pycom09g00800

WD40 repeats

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Reverse (-)
626231 .. 630599
4369 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g00800.10

Sequence Viewer

Length: 1866 bp
ATGGAAAGTGCAGGGAGTAGTAACAGTTATGCATGTCCACCGTTGTCAAATCAAGATGGGGAGAAAGGATCATTTGTTTCAGATCATCATACACAGCAGAATTATGGACAGGAGCCTCATAACAGTTATACTTGTCCACCGTTGTTGAATCAAGATGGGGAGAAAGGACCACTTGTTGATCATCATACACATCAGAATTCTGGACAGGATCCTCTTAATAGTTGTACATCCCCACCGCTGTTGAATCAAGATGGGGAGAAGGGACCACCTGTTTCAGATCATCACACACAGCAGAATTCTGGACATGATCCTCAAACAAGCAAAAATGTTCAAAATAATGGTTACTCTGAAACTGGCTCGACCAGATGTTCAGTTCCGACAGATGTAGCATTGCCACGAATTGTATTATGCCTGGCTCACCATGGAAAGGTTGCCTGGGATGTGAAATGGCGTCCTCTTAATGAACGTGTTTCCAAAAGCAAGCATCGGATGGGCTATCTTGCTGTGCTGTCAGGAAATGGGTCTCTGGAAGTGTGGGATGTTCCTCTTCCTCATGCAATTGAAGTTATTTATTCTTCTTCATGTGGTGACGGCATCGATCCTCGCTTTGTAAAATTAGCACCAGTTTTCAGATGCTCAATGTTGAAGTGTGGTGGTGAAAAGAGCATCCCTCTTACCGTGGAATGGTCACCTTCACCACCTTATGATTACCTACTTGTTGGATGCCATGATGGAACGGTTGCTTTATGGAAGTTTTCAGCAAGTAATGCATCTCAAGATACAAGGCCTTTACTTTGCTTCAGTGCAGATACAAATCCAATAAGGGCACTTGCTTGGGCCCCGGCTGAAAGCAATTCAGAGGGTGCCCATCTTATAGCTACTGGTGGACATGGAGGCCTAAAATTTTGGGACCTGCGTGATCGATTCGGTCCATTGTGGGACCTCGATCATTTACCAAGGTTCATATATAGTCTGAATTGGCTTCCAGATCCAAGGTGTGTTCTTTTATCCTTTGATGATGGAACAATGAAAGCTATCAGCTTGGTGAAGGCTGCATCCGATGACCCTGTAACAGGAAGGGTTGGAACAAAACAACCGGGCCTGCATAATCTCAGCTGTTTGCCTTTTGCTATCTGGAGTGTTCATGCCTCGCGATTAACAGGTATGGTTGCATATTGTGGTGCAGATGGAACTGTTCTTCGCTTCCAGCTTACAACTAAATCTCTGGAGAAAGATCCTCGACGAAATCGAGCCCCACATTTTCTGTGTGTGTCATTGACAATGGAGGAATCTGCTGTAACCATCAATACTCCAGTATCAAATTCCCCTTTCCCACTGAAGGTAGCTCGTAACAATGCCGAGTCAAACAAAGTGAAAACTACTAATGATAAGATGGCAAAAGATAACACATCTGAAGATCAAAGTTTAGGTATTGAATTGGAAGCTGGGGGAGAAATGGCACCTCTCAAAAGCAAAAAAACACAGAAATCCAAGTCCAGTATGAAAAAACCAGATGATGACCGGGCATTGGTATGCATAGATGAAGAGCCGACTACTACGCAGGAAGAAGAAACTGGGGCGGCTTCTCTCGAAAGCAAAAAACCAAAGAAATCAACGTCCAGCAAGAAAAATGCGGATGATGACCAAGCATTGGTATGCATGGATGAAGAGCCGACTAATCGAGAAGAAGAAACCGTGAAAGAGCCAGAAGTTTTTCCTGACAAAACAGTAGCAATGCATAGAGTGAGATGGAACATGAACAACGGTAGTGAGAGATGGCTGTGTTATGGAGGGGCAGCCGGAATTATTCGGTGTCAAGAGATTGTTTTGTCCGACGTCGATAGGGCGTGGGCTGCAAAGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

