WD40 repeats
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G19485 AT1G19485 |
| fragaria_vesca | FvH4_6g18260 FvH4_6g18260 FvH4_6g18260 FvH4_6g18260 FvH4_7g02500 |
| malus_domestica | MD09G1081300.v1.1 MD12G1022600.v1.1 |
| prunus_persica | Prupe.7G114200_v2.0.a1 Prupe.7G114200_v2.0.a1 |
| pyrus_communis | pycom09g00800 pycom12g02090 |
| rosa_chinensis | RchiOBHm_Chr3g0472691 RchiOBHm_Chr3g0472701 RchiOBHm_Chr4g0409331 |
| rosa_laevigata | RLG00000008568 RLG00000016132 RLG00000024063 |
| rosa_multiflora | Rmu_co8285783.1_g000001 Rmu_sc0001616.1_g000052 Rmu_sc0001616.1_g000057 Rmu_sc0001851.1_g000016 Rmu_sc0003510.1_g000010 Rmu_sc0003510.1_g000011 Rmu_sc0003510.1_g000012 Rmu_sc0034965.1_g000001 |
| rosa_roxburghii | Rroxscaffold_5G00353840 Rroxscaffold_6G00408710 |
| rosa_rugosa | Rorug03G0127200 Rorug04G0092400 Rorug04G0092500 |
| rosa_samantha | Rh3AG179900 Rh3BG205800 Rh3CG202900 Rh3DG169900 Rh4AG155600 Rh4BG153800 Rh4CG164600 Rh4DG148500 |
| rosa_wichuraiana | Rw3G016270 Rw4G012710 Rw4G012730 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 290 |
| Acc16I | TGCGCA | 1 cut(s) | 126 |
| AccB1I | GGYRCC | 3 cut(s) | 668, 1812, 1981 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 659 |
| AccI | GTMKAC | 1 cut(s) | 2362 |
| AccII | CGCG | 1 cut(s) | 54 |
| AccIII | TCCGGA | 1 cut(s) | 493 |
| AciI | CCGC | 6 cut(s) | 32, 54, 267, 439, 476, 1130 |
| AclWI | GGATC | 8 cut(s) | 634, 1356, 1726, 1955, 2276, 2345, 2801, 2907 |
| AcoI | YGGCCR | 1 cut(s) | 69 |
| AcsI | RAATTY | 2 cut(s) | 1201, 2264 |
| AcuI | CTGAAG | 4 cut(s) | 220, 1041, 1575, 2670 |
| AcyI | GRCGYC | 1 cut(s) | 1813 |
| AfaI | GTAC | 8 cut(s) | 1018, 1035, 1233, 1414, 1431, 1463, 2685, 3174 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 193, 409, 659, 743, 1789, 2410, 2435, 2450 |
| AgeI | ACCGGT | 1 cut(s) | 1984 |
| AgsI | TTSAA | 9 cut(s) | 311, 358, 578, 1166, 1925, 2210, 2513, 2707, 2819 |
| AjnI | CCWGG | 1 cut(s) | 622 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 1504, 1536, 1780, 1812, 2916, 2948 |
| Alw21I | GWGCWC | 2 cut(s) | 264, 1405 |
| Alw26I | GTCTC | 4 cut(s) | 208, 293, 1890, 2386 |
| AlwI | GGATC | 8 cut(s) | 634, 1356, 1726, 1955, 2276, 2345, 2801, 2907 |
| Ama87I | CYCGRG | 1 cut(s) | 175 |
| Aor13HI | TCCGGA | 1 cut(s) | 493 |
| AoxI | GGCC | 9 cut(s) | 69, 184, 791, 843, 875, 2147, 2199, 2257, 2467 |
| ApaI | GGGCCC | 1 cut(s) | 2203 |
