Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001616.1

Orthogroup ID

OG0002231

Physical Location & Seq

Genomic Coordinates Reverse (-)

280638 .. 289291

Gene Structure 8654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001616.1_g000057.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3189 bp

atgaatgaagaggaagtggaacctccactcggggttctattgggtcgaaagcgcgggaaaacaaagtccgccaagagagcaagccaagtaacaccgcacagcatagagccacttcaaatcgaaccagagcctgtcccgatcgatgcggagccaattcaaattgagtcagagccagttgcaattgagccagagaactcaaggaatggcgctagggttagtgtttcgatgttcgatgactcggtggagaatcactttagagtcatgcacacgatttctgagctctgtggcgacgccgaagacgagccactcccggtgagcgacattcaacgcttatcatcctccaccactttcttgagggaatgggcagattttaagtatgaacctagagatgttcgattcgcttgcgaagcagaaagctctgatgaggaggatgttgtcagtaggataaacttgcggcagttttcttctgcaactgttccacagaacgaggcggggaacacatcttctccagagttgagacaagactatgtgatgtatgttggagggcctgtttgggcattggattggtgtcctagagttcatgaaagtcacgaccgtcatgcaaagtgcgagtttattgccattgctgctcatccccctggatcttcttatcacaagttaggtgagccacttactggcagaggtgccattcagatatggtgtcttctaaatgctagtgtaaatgatgaaggtgttcctataggagacaaaccaaaaggaggaaataaaaggagtggagccacagaaaaatgcactgaacaaaaaaggggaagacccagaaagaagccattagaagaatctgttggcaaagaggccacagaagaaaaactgtctgaaccaaaaaggccgagaggaagacctagaaagaagccaatagaagaatctattgacaaagagggcaaagaagagaaatcaactcaaccaaagaggcctagaggaagacctagaaataaatcaatagaagaatctgttgacaacttggatggtctcaccaattgtgatgaggttcttgctattgattatccaaaggattcatctgagttgcattctatggattgtcttcctgcaaatactcaaggaaattttgtacaagaatatcatggcaaaaagcaactaagttatgggcagagtcaaccgaagaagcctagaggaagacccagaaagaagccaataaaagaacctgttgacaatttagatgggggcaacaataattttgaggttcttgccattgaataccaaaaggaatcactggagttgcattctacggattgtcttcttgcaaatactcaagtggacgctgtacaagaaacaagttacaagcagactcgatcaaagaggcctagaggaatacatggaaagaagccaatagaagaatctgttgaaaacttggatgacagcagcaatacgggtgaggctcttgatgatcaatatccaaaggaattattggagttggagggcatggattgctctcctgaaagtactcaaggagatgagttacaagatgatagtggtaagaaaagaaaaacgtacagaaagactcgagcaaagattcctagagaaaaacctggggagaagctagtagaatattctgttgataacttgcatgggagcagccattatgcggaggctcttggagtccaatatctcaaggaaacatcagagttgcatgctatggattgtgttcctgcatttactcaggcgcatgatgtacaagaagctcttaatgaaaaacttgaaagtttcggaccggttccaaaggatgtagcattgccaagaatcatattctgcccagctcaccatggaaaggttgcttgggatgtgaaatggcgtcctcttaatgaacatgattccagatgcgaaatggcatcgaatgggctatcttgctgttctattggggaacgggtctctggaagtgtaagacatatgattacttcttcagacatgatttcctttgttttccagaccttagcttcaccacctcacgattacttaattgccggatgccatgatggaactgttgctatgtggaagttttctgctagtaatgtatctcaagatacaaggcctttactttgtttcagcgcagatacaaatcctattagggcgctttcttgggccccagctcaaagcaattcagacaatgcaaatgttatagctactgctggacatggaggcctaaaattttgggacctacgtgatccattccgtcccttgtgggacatcgatcatataccaaggttcatatatagtctggattggattccagatccaaggtgtgttcttctctcctttgatgatggaacaatgaaacttctcagcttgacaaaggctgcctctgatgcccctgtaacaggaaaaccctttgctggaacaaaacaacagggcctgcacaatcttggttgtttgccttttgctatctggagtgttcaagtatcaagactaacaggtatggttgcatattgtggtgcagatggaactgttctgcgcttccaacttacgtccaatgctgtggagaaagatgctacacgaaaccgggccccacattttctgtgcgtgtcactaactgaagaggactctgttgtgaccatcaataccccagtaccacataatcctttcccgttgaaaacatctcgtaaagctgagccaaacaaagtgaagagagaacatgataagatgacaactacatcacaagatcaagttttagctctttgttacggtgatgatccgggtattgaattagaatctgggaaagaagcagcatctcttagaagcaaaacactcaaatctgcagatgaccaagcattagtatgcatggatcaagagccatttaatacccaagacgaagaaattggagaaaagggtacatctcttaaaggcattgtaaaacagaaatccaagtctagtaagaaaaatacagaggatgaacaagaactggaaggcagagatgaagagctgattaatacgcagagagaaaaaactgggaccgagtatgaagtttttccttccaagcaagtagcaatgcaccgagtgagatggaacatgaacaagggtagtgagagatggttatgctatggaggggcagctggaatagtacgttgtcaagagattgttttgtctgacattgatatgaaatgggcaaggaagaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AT_hook

