s) | 116, 248, 285, 1129, 1308, 1567, 2264 |
| ScrFI | CCNGG | 5 cut(s) | 329, 1230, 1413, 2231, 2424 |
| SduI | GDGCHC | 6 cut(s) | 132, 300, 1703, 1816, 2188, 2236 |
| SexAI | ACCWGGT | 1 cut(s) | 1228 |
| SfaNI | GCATC | 7 cut(s) | 133, 1574, 1600, 1730, 2187, 2206, 2465 |
| SfcI | CTRYAG | 2 cut(s) | 726, 2220 |
| SinI | GGWCC | 4 cut(s) | 230, 1409, 1415, 1885 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 2503 |
| SmlI | CTYRAG | 3 cut(s) | 196, 1065, 1310 |
| SmoI | CTYRAG | 3 cut(s) | 196, 1065, 1310 |
| SphI | GCATGC | 2 cut(s) | 287, 1334 |
| SseBI | AGGCCT | 3 cut(s) | 871, 1762, 1872 |
| SspI | AATATT | 2 cut(s) | 1250, 2144 |
| SstI | GAGCTC | 3 cut(s) | 132, 300, 2188 |
| StuI | AGGCCT | 3 cut(s) | 871, 1762, 1872 |
| StyD4I | CCNGG | 5 cut(s) | 327, 1228, 1411, 2229, 2422 |
| StyI | CCWWGG | 3 cut(s) | 1528, 1931, 1967 |
| TaaI | ACNGT | 1 cut(s) | 2131 |
| TaiI | ACGT | 2 cut(s) | 1894, 2198 |
| TaqI | TCGA | 7 cut(s) | 120, 141, 242, 249, 382, 1594, 1920 |
| TatI | WGTACW | 2 cut(s) | 1078, 1372 |
| TauI | GCSGC | 2 cut(s) | 339, 445 |
| TfiI | GAWTC | 9 cut(s) | 265, 384, 821, 905, 956, 1022, 1506, 1957, 2438 |
| Tru1I | TTAA | 5 cut(s) | 342, 1386, 1566, 2526, 2568 |
| Tru9I | TTAA | 5 cut(s) | 342, 1386, 1566, 2526, 2568 |
| TscAI | CASTG | 3 cut(s) | 241, 784, 1708 |
| TseFI | GTSAC | 5 cut(s) | 108, 575, 2253, 2278, 2414 |
| TseI | GCWGC | 4 cut(s) | 614, 1194, 1275, 2453 |
| Tsp45I | GTSAC | 5 cut(s) | 108, 575, 2253, 2278, 2414 |
| TspGWI | ACGGA | 1 cut(s) | 1892 |
| TspRI | CASTG | 3 cut(s) | 241, 784, 1708 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1413 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 662, 1112 |
| VpaK11BI | GGWCC | 4 cut(s) | 230, 1409, 1415, 1885 |
| XapI | RAATTY | 3 cut(s) | 1072, 1212, 1877 |
| XceI | RCATGY | 2 cut(s) | 287, 1334 |
| XmnI | GAANNNNTTC | 2 cut(s) | 269, 720 |
| Zsp2I | ATGCAT | 2 cut(s) | 285, 2510 |