| ApeKI | GCWGC | 4 cut(s) | 127, 611, 1545, 3161 |
| ApoI | RAATTY | 2 cut(s) | 1201, 2264 |
| AsiGI | ACCGGT | 1 cut(s) | 1984 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 233, 3078 |
| AspA2I | CCTAGG | 2 cut(s) | 191, 368 |
| AspLEI | GCGC | 8 cut(s) | 54, 127, 166, 1332, 1815, 2191, 2571, 2842 |
| AspS9I | GGNCC | 7 cut(s) | 112, 185, 719, 2199, 2200, 2272, 3063 |
| AsuC2I | CCSGG | 2 cut(s) | 296, 2618 |
| AsuHPI | GGTGA | 7 cut(s) | 659, 956, 1772, 2027, 2049, 2749, 2813 |
| AsuII | TTCGAA | 2 cut(s) | 136, 3086 |
| AvaI | CYCGRG | 1 cut(s) | 175 |
| AvaII | GGWCC | 4 cut(s) | 112, 719, 2272, 3063 |
| AvrII | CCTAGG | 2 cut(s) | 191, 368 |
| BaeGI | GKGCMC | 1 cut(s) | 2203 |
| BanI | GGYRCC | 3 cut(s) | 668, 1812, 1981 |
| BanII | GRGCYC | 3 cut(s) | 264, 2203, 2623 |
| BauI | CACGAG | 1 cut(s) | 1914 |
| BbsI | GAAGAC | 5 cut(s) | 288, 680, 808, 892, 1090 |
| Bbv12I | GWGCWC | 2 cut(s) | 264, 1405 |
| BbvI | GCAGC | 4 cut(s) | 139, 598, 1557, 3173 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 116, 150, 369, 403, 584, 618 |
| BciT130I | CCWGG | 1 cut(s) | 624 |
| BclI | TGATCA | 3 cut(s) | 1357, 1438, 2308 |
| BcnI | CCSGG | 2 cut(s) | 296, 2618 |
| BcoDI | GTCTC | 4 cut(s) | 208, 293, 1890, 2386 |
| BfmI | CTRYAG | 1 cut(s) | 723 |
| BfoI | RGCGCY | 3 cut(s) | 1816, 2192, 2843 |
| BisI | GCNGC | 6 cut(s) | 128, 268, 440, 612, 1546, 3162 |
| BlnI | CCTAGG | 2 cut(s) | 191, 368 |
| BlpI | GCTNAGC | 1 cut(s) | 2724 |
| BlsI | GCNGC | 6 cut(s) | 129, 269, 441, 613, 1547, 3163 |
| BmcAI | AGTACT | 3 cut(s) | 1018, 1414, 2685 |
| Bme1390I | CCNGG | 3 cut(s) | 296, 624, 2618 |
| Bme18I | GGWCC | 4 cut(s) | 112, 719, 2272, 3063 |
| BmeT110I | CYCGRG | 1 cut(s) | 175 |
| BmgT120I | GGNCC | 7 cut(s) | 112, 185, 719, 2199, 2200, 2272, 3063 |
| BmrFI | CCNGG | 3 cut(s) | 296, 624, 2618 |
| BmrI | ACTGGG | 2 cut(s) | 2198, 2675 |
| BmuI | ACTGGG | 2 cut(s) | 2198, 2675 |
| BpiI | GAAGAC | 5 cut(s) | 288, 680, 808, 892, 1090 |
| BpmI | CTGGAG | 4 cut(s) | 1205, 1521, 1968, 2524 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2724 |
| Bpu14I | TTCGAA | 2 cut(s) | 136, 3086 |
| BpuEI | CTTGAG | 3 cut(s) | 1203, 1401, 2121 |
| BpuMI | CCSGG | 2 cut(s) | 296, 2618 |
| Bsa29I | ATCGAT | 1 cut(s) | 120 |
| BsaAI | YACGTR | 1 cut(s) | 2279 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1362, 2175 |
| BsaHI | GRCGYC | 1 cut(s) | 1813 |