622

Amino Acids

68.09

Weight (kDa)

6.04

Isoelectric Point (pI)

39.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1839
Acc36I ACCTGC 1 cut(s) 921
AccB1I GGYRCC 2 cut(s) 863, 1459
AccB7I CCANNNNNTGG 1 cut(s) 1651
AccII CGCG 1 cut(s) 1153
AciI CCGC 3 cut(s) 236, 1580, 1634
AclWI GGATC 7 cut(s) 76, 203, 216, 302, 593, 983, 1229
AcsI RAATTY 4 cut(s) 196, 295, 902, 1321
AcuI CTGAAG 3 cut(s) 784, 1358, 1434
AcyI GRCGYC 2 cut(s) 451, 1836
AfaI GTAC 1 cut(s) 226
AfiI CCNNNNNNNGG 6 cut(s) 427, 684, 1073, 1339, 1528, 1651
AflIII ACRYGT 1 cut(s) 466
AgsI TTSAA 6 cut(s) 148, 244, 332, 563, 646, 1436
AjnI CCWGG 2 cut(s) 411, 434
AluBI AGCT 7 cut(s) 878, 1034, 1041, 1116, 1210, 1346, 1445
AluI AGCT 7 cut(s) 878, 1034, 1041, 1116, 1210, 1346, 1445
Alw26I GTCTC 1 cut(s) 528
AlwI GGATC 7 cut(s) 76, 203, 216, 302, 593, 983, 1229
AoxI GGCC 4 cut(s) 785, 837, 895, 1099
ApaI GGGCCC 1 cut(s) 841
ApeKI GCWGC 3 cut(s) 1052, 1796, 1853
ApoI RAATTY 4 cut(s) 196, 295, 902, 1321
Asp700I GAANNNNTTC 1 cut(s) 1713
AspS9I GGNCC 8 cut(s) 167, 263, 837, 838, 910, 929, 940, 1099
AsuC2I CCSGG 3 cut(s) 842, 1098, 1523
AsuHPI GGTGA 6 cut(s) 410, 599, 668, 681, 687, 1057
AvaII GGWCC 5 cut(s) 167, 263, 910, 929, 940
BaeGI GKGCMC 3 cut(s) 829, 841, 868
BaeI ACNNNNGTAYC 2 cut(s) 1299, 1332
BamHI GGATCC 1 cut(s) 208
BanI GGYRCC 2 cut(s) 863, 1459
BanII GRGCYC 2 cut(s) 841, 1255
BbvI GCAGC 3 cut(s) 1039, 1808, 1840
BceAI ACGGC 1 cut(s) 607
BciT130I CCWGG 2 cut(s) 413, 436
BclI TGATCA 1 cut(s) 178
BcnI CCSGG 3 cut(s) 842, 1098, 1523
BcoDI GTCTC 1 cut(s) 528
BfuAI ACCTGC 1 cut(s) 921
BisI GCNGC 4 cut(s) 1053, 1581, 1797, 1854
BlsI GCNGC 4 cut(s) 1054, 1582, 1798, 1855
Bme1390I CCNGG 5 cut(s) 413, 436, 842, 1098, 1523
Bme18I GGWCC 5 cut(s) 167, 263, 910, 929, 940
BmgT120I GGNCC 8 cut(s) 167, 263, 837, 838, 910, 929, 940, 1099
BmiI GGNNCC 9 cut(s) 114, 210, 264, 839, 840, 865, 911, 941, 1461
BmrFI CCNGG 5 cut(s) 413, 436, 842, 1098, 1523
BmrI ACTGGG 1 cut(s) 1584
BmsI GCATC 7 cut(s) 493, 603, 623, 675, 713, 779, 1064
BmuI ACTGGG 1 cut(s) 1584
BplI GAGNNNNNCTC 2 cut(s) 655, 687
BpmI CTGGAG 3 cut(s) 1156, 1247, 1296
BpuEI CTTGAG 1 cut(s) 759