Protein Analysis

1062

Amino Acids

118.49

Weight (kDa)

5.72

Isoelectric Point (pI)

47.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002231)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19485 AT1G19485
fragaria_vesca	FvH4_6g18260 FvH4_6g18260 FvH4_6g18260 FvH4_6g18260 FvH4_7g02500
malus_domestica	MD09G1081300.v1.1 MD12G1022600.v1.1
prunus_persica	Prupe.7G114200_v2.0.a1 Prupe.7G114200_v2.0.a1
pyrus_communis	pycom09g00800 pycom12g02090
rosa_chinensis	RchiOBHm_Chr3g0472691 RchiOBHm_Chr3g0472701 RchiOBHm_Chr4g0409331
rosa_laevigata	RLG00000008568 RLG00000016132 RLG00000024063
rosa_multiflora	Rmu_co8285783.1_g000001 Rmu_sc0001616.1_g000052 Rmu_sc0001616.1_g000057 Rmu_sc0001851.1_g000016 Rmu_sc0003510.1_g000010 Rmu_sc0003510.1_g000011 Rmu_sc0003510.1_g000012 Rmu_sc0034965.1_g000001
rosa_roxburghii	Rroxscaffold_5G00353840 Rroxscaffold_6G00408710
rosa_rugosa	Rorug03G0127200 Rorug04G0092400 Rorug04G0092500
rosa_samantha	Rh3AG179900 Rh3BG205800 Rh3CG202900 Rh3DG169900 Rh4AG155600 Rh4BG153800 Rh4CG164600 Rh4DG148500
rosa_wichuraiana	Rw3G016270 Rw4G012710 Rw4G012730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	683
AccB7I	CCANNNNNTGG	1 cut(s)	674
AccII	CGCG	1 cut(s)	54
AciI	CCGC	7 cut(s)	54, 69, 95, 146, 454, 491, 1661
AclWI	GGATC	5 cut(s)	649, 2231, 2300, 2756, 2862
AcsI	RAATTY	2 cut(s)	1120, 2219
AcuI	CTGAAG	2 cut(s)	1959, 2625
AcyI	GRCGYC	2 cut(s)	291, 1867
AdeI	CACNNNGTG	1 cut(s)	3067
AfaI	GTAC	8 cut(s)	1128, 1341, 1519, 1568, 1749, 2640, 2902, 3132
AfiI	CCNNNNNNNGG	7 cut(s)	29, 674, 758, 1660, 1843, 2390, 2405
AgeI	ACCGGT	1 cut(s)	1786
AgsI	TTSAA	9 cut(s)	116, 158, 326, 1271, 1421, 1775, 2468, 2662, 2774
AjnI	CCWGG	2 cut(s)	637, 1603
AjuI	GAANNNNNNNTTGG	4 cut(s)	825, 857, 1834, 1866
Alw21I	GWGCWC	1 cut(s)	282
Alw26I	GTCTC	4 cut(s)	511, 738, 1031, 1948
AlwI	GGATC	5 cut(s)	649, 2231, 2300, 2756, 2862
AlwNI	CAGNNNCTG	2 cut(s)	131, 2425
Ama87I	CYCGRG	2 cut(s)	29, 1578
ApaI	GGGCCC	2 cut(s)	2158, 2578
ApeKI	GCWGC	6 cut(s)	626, 1437, 1650, 2369, 2795, 3119
ApoI	RAATTY	2 cut(s)	1120, 2219
AseI	ATTAAT	1 cut(s)	2997
AsiGI	ACCGGT	1 cut(s)	1786
Asp700I	GAANNNNTTC	2 cut(s)	732, 3036
AspLEI	GCGC	6 cut(s)	54, 209, 1741, 2123, 2146, 2526