| BsaI | GGTCTC | 2 cut(s) | 293, 1890 |
| BsaJI | CCNNGG | 6 cut(s) | 191, 276, 368, 622, 1783, 2318 |
| BsaWI | WCCGGW | 4 cut(s) | 103, 493, 1984, 2809 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 475, 505, 519, 549, 1413, 1443 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 193, 409, 659, 743, 1789, 2410, 2435, 2450 |
| Bse118I | RCCGGY | 4 cut(s) | 109, 130, 151, 1984 |
| Bse1I | ACTGG | 8 cut(s) | 290, 664, 1188, 1725, 2204, 2455, 2681, 3018 |
| Bse3DI | GCAATG | 2 cut(s) | 1751, 3105 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1362, 2175 |
| BseAI | TCCGGA | 1 cut(s) | 493 |
| BseBI | CCWGG | 1 cut(s) | 624 |
| BseCI | ATCGAT | 1 cut(s) | 120 |
| BseDI | CCNNGG | 6 cut(s) | 191, 276, 368, 622, 1783, 2318 |
| BseJI | GATNNNNATC | 2 cut(s) | 1362, 2175 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 193, 409, 659, 743, 1789, 2410, 2435, 2450 |
| BseMI | GCAATG | 2 cut(s) | 1751, 3105 |
| BseMII | CTCAG | 5 cut(s) | 352, 1634, 2413, 2715, 3189 |
| BseNI | ACTGG | 8 cut(s) | 290, 664, 1188, 1725, 2204, 2455, 2681, 3018 |
| BseRI | GAGGAG | 2 cut(s) | 23, 425 |
| BseSI | GKGCMC | 1 cut(s) | 2203 |
| BseXI | GCAGC | 4 cut(s) | 139, 598, 1557, 3173 |
| BsgI | GTGCAG | 5 cut(s) | 780, 1596, 2187, 2456, 2571 |
| Bsh1236I | CGCG | 1 cut(s) | 54 |
| Bsh1285I | CGRYCG | 1 cut(s) | 120 |
| BshFI | GGCC | 9 cut(s) | 71, 186, 793, 845, 877, 2149, 2201, 2259, 2469 |
| BshNI | GGYRCC | 3 cut(s) | 668, 1812, 1981 |
| BshTI | ACCGGT | 1 cut(s) | 1984 |
| BshVI | ATCGAT | 1 cut(s) | 120 |
| BsiEI | CGRYCG | 1 cut(s) | 120 |
| BsiHKAI | GWGCWC | 2 cut(s) | 264, 1405 |
| BsiHKCI | CYCGRG | 1 cut(s) | 175 |
| BsiWI | CGTACG | 1 cut(s) | 3172 |
| BslFI | GGGAC | 7 cut(s) | 98, 278, 494, 2277, 2285, 2315, 3076 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 193, 409, 659, 743, 1789, 2410, 2435, 2450 |
| BsmAI | GTCTC | 4 cut(s) | 208, 293, 1890, 2386 |
| BsmFI | GGGAC | 7 cut(s) | 98, 278, 494, 2277, 2285, 2315, 3076 |
| BsmI | GAATGC | 1 cut(s) | 991 |
| BsnI | GGCC | 9 cut(s) | 71, 186, 793, 845, 877, 2149, 2201, 2259, 2469 |
| Bso31I | GGTCTC | 2 cut(s) | 293, 1890 |
| BsoBI | CYCGRG | 1 cut(s) | 175 |
| Bsp119I | TTCGAA | 2 cut(s) | 136, 3086 |
| Bsp120I | GGGCCC | 1 cut(s) | 2199 |
| Bsp1286I | GDGCHC | 4 cut(s) | 264, 1405, 2203, 2623 |
| Bsp13I | TCCGGA | 1 cut(s) | 493 |
| Bsp1407I | TGTACA | 2 cut(s) | 1033, 1231 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2724 |