BpuMI CCSGG 3 cut(s) 842, 1098, 1523
Bsa29I ATCGAT 2 cut(s) 597, 922
BsaBI GATNNNNATC 1 cut(s) 813
BsaHI GRCGYC 2 cut(s) 451, 1836
BsaI GGTCTC 1 cut(s) 528
BsaJI CCNNGG 6 cut(s) 421, 435, 678, 840, 956, 992
Bsc4I CCNNNNNNNGG 6 cut(s) 427, 684, 1073, 1339, 1528, 1651
Bse1I ACTGG 6 cut(s) 358, 623, 886, 1313, 1497, 1579
Bse3DI GCAATG 2 cut(s) 389, 1740
Bse8I GATNNNNATC 1 cut(s) 813
BseBI CCWGG 2 cut(s) 413, 436
BseCI ATCGAT 2 cut(s) 597, 922
BseDI CCNNGG 6 cut(s) 421, 435, 678, 840, 956, 992
BseGI GGATG 9 cut(s) 227, 445, 495, 544, 666, 728, 1055, 1642, 1669
BseJI GATNNNNATC 1 cut(s) 813
BseLI CCNNNNNNNGG 6 cut(s) 427, 684, 1073, 1339, 1528, 1651
BseMI GCAATG 2 cut(s) 389, 1740
BseMII CTCAG 1 cut(s) 1126
BseNI ACTGG 6 cut(s) 358, 623, 886, 1313, 1497, 1579
BseSI GKGCMC 3 cut(s) 829, 841, 868
BseXI GCAGC 3 cut(s) 1039, 1808, 1840
BseYI CCCAGC 1 cut(s) 1445
BsgI GTGCAG 3 cut(s) 30, 825, 1203
Bsh1236I CGCG 1 cut(s) 1153
BshFI GGCC 4 cut(s) 787, 839, 897, 1101
BshNI GGYRCC 2 cut(s) 863, 1459
BshVI ATCGAT 2 cut(s) 597, 922
BsiSI CCGG 4 cut(s) 842, 1097, 1522, 1800
BslFI GGGAC 3 cut(s) 276, 923, 953
BslI CCNNNNNNNGG 6 cut(s) 427, 684, 1073, 1339, 1528, 1651
BsmAI GTCTC 1 cut(s) 528
BsmFI GGGAC 3 cut(s) 276, 923, 953
BsnI GGCC 4 cut(s) 787, 839, 897, 1101
Bso31I GGTCTC 1 cut(s) 528
Bsp120I GGGCCC 1 cut(s) 837
Bsp1286I GDGCHC 4 cut(s) 829, 841, 868, 1255
Bsp1407I TGTACA 1 cut(s) 224
Bsp19I CCATGG 1 cut(s) 421
Bsp68I TCGCGA 1 cut(s) 1153
BspACI CCGC 3 cut(s) 236, 1580, 1634
BspANI GGCC 4 cut(s) 787, 839, 897, 1101
BspCNI CTCAG 1 cut(s) 1125
BspDI ATCGAT 2 cut(s) 597, 922
BspFNI CGCG 1 cut(s) 1153
BspLI GGNNCC 9 cut(s) 114, 210, 264, 839, 840, 865, 911, 941, 1461
BspMI ACCTGC 1 cut(s) 921
BspPI GGATC 7 cut(s) 76, 203, 216, 302, 593, 983, 1229
BspQI GCTCTTC 2 cut(s) 1539, 1662
BspT107I GGYRCC 2 cut(s) 863, 1459
BspTNI GGTCTC 1 cut(s) 528
BsrDI GCAATG 2 cut(s) 389, 1740
BsrGI TGTACA 1 cut(s) 224
BsrI ACTGG 6 cut(s) 358, 623, 886, 1313, 1497, 1579
BssECI CCNNGG 6 cut(s) 421, 435, 678, 840, 956, 992
BssNI GRCGYC 2 cut(s) 451, 1836
BssT1I CCWWGG 3 cut(s) 421, 956, 992
Bst2UI CCWGG 2 cut(s) 413, 436