AspS9I	GGNCC	9 cut(s)	545, 1784, 2154, 2155, 2227, 2422, 2574, 2575, 3021
AsuC2I	CCSGG	3 cut(s)	311, 2573, 2766
AsuHPI	GGTGA	7 cut(s)	325, 674, 1021, 1460, 1826, 2004, 2768
AvaI	CYCGRG	2 cut(s)	29, 1578
AvaII	GGWCC	3 cut(s)	1784, 2227, 3021
BaeGI	GKGCMC	2 cut(s)	2158, 2578
BaeI	ACNNNNGTAYC	2 cut(s)	2622, 2655
BanI	GGYRCC	1 cut(s)	683
BanII	GRGCYC	3 cut(s)	282, 2158, 2578
BbsI	GAAGAC	8 cut(s)	303, 695, 817, 901, 985, 1091, 1198, 1304
Bbv12I	GWGCWC	1 cut(s)	282
BbvI	GCAGC	6 cut(s)	613, 1449, 1662, 2356, 2807, 3131
BccI	CCATC	8 cut(s)	1016, 1229, 2042, 2330, 2504, 2633, 3066, 3093
BcgI	CGANNNNNNTGC	6 cut(s)	384, 418, 581, 599, 615, 633
BciT130I	CCWGG	2 cut(s)	639, 1605
BclI	TGATCA	1 cut(s)	1462
BcnI	CCSGG	3 cut(s)	311, 2573, 2766
BcoDI	GTCTC	4 cut(s)	511, 738, 1031, 1948
BfmI	CTRYAG	2 cut(s)	738, 2826
BfoI	RGCGCY	2 cut(s)	210, 2147
BisI	GCNGC	7 cut(s)	455, 627, 1438, 1651, 2370, 2796, 3120
BlpI	GCTNAGC	1 cut(s)	2679
BlsI	GCNGC	7 cut(s)	456, 628, 1439, 1652, 2371, 2797, 3121
BmcAI	AGTACT	1 cut(s)	1519
Bme1390I	CCNGG	5 cut(s)	311, 639, 1605, 2573, 2766
Bme18I	GGWCC	3 cut(s)	1784, 2227, 3021
BmeT110I	CYCGRG	2 cut(s)	29, 1578
BmgT120I	GGNCC	9 cut(s)	545, 1784, 2154, 2155, 2227, 2422, 2574, 2575, 3021
BmrFI	CCNGG	5 cut(s)	311, 639, 1605, 2573, 2766
BmrI	ACTGGG	2 cut(s)	2630, 3027
BmsI	GCATC	7 cut(s)	133, 1883, 1913, 2030, 2368, 2548, 2807
BmuI	ACTGGG	2 cut(s)	2630, 3027
BpiI	GAAGAC	8 cut(s)	303, 695, 817, 901, 985, 1091, 1198, 1304
BpmI	CTGGAG	3 cut(s)	492, 1310, 2479
Bpu10I	CCTNAGC	1 cut(s)	2005
Bpu1102I	GCTNAGC	1 cut(s)	2679
BpuEI	CTTGAG	7 cut(s)	181, 373, 1098, 1311, 1506, 1670, 2076
BpuMI	CCSGG	3 cut(s)	311, 2573, 2766
Bsa29I	ATCGAT	2 cut(s)	141, 2262
BsaAI	YACGTR	1 cut(s)	2234
BsaBI	GATNNNNATC	2 cut(s)	1467, 2130
BsaHI	GRCGYC	2 cut(s)	291, 1867
BsaI	GGTCTC	2 cut(s)	1031, 1948
BsaJI	CCNNGG	5 cut(s)	637, 1604, 1837, 2273, 2309
BsaWI	WCCGGW	1 cut(s)	1786
BsaXI	ACNNNNNCTCC	4 cut(s)	490, 520, 534, 564
Bsc4I	CCNNNNNNNGG	7 cut(s)	29, 674, 758, 1660, 1843, 2390, 2405
Bse118I	RCCGGY	1 cut(s)	1786
Bse1I	ACTGG	6 cut(s)	173, 679, 1293, 2636, 2976, 3022
Bse3DI	GCAATG	3 cut(s)	621, 1805, 3063
Bse8I	GATNNNNATC	2 cut(s)	1467, 2130