| Bsp19I | CCATGG | 1 cut(s) | 1783 |
| BspACI | CCGC | 6 cut(s) | 32, 54, 267, 439, 476, 1130 |
| BspANI | GGCC | 9 cut(s) | 71, 186, 793, 845, 877, 2149, 2201, 2259, 2469 |
| BspCNI | CTCAG | 5 cut(s) | 351, 1633, 2412, 2716, 3190 |
| BspDI | ATCGAT | 1 cut(s) | 120 |
| BspEI | TCCGGA | 1 cut(s) | 493 |
| BspFNI | CGCG | 1 cut(s) | 54 |
| BspHI | TCATGA | 4 cut(s) | 565, 1045, 1645, 2902 |
| BspPI | GGATC | 8 cut(s) | 634, 1356, 1726, 1955, 2276, 2345, 2801, 2907 |
| BspQI | GCTCTTC | 1 cut(s) | 3024 |
| BspT104I | TTCGAA | 2 cut(s) | 136, 3086 |
| BspT107I | GGYRCC | 3 cut(s) | 668, 1812, 1981 |
| BspTNI | GGTCTC | 2 cut(s) | 293, 1890 |
| BsrDI | GCAATG | 2 cut(s) | 1751, 3105 |
| BsrFI | RCCGGY | 4 cut(s) | 109, 130, 151, 1984 |
| BsrGI | TGTACA | 2 cut(s) | 1033, 1231 |
| BsrI | ACTGG | 8 cut(s) | 290, 664, 1188, 1725, 2204, 2455, 2681, 3018 |
| BssAI | RCCGGY | 4 cut(s) | 109, 130, 151, 1984 |
| BssECI | CCNNGG | 6 cut(s) | 191, 276, 368, 622, 1783, 2318 |
| BssNI | GRCGYC | 1 cut(s) | 1813 |
| BssSI | CACGAG | 1 cut(s) | 1914 |
| BssT1I | CCWWGG | 5 cut(s) | 191, 276, 368, 1783, 2318 |
| Bst2BI | CACGAG | 1 cut(s) | 1914 |
| Bst2UI | CCWGG | 1 cut(s) | 624 |
| Bst4CI | ACNGT | 7 cut(s) | 321, 460, 1342, 2041, 2101, 2225, 2563 |
| Bst6I | CTCTTC | 3 cut(s) | 2646, 2735, 3024 |
| BstACI | GRCGYC | 1 cut(s) | 1813 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2470 |
| BstAUI | TGTACA | 2 cut(s) | 1033, 1231 |
| BstBAI | YACGTR | 1 cut(s) | 2279 |
| BstBI | TTCGAA | 2 cut(s) | 136, 3086 |
| BstC8I | GCNNGC | 5 cut(s) | 50, 388, 1844, 2471, 2893 |
| BstDEI | CTNAG | 8 cut(s) | 63, 338, 1620, 2399, 2724, 2849, 2979, 3198 |
| BstDSI | CCRYGG | 1 cut(s) | 1783 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 2408, 2433 |
| BstFNI | CGCG | 1 cut(s) | 54 |
| BstH2I | RGCGCY | 3 cut(s) | 1816, 2192, 2843 |
| BstHHI | GCGC | 8 cut(s) | 54, 127, 166, 1332, 1815, 2191, 2571, 2842 |
| BstMAI | GTCTC | 4 cut(s) | 208, 293, 1890, 2386 |
| BstMCI | CGRYCG | 1 cut(s) | 120 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 49, 392, 611, 2129, 2423, 2470, 2575, 2862 |
| BstNI | CCWGG | 1 cut(s) | 624 |
| BstNSI | RCATGY | 2 cut(s) | 1115, 2895 |
| BstSCI | CCNGG | 3 cut(s) | 294, 622, 2616 |
| BstSFI | CTRYAG | 1 cut(s) | 723 |
| BstSLI | GKGCMC | 1 cut(s) | 2203 |
| BstUI | CGCG | 1 cut(s) | 54 |