Bst6I CTCTTC 3 cut(s) 552, 1539, 1662
BstACI GRCGYC 2 cut(s) 451, 1836
BstAPI GCANNNNNTGC 1 cut(s) 767
BstAUI TGTACA 1 cut(s) 224
BstC8I GCNNGC 2 cut(s) 482, 1103
BstDEI CTNAG 1 cut(s) 1112
BstDSI CCRYGG 2 cut(s) 421, 678
BstEII GGTNACC 1 cut(s) 687
BstENI CCTNNNNNAGG 1 cut(s) 1071
BstF5I GGATG 9 cut(s) 227, 445, 495, 544, 666, 728, 1055, 1642, 1669
BstFNI CGCG 1 cut(s) 1153
BstMAI GTCTC 1 cut(s) 528
BstMWI GCNNNNNNNGC 2 cut(s) 767, 1853
BstNI CCWGG 2 cut(s) 413, 436
BstNSI RCATGY 1 cut(s) 36
BstPI GGTNACC 1 cut(s) 687
BstSCI CCNGG 5 cut(s) 411, 434, 840, 1096, 1521
BstSLI GKGCMC 3 cut(s) 829, 841, 868
BstUI CGCG 1 cut(s) 1153
BstV1I GCAGC 3 cut(s) 1039, 1808, 1840
BstX2I RGATCY 3 cut(s) 208, 988, 1234
BstYI RGATCY 3 cut(s) 208, 988, 1234
Bsu15I ATCGAT 2 cut(s) 597, 922
BsuRI GGCC 4 cut(s) 787, 839, 897, 1101
BsuTUI ATCGAT 2 cut(s) 597, 922
BtgI CCRYGG 2 cut(s) 421, 678
BtsCI GGATG 9 cut(s) 227, 445, 495, 544, 666, 728, 1055, 1642, 1669
BtsIMutI CAGTG 2 cut(s) 808, 1334
BtuMI TCGCGA 1 cut(s) 1153
BveI ACCTGC 1 cut(s) 921
Cac8I GCNNGC 2 cut(s) 482, 1103
Cfr13I GGNCC 8 cut(s) 167, 263, 837, 838, 910, 929, 940, 1099
ClaI ATCGAT 2 cut(s) 597, 922
CseI GACGC 1 cut(s) 440
Csp6I GTAC 1 cut(s) 225
CspCI CAANNNNNGTGG 4 cut(s) 126, 161, 222, 257
CviQI GTAC 1 cut(s) 225
DdeI CTNAG 1 cut(s) 1112
Eam1104I CTCTTC 3 cut(s) 552, 1539, 1662
EarI CTCTTC 3 cut(s) 552, 1539, 1662
Eco130I CCWWGG 3 cut(s) 421, 956, 992
Eco147I AGGCCT 2 cut(s) 787, 897
Eco24I GRGCYC 2 cut(s) 841, 1255
Eco31I GGTCTC 1 cut(s) 528
Eco47I GGWCC 5 cut(s) 167, 263, 910, 929, 940
Eco57I CTGAAG 3 cut(s) 784, 1358, 1434
Eco91I GGTNACC 1 cut(s) 687
EcoNI CCTNNNNNAGG 1 cut(s) 1071
EcoO109I RGGNCCY 3 cut(s) 838, 910, 940
EcoO65I GGTNACC 1 cut(s) 687
EcoRI GAATTC 2 cut(s) 196, 295
EcoRII CCWGG 2 cut(s) 411, 434
EcoT14I CCWWGG 3 cut(s) 421, 956, 992
EcoT22I ATGCAT 5 cut(s) 34, 772, 1538, 1661, 1740
EcoT38I GRGCYC 2 cut(s) 841, 1255
ErhI CCWWGG 3 cut(s) 421, 956, 992
FalI AAGNNNNNCTT 2 cut(s) 156, 188
FaqI GGGAC 3 cut(s) 276, 923, 953
FbaI TGATCA 1 cut(s) 178
Fnu4HI GCNGC 4 cut(s) 1053, 1581, 1797, 1854
FokI GGATG 9 cut(s) 214, 452, 502, 551, 653, 735, 1042, 1649, 1676