BseBI	CCWGG	2 cut(s)	639, 1605
BseCI	ATCGAT	2 cut(s)	141, 2262
BseDI	CCNNGG	5 cut(s)	637, 1604, 1837, 2273, 2309
BseGI	GGATG	9 cut(s)	335, 436, 631, 1027, 1435, 1804, 1861, 2045, 2965
BseJI	GATNNNNATC	2 cut(s)	1467, 2130
BseLI	CCNNNNNNNGG	7 cut(s)	29, 674, 758, 1660, 1843, 2390, 2405
BseMI	GCAATG	3 cut(s)	621, 1805, 3063
BseMII	CTCAG	5 cut(s)	267, 1068, 1748, 2368, 2670
BseNI	ACTGG	6 cut(s)	173, 679, 1293, 2636, 2976, 3022
BseRI	GAGGAG	1 cut(s)	440
BseSI	GKGCMC	2 cut(s)	2158, 2578
BseXI	GCAGC	6 cut(s)	613, 1449, 1662, 2356, 2807, 3131
BseYI	CCCAGC	2 cut(s)	1828, 2158
BsgI	GTGCAG	2 cut(s)	2411, 2526
Bsh1236I	CGCG	1 cut(s)	54
Bsh1285I	CGRYCG	2 cut(s)	141, 595
BshNI	GGYRCC	1 cut(s)	683
BshTI	ACCGGT	1 cut(s)	1786
BshVI	ATCGAT	2 cut(s)	141, 2262
BsiEI	CGRYCG	2 cut(s)	141, 595
BsiHKAI	GWGCWC	1 cut(s)	282
BsiHKCI	CYCGRG	2 cut(s)	29, 1578
BsiSI	CCGG	5 cut(s)	311, 1787, 2037, 2572, 2765
BslFI	GGGAC	5 cut(s)	119, 2232, 2240, 2270, 3034
BslI	CCNNNNNNNGG	7 cut(s)	29, 674, 758, 1660, 1843, 2390, 2405
BsmAI	GTCTC	4 cut(s)	511, 738, 1031, 1948
BsmFI	GGGAC	5 cut(s)	119, 2232, 2240, 2270, 3034
BsmI	GAATGC	2 cut(s)	1084, 1297
Bso31I	GGTCTC	2 cut(s)	1031, 1948
BsoBI	CYCGRG	2 cut(s)	29, 1578
Bsp120I	GGGCCC	2 cut(s)	2154, 2574
Bsp1286I	GDGCHC	3 cut(s)	282, 2158, 2578
Bsp1407I	TGTACA	3 cut(s)	1126, 1339, 1747
Bsp1720I	GCTNAGC	1 cut(s)	2679
Bsp19I	CCATGG	1 cut(s)	1837
BspACI	CCGC	7 cut(s)	54, 69, 95, 146, 454, 491, 1661
BspCNI	CTCAG	5 cut(s)	268, 1069, 1747, 2367, 2671
BspDI	ATCGAT	2 cut(s)	141, 2262
BspFNI	CGCG	1 cut(s)	54
BspHI	TCATGA	1 cut(s)	580
BspMAI	CTGCAG	1 cut(s)	2830
BspPI	GGATC	5 cut(s)	649, 2231, 2300, 2756, 2862
BspQI	GCTCTTC	1 cut(s)	2982
BspT107I	GGYRCC	1 cut(s)	683
BspTNI	GGTCTC	2 cut(s)	1031, 1948
BsrDI	GCAATG	3 cut(s)	621, 1805, 3063
BsrFI	RCCGGY	1 cut(s)	1786
BsrGI	TGTACA	3 cut(s)	1126, 1339, 1747
BsrI	ACTGG	6 cut(s)	173, 679, 1293, 2636, 2976, 3022
BssAI	RCCGGY	1 cut(s)	1786
BssECI	CCNNGG	5 cut(s)	637, 1604, 1837, 2273, 2309
BssNI	GRCGYC	2 cut(s)	291, 1867
BssT1I	CCWWGG	3 cut(s)	1837, 2273, 2309
Bst2UI	CCWGG	2 cut(s)	639, 1605
Bst4CI	ACNGT	6 cut(s)	475, 596, 870, 2056, 2518, 2756
Bst6I	CTCTTC	5 cut(s)	3, 939, 2601, 2690, 2982