| BstV1I | GCAGC | 4 cut(s) | 139, 598, 1557, 3173 |
| BstV2I | GAAGAC | 5 cut(s) | 288, 680, 808, 892, 1090 |
| BstX2I | RGATCY | 3 cut(s) | 626, 1348, 2350 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 623, 2593 |
| BstYI | RGATCY | 3 cut(s) | 626, 1348, 2350 |
| Bsu15I | ATCGAT | 1 cut(s) | 120 |
| BsuRI | GGCC | 9 cut(s) | 71, 186, 793, 845, 877, 2149, 2201, 2259, 2469 |
| BsuTUI | ATCGAT | 1 cut(s) | 120 |
| BtgI | CCRYGG | 1 cut(s) | 1783 |
| BtsIMutI | CAGTG | 5 cut(s) | 205, 430, 1181, 1956, 2170 |
| Cac8I | GCNNGC | 5 cut(s) | 50, 388, 1844, 2471, 2893 |
| CciI | TCATGA | 4 cut(s) | 565, 1045, 1645, 2902 |
| CfoI | GCGC | 8 cut(s) | 54, 127, 166, 1332, 1815, 2191, 2571, 2842 |
| Cfr10I | RCCGGY | 4 cut(s) | 109, 130, 151, 1984 |
| Cfr13I | GGNCC | 7 cut(s) | 112, 185, 719, 2199, 2200, 2272, 3063 |
| ClaI | ATCGAT | 1 cut(s) | 120 |
| Csp6I | GTAC | 8 cut(s) | 1017, 1034, 1232, 1413, 1430, 1462, 2684, 3173 |
| CspAI | ACCGGT | 1 cut(s) | 1984 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1170, 1205 |
| CviQI | GTAC | 8 cut(s) | 1017, 1034, 1232, 1413, 1430, 1462, 2684, 3173 |
| DdeI | CTNAG | 8 cut(s) | 63, 338, 1620, 2399, 2724, 2849, 2979, 3198 |
| DinI | GGCGCC | 1 cut(s) | 1814 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 290 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 290 |
| EaeI | YGGCCR | 1 cut(s) | 69 |
| Eam1104I | CTCTTC | 3 cut(s) | 2646, 2735, 3024 |
| EarI | CTCTTC | 3 cut(s) | 2646, 2735, 3024 |
| Ecl136II | GAGCTC | 1 cut(s) | 262 |
| Eco130I | CCWWGG | 5 cut(s) | 191, 276, 368, 1783, 2318 |
| Eco147I | AGGCCT | 5 cut(s) | 793, 877, 2149, 2259, 2469 |
| Eco24I | GRGCYC | 3 cut(s) | 264, 2203, 2623 |
| Eco31I | GGTCTC | 2 cut(s) | 293, 1890 |
| Eco47I | GGWCC | 4 cut(s) | 112, 719, 2272, 3063 |
| Eco53kI | GAGCTC | 1 cut(s) | 262 |
| Eco57I | CTGAAG | 4 cut(s) | 220, 1041, 1575, 2670 |
| Eco88I | CYCGRG | 1 cut(s) | 175 |
| EcoICRI | GAGCTC | 1 cut(s) | 262 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 2408, 2433 |
| EcoO109I | RGGNCCY | 2 cut(s) | 2200, 2272 |
| EcoRII | CCWGG | 1 cut(s) | 622 |
| EcoT14I | CCWWGG | 5 cut(s) | 191, 276, 368, 1783, 2318 |
| EcoT22I | ATGCAT | 3 cut(s) | 2134, 2897, 3105 |
| EcoT38I | GRGCYC | 3 cut(s) | 264, 2203, 2623 |
| EgeI | GGCGCC | 1 cut(s) | 1814 |
| EheI | GGCGCC | 1 cut(s) | 1814 |
| ErhI | CCWWGG | 5 cut(s) | 191, 276, 368, 1783, 2318 |