FriOI GRGCYC 2 cut(s) 841, 1255
Fsp4HI GCNGC 4 cut(s) 1053, 1581, 1797, 1854
GluI GCNGC 4 cut(s) 1053, 1581, 1797, 1854
GsaI CCCAGC 1 cut(s) 1449
GsuI CTGGAG 3 cut(s) 1156, 1247, 1296
HaeIII GGCC 4 cut(s) 787, 839, 897, 1101
HapII CCGG 4 cut(s) 842, 1097, 1522, 1800
HgaI GACGC 1 cut(s) 440
Hin1I GRCGYC 2 cut(s) 451, 1836
HinfI GANTC 5 cut(s) 148, 244, 924, 1289, 1361
HpaII CCGG 4 cut(s) 842, 1097, 1522, 1800
HphI GGTGA 6 cut(s) 410, 599, 668, 681, 687, 1057
Hpy166II GTNNAC 3 cut(s) 38, 137, 887
Hpy8I GTNNAC 3 cut(s) 38, 137, 887
Hpy99I CGWCG 3 cut(s) 1245, 1838, 1841
HpyAV CCTTC 5 cut(s) 253, 702, 1042, 1071, 1333
HpyCH4IV ACGT 3 cut(s) 466, 1616, 1836
HpyF10VI GCNNNNNNNGC 2 cut(s) 767, 1853
HpyF3I CTNAG 1 cut(s) 1112
HpySE526I ACGT 3 cut(s) 466, 1616, 1836
Hsp92I GRCGYC 2 cut(s) 451, 1836
Ksp22I TGATCA 1 cut(s) 178
LguI GCTCTTC 2 cut(s) 1539, 1662
LmnI GCTCC 1 cut(s) 112
Lsp1109I GCAGC 3 cut(s) 1039, 1808, 1840
LweI GCATC 7 cut(s) 493, 603, 623, 675, 713, 779, 1064
MaeII ACGT 3 cut(s) 466, 1616, 1836
MaeIII GTNAC 7 cut(s) 20, 341, 587, 687, 1069, 1297, 1349
MfeI CAATTG 1 cut(s) 558
MflI RGATCY 3 cut(s) 208, 988, 1234
MhlI GDGCHC 4 cut(s) 829, 841, 868, 1255
MlyI GAGTC 1 cut(s) 1370
MmeI TCCRAC 4 cut(s) 401, 700, 1063, 1857
Mph1103I ATGCAT 5 cut(s) 34, 772, 1538, 1661, 1740
MroXI GAANNNNTTC 1 cut(s) 1713
MseI TTAA 3 cut(s) 216, 459, 1157
MslI CAYNNNNRTG 2 cut(s) 1531, 1654
MspA1I CMGCKG 2 cut(s) 238, 1116
MspI CCGG 4 cut(s) 842, 1097, 1522, 1800
MspR9I CCNGG 5 cut(s) 413, 436, 842, 1098, 1523
MunI CAATTG 1 cut(s) 558
MvaI CCWGG 2 cut(s) 413, 436
MvnI CGCG 1 cut(s) 1153
MwoI GCNNNNNNNGC 2 cut(s) 767, 1853
NciI CCSGG 3 cut(s) 842, 1098, 1523
NcoI CCATGG 1 cut(s) 421
NlaIV GGNNCC 9 cut(s) 114, 210, 264, 839, 840, 865, 911, 941, 1461
NmeAIII GCCGAG 1 cut(s) 1384
NmuCI GTSAC 2 cut(s) 587, 687
NruI TCGCGA 1 cut(s) 1153
NsiI ATGCAT 5 cut(s) 34, 772, 1538, 1661, 1740
NspI RCATGY 1 cut(s) 36
PceI AGGCCT 2 cut(s) 787, 897
PciSI GCTCTTC 2 cut(s) 1539, 1662
PcsI WCGNNNNNNNCGW 1 cut(s) 1246
PdmI GAANNNNTTC 1 cut(s) 1713
PfeI GAWTC 4 cut(s) 148, 244, 924, 1289
PflMI CCANNNNNTGG 1 cut(s) 1651