BstACI	GRCGYC	2 cut(s)	291, 1867
BstAPI	GCANNNNNTGC	1 cut(s)	1503
BstAUI	TGTACA	3 cut(s)	1126, 1339, 1747
BstBAI	YACGTR	1 cut(s)	2234
BstC8I	GCNNGC	4 cut(s)	82, 403, 1707, 2426
BstDEI	CTNAG	8 cut(s)	276, 1077, 1154, 1734, 2005, 2354, 2679, 2804
BstDSI	CCRYGG	1 cut(s)	1837
BstENI	CCTNNNNNAGG	1 cut(s)	2388
BstF5I	GGATG	9 cut(s)	335, 436, 631, 1027, 1435, 1804, 1861, 2045, 2965
BstFNI	CGCG	1 cut(s)	54
BstH2I	RGCGCY	2 cut(s)	210, 2147
BstHHI	GCGC	6 cut(s)	54, 209, 1741, 2123, 2146, 2526
BstMAI	GTCTC	4 cut(s)	511, 738, 1031, 1948
BstMCI	CGRYCG	2 cut(s)	141, 595
BstMWI	GCNNNNNNNGC	5 cut(s)	77, 407, 626, 1503, 2378
BstNI	CCWGG	2 cut(s)	639, 1605
BstNSI	RCATGY	1 cut(s)	1709
BstSCI	CCNGG	5 cut(s)	309, 637, 1603, 2571, 2764
BstSFI	CTRYAG	2 cut(s)	738, 2826
BstSLI	GKGCMC	2 cut(s)	2158, 2578
BstUI	CGCG	1 cut(s)	54
BstV1I	GCAGC	6 cut(s)	613, 1449, 1662, 2356, 2807, 3131
BstV2I	GAAGAC	8 cut(s)	303, 695, 817, 901, 985, 1091, 1198, 1304
BstX2I	RGATCY	2 cut(s)	641, 2305
BstXI	CCANNNNNNTGG	1 cut(s)	2548
BstYI	RGATCY	2 cut(s)	641, 2305
Bsu15I	ATCGAT	2 cut(s)	141, 2262
BsuTUI	ATCGAT	2 cut(s)	141, 2262
BtgI	CCRYGG	1 cut(s)	1837
BtsCI	GGATG	9 cut(s)	335, 436, 631, 1027, 1435, 1804, 1861, 2045, 2965
BtsIMutI	CAGTG	2 cut(s)	792, 1286
Cac8I	GCNNGC	4 cut(s)	82, 403, 1707, 2426
CaiI	CAGNNNCTG	2 cut(s)	131, 2425
CciI	TCATGA	1 cut(s)	580
CfoI	GCGC	6 cut(s)	54, 209, 1741, 2123, 2146, 2526
Cfr10I	RCCGGY	1 cut(s)	1786
Cfr13I	GGNCC	9 cut(s)	545, 1784, 2154, 2155, 2227, 2422, 2574, 2575, 3021
ClaI	ATCGAT	2 cut(s)	141, 2262
CpoI	CGGWCCG	1 cut(s)	1784
CseI	GACGC	3 cut(s)	299, 1343, 1856
Csp6I	GTAC	8 cut(s)	1127, 1340, 1518, 1567, 1748, 2639, 2901, 3131
CspAI	ACCGGT	1 cut(s)	1786
CspI	CGGWCCG	1 cut(s)	1784
CviQI	GTAC	8 cut(s)	1127, 1340, 1518, 1567, 1748, 2639, 2901, 3131
DdeI	CTNAG	8 cut(s)	276, 1077, 1154, 1734, 2005, 2354, 2679, 2804
DraIII	CACNNNGTG	1 cut(s)	3067
Eam1104I	CTCTTC	5 cut(s)	3, 939, 2601, 2690, 2982
EarI	CTCTTC	5 cut(s)	3, 939, 2601, 2690, 2982
EciI	GGCGGA	1 cut(s)	58
Ecl136II	GAGCTC	1 cut(s)	280
Eco130I	CCWWGG	3 cut(s)	1837, 2273, 2309
Eco147I	AGGCCT	4 cut(s)	970, 1378, 2104, 2214
Eco24I	GRGCYC	3 cut(s)	282, 2158, 2578
Eco31I	GGTCTC	2 cut(s)	1031, 1948