| FaqI | GGGAC | 7 cut(s) | 98, 278, 494, 2277, 2285, 2315, 3076 |
| FauI | CCCGC | 3 cut(s) | 47, 469, 1123 |
| FbaI | TGATCA | 3 cut(s) | 1357, 1438, 2308 |
| FblI | GTMKAC | 1 cut(s) | 2362 |
| Fnu4HI | GCNGC | 6 cut(s) | 128, 268, 440, 612, 1546, 3162 |
| FriOI | GRGCYC | 3 cut(s) | 264, 2203, 2623 |
| Fsp4HI | GCNGC | 6 cut(s) | 128, 268, 440, 612, 1546, 3162 |
| FspI | TGCGCA | 1 cut(s) | 126 |
| GlaI | GCGC | 8 cut(s) | 53, 126, 165, 1331, 1814, 2190, 2570, 2841 |
| GluI | GCNGC | 6 cut(s) | 128, 268, 440, 612, 1546, 3162 |
| GsuI | CTGGAG | 4 cut(s) | 1205, 1521, 1968, 2524 |
| HaeII | RGCGCY | 3 cut(s) | 1816, 2192, 2843 |
| HaeIII | GGCC | 9 cut(s) | 71, 186, 793, 845, 877, 2149, 2201, 2259, 2469 |
| HhaI | GCGC | 8 cut(s) | 54, 127, 166, 1332, 1815, 2191, 2571, 2842 |
| Hin1I | GRCGYC | 1 cut(s) | 1813 |
| Hin6I | GCGC | 8 cut(s) | 52, 125, 164, 1330, 1813, 2189, 2569, 2840 |
| HinP1I | GCGC | 8 cut(s) | 52, 125, 164, 1330, 1813, 2189, 2569, 2840 |
| HincII | GTYRAC | 2 cut(s) | 1117, 1315 |
| HindII | GTYRAC | 2 cut(s) | 1117, 1315 |
| HindIII | AAGCTT | 1 cut(s) | 2883 |
| HphI | GGTGA | 7 cut(s) | 659, 956, 1772, 2027, 2049, 2749, 2813 |
| Hpy166II | GTNNAC | 3 cut(s) | 1117, 1315, 2363 |
| Hpy8I | GTNNAC | 3 cut(s) | 1117, 1315, 2363 |
| Hpy99I | CGWCG | 1 cut(s) | 218 |
| HpyAV | CCTTC | 4 cut(s) | 1016, 1946, 2404, 3093 |
| HpyCH4III | ACNGT | 7 cut(s) | 321, 460, 1342, 2041, 2101, 2225, 2563 |
| HpyCH4IV | ACGT | 3 cut(s) | 2278, 2582, 3175 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 49, 392, 611, 2129, 2423, 2470, 2575, 2862 |
| HpyF3I | CTNAG | 8 cut(s) | 63, 338, 1620, 2399, 2724, 2849, 2979, 3198 |
| HpySE526I | ACGT | 3 cut(s) | 2278, 2582, 3175 |
| Hsp92I | GRCGYC | 1 cut(s) | 1813 |
| HspAI | GCGC | 8 cut(s) | 52, 125, 164, 1330, 1813, 2189, 2569, 2840 |
| KasI | GGCGCC | 1 cut(s) | 1812 |
| Kpn2I | TCCGGA | 1 cut(s) | 493 |
| Ksp22I | TGATCA | 3 cut(s) | 1357, 1438, 2308 |
| LguI | GCTCTTC | 1 cut(s) | 3024 |
| LmnI | GCTCC | 6 cut(s) | 106, 148, 1177, 1408, 1542, 2626 |
| Lsp1109I | GCAGC | 4 cut(s) | 139, 598, 1557, 3173 |
| MaeII | ACGT | 3 cut(s) | 2278, 2582, 3175 |
| MaeIII | GTNAC | 4 cut(s) | 1247, 2015, 2640, 2665 |
| MfeI | CAATTG | 1 cut(s) | 1920 |
| MflI | RGATCY | 3 cut(s) | 626, 1348, 2350 |
| MhlI | GDGCHC | 4 cut(s) | 264, 1405, 2203, 2623 |
| Mly113I | GGCGCC | 1 cut(s) | 1813 |
| MlyI | GAGTC | 4 cut(s) | 249, 1252, 2651, 3162 |
