Rmu_sc0003510.1_g000012

WD40 repeats

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003510.1
OG0002231
Physical Location & Seq
Forward (+)
42614 .. 43182
569 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003510.1_g000012.1.cds

Sequence Viewer

Length: 342 bp
atgacaactacatcacaagatcaagttttagctctttgttatggtgacgatccgggaattggagaaaagggtacatctcttaaatccaagtctagtaagaaaaatacagaggatgaacaagaactggaaggcagagatgaagagctgattaatacgcagagagaaaaaactgggaccgagtatgaagtttttccttccaagcaagtagcaatgcaccgagtgagatggaacatgaacaagggtagtgagagatggttatgctatggaggggcagctggaatagtacgttgtcaagagattgttttgtctgacaatgatatgaaatgggcaaggaagaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AT_hook

Protein Analysis

113

Amino Acids

12.85

Weight (kDa)

5.89

Isoelectric Point (pI)

40.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 44
AdeI CACNNNGTG 1 cut(s) 220
AfaI GTAC 2 cut(s) 73, 285
AfiI CCNNNNNNNGG 1 cut(s) 59
AluBI AGCT 3 cut(s) 32, 145, 275
AluI AGCT 3 cut(s) 32, 145, 275
AlwI GGATC 1 cut(s) 44
ApeKI GCWGC 1 cut(s) 272
AseI ATTAAT 1 cut(s) 150
Asp700I GAANNNNTTC 1 cut(s) 189
AspS9I GGNCC 1 cut(s) 174
AsuC2I CCSGG 1 cut(s) 54
AsuHPI GGTGA 1 cut(s) 56
AvaII GGWCC 1 cut(s) 174
BbvI GCAGC 1 cut(s) 284
BccI CCATC 2 cut(s) 219, 246
BcnI CCSGG 1 cut(s) 54
BfaI CTAG 1 cut(s) 93
BisI GCNGC 1 cut(s) 273
BlsI GCNGC 1 cut(s) 274
Bme1390I CCNGG 1 cut(s) 54
Bme18I GGWCC 1 cut(s) 174
BmgT120I GGNCC 1 cut(s) 174
BmiI GGNNCC 1 cut(s) 175
BmrFI CCNGG 1 cut(s) 54
BmrI ACTGGG 1 cut(s) 180
BmuI ACTGGG 1 cut(s) 180
BpuMI CCSGG 1 cut(s) 54
Bsc4I CCNNNNNNNGG 1 cut(s) 59
Bse1I ACTGG 2 cut(s) 129, 175
Bse3DI GCAATG 1 cut(s) 216
BseGI GGATG 1 cut(s) 118
BseLI CCNNNNNNNGG 1 cut(s) 59
BseMI GCAATG 1 cut(s) 216
BseNI ACTGG 2 cut(s) 129, 175
BseXI GCAGC 1 cut(s) 284
BsiSI CCGG 1 cut(s) 53
BslFI GGGAC 1 cut(s) 187
BslI CCNNNNNNNGG 1 cut(s) 59
BsmFI GGGAC 1 cut(s) 187
Bsp143I GATC 2 cut(s) 19, 49
BspLI GGNNCC 1 cut(s) 175
BspPI GGATC 1 cut(s) 44
BspQI GCTCTTC 1 cut(s) 135
BsrDI GCAATG 1 cut(s) 216
BsrI ACTGG 2 cut(s) 129, 175
BssMI GATC 2 cut(s) 19, 49
Bst6I CTCTTC 1 cut(s) 135
BstF5I GGATG 1 cut(s) 118
BstKTI GATC 2 cut(s) 22, 52
BstMBI GATC 2 cut(s) 19, 49
BstSCI CCNGG 1 cut(s) 52
BstV1I GCAGC 1 cut(s) 284
BtsCI GGATG 1 cut(s) 118
Cfr13I GGNCC 1 cut(s) 174
Csp6I GTAC 2 cut(s) 72, 284
CviAII CATG 1 cut(s) 232