Eco47I	GGWCC	3 cut(s)	1784, 2227, 3021
Eco53kI	GAGCTC	1 cut(s)	280
Eco57I	CTGAAG	2 cut(s)	1959, 2625
Eco88I	CYCGRG	2 cut(s)	29, 1578
EcoICRI	GAGCTC	1 cut(s)	280
EcoNI	CCTNNNNNAGG	1 cut(s)	2388
EcoO109I	RGGNCCY	5 cut(s)	545, 2155, 2227, 2422, 2575
EcoRII	CCWGG	2 cut(s)	637, 1603
EcoT14I	CCWWGG	3 cut(s)	1837, 2273, 2309
EcoT22I	ATGCAT	1 cut(s)	2852
EcoT38I	GRGCYC	3 cut(s)	282, 2158, 2578
ErhI	CCWWGG	3 cut(s)	1837, 2273, 2309
FalI	AAGNNNNNCTT	2 cut(s)	1743, 1775
FaqI	GGGAC	5 cut(s)	119, 2232, 2240, 2270, 3034
FauI	CCCGC	2 cut(s)	47, 484
FauNDI	CATATG	1 cut(s)	1962
FbaI	TGATCA	1 cut(s)	1462
Fnu4HI	GCNGC	7 cut(s)	455, 627, 1438, 1651, 2370, 2796, 3120
FokI	GGATG	9 cut(s)	322, 443, 618, 1034, 1442, 1811, 1868, 2052, 2972
FriOI	GRGCYC	3 cut(s)	282, 2158, 2578
Fsp4HI	GCNGC	7 cut(s)	455, 627, 1438, 1651, 2370, 2796, 3120
GlaI	GCGC	6 cut(s)	53, 208, 1740, 2122, 2145, 2525
GluI	GCNGC	7 cut(s)	455, 627, 1438, 1651, 2370, 2796, 3120
GsaI	CCCAGC	2 cut(s)	1832, 2162
GsuI	CTGGAG	3 cut(s)	492, 1310, 2479
HaeII	RGCGCY	2 cut(s)	210, 2147
HapII	CCGG	5 cut(s)	311, 1787, 2037, 2572, 2765
HgaI	GACGC	3 cut(s)	299, 1343, 1856
HhaI	GCGC	6 cut(s)	54, 209, 1741, 2123, 2146, 2526
Hin1I	GRCGYC	2 cut(s)	291, 1867
Hin6I	GCGC	6 cut(s)	52, 207, 1739, 2121, 2144, 2524
HinP1I	GCGC	6 cut(s)	52, 207, 1739, 2121, 2144, 2524
HincII	GTYRAC	3 cut(s)	1012, 1172, 1225
HindII	GTYRAC	3 cut(s)	1012, 1172, 1225
HpaII	CCGG	5 cut(s)	311, 1787, 2037, 2572, 2765
HphI	GGTGA	7 cut(s)	325, 674, 1021, 1460, 1826, 2004, 2768
Hpy166II	GTNNAC	4 cut(s)	1012, 1172, 1225, 1333
Hpy8I	GTNNAC	4 cut(s)	1012, 1172, 1225, 1333
Hpy99I	CGWCG	1 cut(s)	293
HpyAV	CCTTC	3 cut(s)	722, 2969, 3051
HpyCH4III	ACNGT	6 cut(s)	475, 596, 870, 2056, 2518, 2756
HpyCH4IV	ACGT	4 cut(s)	1565, 2233, 2537, 3133
HpyF10VI	GCNNNNNNNGC	5 cut(s)	77, 407, 626, 1503, 2378
HpyF3I	CTNAG	8 cut(s)	276, 1077, 1154, 1734, 2005, 2354, 2679, 2804
HpySE526I	ACGT	4 cut(s)	1565, 2233, 2537, 3133
Hsp92I	GRCGYC	2 cut(s)	291, 1867
HspAI	GCGC	6 cut(s)	52, 207, 1739, 2121, 2144, 2524
Ksp22I	TGATCA	1 cut(s)	1462
LguI	GCTCTTC	1 cut(s)	2982
LmnI	GCTCC	3 cut(s)	148, 776, 1647
Lsp1109I	GCAGC	6 cut(s)	613, 1449, 1662, 2356, 2807, 3131