PkrI GCNGC 4 cut(s) 1054, 1582, 1798, 1855
PleI GAGTC 1 cut(s) 1369
PpsI GAGTC 1 cut(s) 1369
PpuMI RGGWCCY 2 cut(s) 910, 940
Psp5II RGGWCCY 2 cut(s) 910, 940
Psp6I CCWGG 2 cut(s) 411, 434
PspEI GGTNACC 1 cut(s) 687
PspFI CCCAGC 1 cut(s) 1445
PspGI CCWGG 2 cut(s) 411, 434
PspN4I GGNNCC 9 cut(s) 114, 210, 264, 839, 840, 865, 911, 941, 1461
PspOMI GGGCCC 1 cut(s) 837
PspPI GGNCC 8 cut(s) 167, 263, 837, 838, 910, 929, 940, 1099
PspPPI RGGWCCY 2 cut(s) 910, 940
PsuI RGATCY 3 cut(s) 208, 988, 1234
PvuII CAGCTG 1 cut(s) 1116
RruI TCGCGA 1 cut(s) 1153
RsaI GTAC 1 cut(s) 226
RsaNI GTAC 1 cut(s) 225
RseI CAYNNNNRTG 2 cut(s) 1531, 1654
SapI GCTCTTC 2 cut(s) 1539, 1662
SaqAI TTAA 3 cut(s) 216, 459, 1157
SatI GCNGC 4 cut(s) 1053, 1581, 1797, 1854
Sau96I GGNCC 8 cut(s) 167, 263, 837, 838, 910, 929, 940, 1099
SchI GAGTC 1 cut(s) 1370
ScrFI CCNGG 5 cut(s) 413, 436, 842, 1098, 1523
SduI GDGCHC 4 cut(s) 829, 841, 868, 1255
SfaNI GCATC 7 cut(s) 493, 603, 623, 675, 713, 779, 1064
SinI GGWCC 5 cut(s) 167, 263, 910, 929, 940
SmiMI CAYNNNNRTG 2 cut(s) 1531, 1654
SmlI CTYRAG 1 cut(s) 774
SmoI CTYRAG 1 cut(s) 774
SseBI AGGCCT 2 cut(s) 787, 897
SsiI CCGC 3 cut(s) 236, 1580, 1634
StuI AGGCCT 2 cut(s) 787, 897
StyD4I CCNGG 5 cut(s) 411, 434, 840, 1096, 1521
StyI CCWWGG 3 cut(s) 421, 956, 992
TaiI ACGT 3 cut(s) 469, 1619, 1839
TaqI TCGA 9 cut(s) 359, 597, 922, 945, 1240, 1249, 1590, 1681, 1839
TaqII GACCGA 1 cut(s) 917
TatI WGTACW 1 cut(s) 224
TauI GCSGC 1 cut(s) 1583
TfiI GAWTC 4 cut(s) 148, 244, 924, 1289
Tru1I TTAA 3 cut(s) 216, 459, 1157
Tru9I TTAA 3 cut(s) 216, 459, 1157
TscAI CASTG 2 cut(s) 808, 1341
TseFI GTSAC 2 cut(s) 587, 687
TseI GCWGC 3 cut(s) 1052, 1796, 1853
Tsp45I GTSAC 2 cut(s) 587, 687
TspDTI ATGAA 9 cut(s) 477, 570, 952, 1043, 1133, 1517, 1557, 1680, 1772
TspRI CASTG 2 cut(s) 808, 1341
Van91I CCANNNNNTGG 1 cut(s) 1651
VpaK11BI GGWCC 5 cut(s) 167, 263, 910, 929, 940
XagI CCTNNNNNAGG 1 cut(s) 1071
XapI RAATTY 4 cut(s) 196, 295, 902, 1321
XceI RCATGY 1 cut(s) 36
XmnI GAANNNNTTC 1 cut(s) 1713
ZraI GACGTC 1 cut(s) 1837
Zsp2I ATGCAT 5 cut(s) 34, 772, 1538, 1661, 1740
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.