CviJI RGCY 3 cut(s) 32, 145, 275
CviKI_1 RGCY 3 cut(s) 32, 145, 275
CviQI GTAC 2 cut(s) 72, 284
DpnI GATC 2 cut(s) 21, 51
DpnII GATC 2 cut(s) 19, 49
DraIII CACNNNGTG 1 cut(s) 220
Eam1104I CTCTTC 1 cut(s) 135
EarI CTCTTC 1 cut(s) 135
Eco47I GGWCC 1 cut(s) 174
FaeI CATG 1 cut(s) 235
FaiI YATR 6 cut(s) 42, 183, 233, 259, 264, 320
FaqI GGGAC 1 cut(s) 187
FatI CATG 1 cut(s) 231
Fnu4HI GCNGC 1 cut(s) 273
FokI GGATG 1 cut(s) 125
Fsp4HI GCNGC 1 cut(s) 273
FspBI CTAG 1 cut(s) 93
GluI GCNGC 1 cut(s) 273
HapII CCGG 1 cut(s) 53
Hin1II CATG 1 cut(s) 235
HpaII CCGG 1 cut(s) 53
HphI GGTGA 1 cut(s) 56
Hpy188I TCNGA 1 cut(s) 310
Hpy188III TCNNGA 1 cut(s) 293
HpyAV CCTTC 2 cut(s) 122, 204
HpyCH4IV ACGT 1 cut(s) 286
HpyCH4V TGCA 1 cut(s) 214
HpySE526I ACGT 1 cut(s) 286
Hsp92II CATG 1 cut(s) 235
Kzo9I GATC 2 cut(s) 19, 49
LguI GCTCTTC 1 cut(s) 135
LpnPI CCDG 4 cut(s) 66, 110, 156, 261
Lsp1109I GCAGC 1 cut(s) 284
MaeI CTAG 1 cut(s) 93
MaeII ACGT 1 cut(s) 286
MaeIII GTNAC 1 cut(s) 44
MalI GATC 2 cut(s) 21, 51
MboI GATC 2 cut(s) 19, 49
MboII GAAGA 1 cut(s) 152
MluCI AATT 1 cut(s) 57
MnlI CCTC 2 cut(s) 103, 260
MroXI GAANNNNTTC 1 cut(s) 189
MseI TTAA 2 cut(s) 81, 150
MspA1I CMGCKG 1 cut(s) 275
MspI CCGG 1 cut(s) 53
MspR9I CCNGG 1 cut(s) 54
NciI CCSGG 1 cut(s) 54
NdeII GATC 2 cut(s) 19, 49
NlaIII CATG 1 cut(s) 235
NlaIV GGNNCC 1 cut(s) 175
NmuCI GTSAC 1 cut(s) 44
PciSI GCTCTTC 1 cut(s) 135
PdmI GAANNNNTTC 1 cut(s) 189
PfoI TCCNGGA 1 cut(s) 52
PkrI GCNGC 1 cut(s) 274
PshBI ATTAAT 1 cut(s) 150
PspN4I GGNNCC 1 cut(s) 175
PspPI GGNCC 1 cut(s) 174
PvuII CAGCTG 1 cut(s) 275
RsaI GTAC 2 cut(s) 73, 285
RsaNI GTAC 2 cut(s) 72, 284
SapI GCTCTTC 1 cut(s) 135
SaqAI TTAA 2 cut(s) 81, 150
SatI GCNGC 1 cut(s) 273
Sau3AI GATC 2 cut(s) 19, 49
Sau96I GGNCC 1 cut(s) 174
ScrFI CCNGG 1 cut(s) 54
SetI ASST 4 cut(s) 34, 147, 277, 289
SinI GGWCC 1 cut(s) 174
Sse9I AATT 1 cut(s) 57
SspMI CTAG 1 cut(s) 93
StyD4I CCNGG 1 cut(s) 52
TaiI ACGT 1 cut(s) 289
TaqII GACCGA 1 cut(s) 191
TasI AATT 1 cut(s) 57
Tru1I TTAA 2 cut(s) 81, 150
Tru9I TTAA 2 cut(s) 81, 150
TseFI GTSAC 1 cut(s) 44
TseI GCWGC 1 cut(s) 272
Tsp45I GTSAC 1 cut(s) 44
TspDTI ATGAA 5 cut(s) 129, 153, 198, 248, 335
VpaK11BI GGWCC 1 cut(s) 174
VspI ATTAAT 1 cut(s) 150
XmnI GAANNNNTTC 1 cut(s) 189
XspI CTAG 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.