| MmeI | TCCRAC | 2 cut(s) | 505, 1365 |
| Mph1103I | ATGCAT | 3 cut(s) | 2134, 2897, 3105 |
| MroI | TCCGGA | 1 cut(s) | 493 |
| MroXI | GAANNNNTTC | 2 cut(s) | 233, 3078 |
| MseI | TTAA | 4 cut(s) | 2006, 2075, 2913, 2955 |
| MspA1I | CMGCKG | 1 cut(s) | 3164 |
| MspR9I | CCNGG | 3 cut(s) | 296, 624, 2618 |
| MunI | CAATTG | 1 cut(s) | 1920 |
| Mva1269I | GAATGC | 1 cut(s) | 991 |
| MvaI | CCWGG | 1 cut(s) | 624 |
| MvnI | CGCG | 1 cut(s) | 54 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 49, 392, 611, 2129, 2423, 2470, 2575, 2862 |
| NarI | GGCGCC | 1 cut(s) | 1813 |
| NciI | CCSGG | 2 cut(s) | 296, 2618 |
| NcoI | CCATGG | 1 cut(s) | 1783 |
| NmuCI | GTSAC | 2 cut(s) | 2015, 2640 |
| NsbI | TGCGCA | 1 cut(s) | 126 |
| NsiI | ATGCAT | 3 cut(s) | 2134, 2897, 3105 |
| NspI | RCATGY | 2 cut(s) | 1115, 2895 |
| NspV | TTCGAA | 2 cut(s) | 136, 3086 |
| PaeI | GCATGC | 1 cut(s) | 2895 |
| PaeR7I | CTCGAG | 1 cut(s) | 175 |
| PagI | TCATGA | 4 cut(s) | 565, 1045, 1645, 2902 |
| PceI | AGGCCT | 5 cut(s) | 793, 877, 2149, 2259, 2469 |
| PciSI | GCTCTTC | 1 cut(s) | 3024 |
| PctI | GAATGC | 1 cut(s) | 991 |
| PdmI | GAANNNNTTC | 2 cut(s) | 233, 3078 |
| Pfl23II | CGTACG | 1 cut(s) | 3172 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 659 |
| PfoI | TCCNGGA | 1 cut(s) | 294 |
| PinAI | ACCGGT | 1 cut(s) | 1984 |
| PkrI | GCNGC | 6 cut(s) | 129, 269, 441, 613, 1547, 3163 |
| Ple19I | CGATCG | 1 cut(s) | 120 |
| PleI | GAGTC | 4 cut(s) | 248, 1252, 2651, 3162 |
| PluTI | GGCGCC | 1 cut(s) | 1816 |
| PpsI | GAGTC | 4 cut(s) | 248, 1252, 2651, 3162 |
| Ppu21I | YACGTR | 1 cut(s) | 2279 |
| PpuMI | RGGWCCY | 1 cut(s) | 2272 |
| Psp124BI | GAGCTC | 1 cut(s) | 264 |
| Psp5II | RGGWCCY | 1 cut(s) | 2272 |
| Psp6I | CCWGG | 1 cut(s) | 622 |
| PspGI | CCWGG | 1 cut(s) | 622 |
| PspLI | CGTACG | 1 cut(s) | 3172 |
| PspOMI | GGGCCC | 1 cut(s) | 2199 |
| PspPI | GGNCC | 7 cut(s) | 112, 185, 719, 2199, 2200, 2272, 3063 |
| PspPPI | RGGWCCY | 1 cut(s) | 2272 |
| PspXI | VCTCGAGB | 1 cut(s) | 175 |
| PsuI | RGATCY | 3 cut(s) | 626, 1348, 2350 |
| PvuI | CGATCG | 1 cut(s) | 120 |
| PvuII | CAGCTG | 1 cut(s) | 3164 |
| RsaI | GTAC | 8 cut(s) | 1018, 1035, 1233, 1414, 1431, 1463, 2685, 3174 |
| RsaNI | GTAC | 8 cut(s) | 1017, 1034, 1232, 1413, 1430, 1462, 2684, 3173 |
| SacI | GAGCTC | 1 cut(s) | 264 |
| SapI | GCTCTTC | 1 cut(s) | 3024 |