LweI	GCATC	7 cut(s)	133, 1883, 1913, 2030, 2368, 2548, 2807
MaeII	ACGT	4 cut(s)	1565, 2233, 2537, 3133
MaeIII	GTNAC	8 cut(s)	88, 587, 1352, 1533, 2386, 2595, 2620, 2750
MfeI	CAATTG	2 cut(s)	180, 1033
MflI	RGATCY	2 cut(s)	641, 2305
MhlI	GDGCHC	3 cut(s)	282, 2158, 2578
MlyI	GAGTC	8 cut(s)	173, 230, 267, 1177, 1357, 1570, 1683, 2606
MmeI	TCCRAC	3 cut(s)	520, 1470, 2554
Mph1103I	ATGCAT	1 cut(s)	2852
MroXI	GAANNNNTTC	2 cut(s)	732, 3036
MseI	TTAA	7 cut(s)	372, 1761, 1875, 2030, 2868, 2910, 2997
MslI	CAYNNNNRTG	2 cut(s)	2845, 3164
MspA1I	CMGCKG	1 cut(s)	3122
MspI	CCGG	5 cut(s)	311, 1787, 2037, 2572, 2765
MspR9I	CCNGG	5 cut(s)	311, 639, 1605, 2573, 2766
MunI	CAATTG	2 cut(s)	180, 1033
Mva1269I	GAATGC	2 cut(s)	1084, 1297
MvaI	CCWGG	2 cut(s)	639, 1605
MvnI	CGCG	1 cut(s)	54
MwoI	GCNNNNNNNGC	5 cut(s)	77, 407, 626, 1503, 2378
NciI	CCSGG	3 cut(s)	311, 2573, 2766
NcoI	CCATGG	1 cut(s)	1837
NdeI	CATATG	1 cut(s)	1962
NmeAIII	GCCGAG	1 cut(s)	912
NmuCI	GTSAC	3 cut(s)	587, 2595, 2620
NsiI	ATGCAT	1 cut(s)	2852
NspI	RCATGY	1 cut(s)	1709
PaeI	GCATGC	1 cut(s)	1709
PaeR7I	CTCGAG	1 cut(s)	1578
PagI	TCATGA	1 cut(s)	580
PceI	AGGCCT	4 cut(s)	970, 1378, 2104, 2214
PciSI	GCTCTTC	1 cut(s)	2982
PcsI	WCGNNNNNNNCGW	1 cut(s)	297
PctI	GAATGC	2 cut(s)	1084, 1297
PdmI	GAANNNNTTC	2 cut(s)	732, 3036
PflMI	CCANNNNNTGG	1 cut(s)	674
PinAI	ACCGGT	1 cut(s)	1786
PkrI	GCNGC	7 cut(s)	456, 628, 1439, 1652, 2371, 2797, 3121
Ple19I	CGATCG	1 cut(s)	141
PleI	GAGTC	8 cut(s)	172, 230, 266, 1176, 1357, 1570, 1682, 2606
PpsI	GAGTC	8 cut(s)	172, 230, 266, 1176, 1357, 1570, 1682, 2606
Ppu21I	YACGTR	1 cut(s)	2234
PpuMI	RGGWCCY	1 cut(s)	2227
PshBI	ATTAAT	1 cut(s)	2997
Psp124BI	GAGCTC	1 cut(s)	282
Psp5II	RGGWCCY	1 cut(s)	2227
Psp6I	CCWGG	2 cut(s)	637, 1603
PspFI	CCCAGC	2 cut(s)	1828, 2158
PspGI	CCWGG	2 cut(s)	637, 1603
PspOMI	GGGCCC	2 cut(s)	2154, 2574
PspPI	GGNCC	9 cut(s)	545, 1784, 2154, 2155, 2227, 2422, 2574, 2575, 3021
PspPPI	RGGWCCY	1 cut(s)	2227
PspXI	VCTCGAGB	1 cut(s)	1578
PstI	CTGCAG	1 cut(s)	2830
PstNI	CAGNNNCTG	2 cut(s)	131, 2425
PsuI	RGATCY	2 cut(s)	641, 2305
PvuI	CGATCG	1 cut(s)	141
PvuII	CAGCTG	1 cut(s)	3122
RsaI	GTAC	8 cut(s)	1128, 1341, 1519, 1568, 1749, 2640, 2902, 3132