| SaqAI | TTAA | 4 cut(s) | 2006, 2075, 2913, 2955 |
| SatI | GCNGC | 6 cut(s) | 128, 268, 440, 612, 1546, 3162 |
| Sau96I | GGNCC | 7 cut(s) | 112, 185, 719, 2199, 2200, 2272, 3063 |
| ScaI | AGTACT | 3 cut(s) | 1018, 1414, 2685 |
| SchI | GAGTC | 4 cut(s) | 249, 1252, 2651, 3162 |
| ScrFI | CCNGG | 3 cut(s) | 296, 624, 2618 |
| SduI | GDGCHC | 4 cut(s) | 264, 1405, 2203, 2623 |
| SfcI | CTRYAG | 1 cut(s) | 723 |
| SfoI | GGCGCC | 1 cut(s) | 1814 |
| Sfr274I | CTCGAG | 1 cut(s) | 175 |
| SfuI | TTCGAA | 2 cut(s) | 136, 3086 |
| SinI | GGWCC | 4 cut(s) | 112, 719, 2272, 3063 |
| SlaI | CTCGAG | 1 cut(s) | 175 |
| SmlI | CTYRAG | 4 cut(s) | 175, 1218, 1416, 2136 |
| SmoI | CTYRAG | 4 cut(s) | 175, 1218, 1416, 2136 |
| SphI | GCATGC | 1 cut(s) | 2895 |
| SseBI | AGGCCT | 5 cut(s) | 793, 877, 2149, 2259, 2469 |
| SsiI | CCGC | 6 cut(s) | 32, 54, 267, 439, 476, 1130 |
| SspDI | GGCGCC | 1 cut(s) | 1812 |
| SstI | GAGCTC | 1 cut(s) | 264 |
| StuI | AGGCCT | 5 cut(s) | 793, 877, 2149, 2259, 2469 |
| StyD4I | CCNGG | 3 cut(s) | 294, 622, 2616 |
| StyI | CCWWGG | 5 cut(s) | 191, 276, 368, 1783, 2318 |
| TaaI | ACNGT | 7 cut(s) | 321, 460, 1342, 2041, 2101, 2225, 2563 |
| TaiI | ACGT | 3 cut(s) | 2281, 2585, 3178 |
| TaqI | TCGA | 9 cut(s) | 120, 136, 176, 213, 379, 1070, 1474, 1849, 3086 |
| TaqII | GACCGA | 2 cut(s) | 317, 3080 |
| TatI | WGTACW | 5 cut(s) | 1016, 1033, 1231, 1412, 2683 |
| TauI | GCSGC | 2 cut(s) | 270, 442 |
| Tru1I | TTAA | 4 cut(s) | 2006, 2075, 2913, 2955 |
| Tru9I | TTAA | 4 cut(s) | 2006, 2075, 2913, 2955 |
| TscAI | CASTG | 5 cut(s) | 205, 430, 1188, 1963, 2170 |
| TseFI | GTSAC | 2 cut(s) | 2015, 2640 |
| TseI | GCWGC | 4 cut(s) | 127, 611, 1545, 3161 |
| Tsp45I | GTSAC | 2 cut(s) | 2015, 2640 |
| TspGWI | ACGGA | 2 cut(s) | 1190, 2279 |
| TspRI | CASTG | 5 cut(s) | 205, 430, 1188, 1963, 2170 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 659 |
| VpaK11BI | GGWCC | 4 cut(s) | 112, 719, 2272, 3063 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 2408, 2433 |
| XapI | RAATTY | 2 cut(s) | 1201, 2264 |
| XbaI | TCTAGA | 1 cut(s) | 1487 |
| XceI | RCATGY | 2 cut(s) | 1115, 2895 |
| XhoI | CTCGAG | 1 cut(s) | 175 |
| XmaJI | CCTAGG | 2 cut(s) | 191, 368 |
| XmiI | GTMKAC | 1 cut(s) | 2362 |
| XmnI | GAANNNNTTC | 2 cut(s) | 233, 3078 |
| ZrmI | AGTACT | 3 cut(s) | 1018, 1414, 2685 |
| Zsp2I | ATGCAT | 3 cut(s) | 2134, 2897, 3105 |