RsaNI	GTAC	8 cut(s)	1127, 1340, 1518, 1567, 1748, 2639, 2901, 3131
RseI	CAYNNNNRTG	2 cut(s)	2845, 3164
Rsr2I	CGGWCCG	1 cut(s)	1784
RsrII	CGGWCCG	1 cut(s)	1784
SacI	GAGCTC	1 cut(s)	282
SapI	GCTCTTC	1 cut(s)	2982
SaqAI	TTAA	7 cut(s)	372, 1761, 1875, 2030, 2868, 2910, 2997
SatI	GCNGC	7 cut(s)	455, 627, 1438, 1651, 2370, 2796, 3120
Sau96I	GGNCC	9 cut(s)	545, 1784, 2154, 2155, 2227, 2422, 2574, 2575, 3021
ScaI	AGTACT	1 cut(s)	1519
SchI	GAGTC	8 cut(s)	173, 230, 267, 1177, 1357, 1570, 1683, 2606
ScrFI	CCNGG	5 cut(s)	311, 639, 1605, 2573, 2766
SduI	GDGCHC	3 cut(s)	282, 2158, 2578
SfaNI	GCATC	7 cut(s)	133, 1883, 1913, 2030, 2368, 2548, 2807
SfcI	CTRYAG	2 cut(s)	738, 2826
Sfr274I	CTCGAG	1 cut(s)	1578
SinI	GGWCC	3 cut(s)	1784, 2227, 3021
SlaI	CTCGAG	1 cut(s)	1578
SmiMI	CAYNNNNRTG	2 cut(s)	2845, 3164
SmlI	CTYRAG	8 cut(s)	196, 352, 1113, 1326, 1521, 1578, 1685, 2091
SmoI	CTYRAG	8 cut(s)	196, 352, 1113, 1326, 1521, 1578, 1685, 2091
SphI	GCATGC	1 cut(s)	1709
SseBI	AGGCCT	4 cut(s)	970, 1378, 2104, 2214
SsiI	CCGC	7 cut(s)	54, 69, 95, 146, 454, 491, 1661
SspI	AATATT	1 cut(s)	1625
SstI	GAGCTC	1 cut(s)	282
StuI	AGGCCT	4 cut(s)	970, 1378, 2104, 2214
StyD4I	CCNGG	5 cut(s)	309, 637, 1603, 2571, 2764
StyI	CCWWGG	3 cut(s)	1837, 2273, 2309
TaaI	ACNGT	6 cut(s)	475, 596, 870, 2056, 2518, 2756
TaiI	ACGT	4 cut(s)	1568, 2236, 2540, 3136
TaqII	GACCGA	1 cut(s)	3038
TatI	WGTACW	4 cut(s)	1126, 1339, 1517, 1747
TauI	GCSGC	1 cut(s)	457
Tru1I	TTAA	7 cut(s)	372, 1761, 1875, 2030, 2868, 2910, 2997
Tru9I	TTAA	7 cut(s)	372, 1761, 1875, 2030, 2868, 2910, 2997
TscAI	CASTG	2 cut(s)	799, 1293
TseFI	GTSAC	3 cut(s)	587, 2595, 2620
TseI	GCWGC	6 cut(s)	626, 1437, 1650, 2369, 2795, 3119
Tsp45I	GTSAC	3 cut(s)	587, 2595, 2620
TspGWI	ACGGA	2 cut(s)	1319, 2234
TspRI	CASTG	2 cut(s)	799, 1293
Van91I	CCANNNNNTGG	1 cut(s)	674
VpaK11BI	GGWCC	3 cut(s)	1784, 2227, 3021
VspI	ATTAAT	1 cut(s)	2997
XagI	CCTNNNNNAGG	1 cut(s)	2388
XapI	RAATTY	2 cut(s)	1120, 2219
XceI	RCATGY	1 cut(s)	1709
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1897
XhoI	CTCGAG	1 cut(s)	1578
XmnI	GAANNNNTTC	2 cut(s)	732, 3036
ZrmI	AGTACT	1 cut(s)	1519
Zsp2I	ATGCAT	1 cut(s)	2852

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.