Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001478

Physical Location & Seq

Genomic Coordinates Forward (+)

8417495 .. 8418566

Gene Structure 1072 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G23810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGCTGGAGGAAGTAAATCACCGGCGTCATCTTTGGAAGATGGAAAGGCATACGTCAATGCTGTGAAGGTCGCATTGGAGGAAGCGGAACCTGCAAAATATCAAGAGTTTCTAAGACTCTTTCATGAGGTGATAGCGCGAAGGATGGGTATGGCTACTTTCAGTGCACGCATGCAGGACCTCTTGAAAGATCACCCGAGTCTGTGTCTTGGTTTAAATGTCATGCTTGCACCTGAGTATCAGAGAGCCATCCCTCCCGAGGCTAGCGAAGAGTTTCATAAGGTGGTTGGAAGAAGCGTACCACGTCCGGAGCCTACCATAGATGATGCGACTTCATACCTCATTGCTGTGAAGGAAGCATTTCATGATGAACCTGCAAAATATGAGGAAATGCTTAAGCTCTTGAATGATTTTAAAGCTCGCAGAGTCAATGCCGCTAGTGTCATTGCTAGGGTGGAGGAACTCATGAAAGATCACTCGAATCTGCTTTTTGGTTTCTGTGTCTTCCTTTCAGCTACAACGAGTTTTACCACGAAGCTTAAGGCAAAGTTTCAGGGCGATGGTAGTCAAGTAGTTGACTCAGTTCTTCAGATAATGAGAATGTACGGTGAGGGAAACAAGTCCAAACATGATGCGTATCAGGAGATCGTTGCACTTGTTCAGGGTCATGACGATTTAGTCATGGAGCTTTCACAAATTTTCACTGATCCATCTACTAGAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0002119 GO:0002164 GO:0003006 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0007275 GO:0007423 GO:0007548 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009653 GO:0009791 GO:0009887 GO:0009889 GO:0009941 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0030539 GO:0031323 GO:0031326 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0035112 GO:0040011 GO:0040025 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045165 GO:0046661 GO:0048513 GO:0048569 GO:0048608 GO:0048731 GO:0048806 GO:0048808 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090596 GO:0090597 GO:0090598 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

241

Amino Acids

26.86

Weight (kDa)

5.69

Isoelectric Point (pI)

43.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAH	PF02671	32 - 76	7.3e-09	Paired amphipathic helix repeat
PAH	PF02671	126 - 170	2.5e-12	Paired amphipathic helix repeat
PAH	PF02671	190 - 232	1e-06	Paired amphipathic helix repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23810 AT1G24210 AT1G24220 AT1G24220 AT1G24230 AT1G24250 AT1G27240 AT1G27260 AT1G27270 AT1G27280
fragaria_vesca	FvH4_3g01921 FvH4_3g01930 FvH4_5g11770 FvH4_5g22630
malus_domestica	MD08G1247800.v1.1
pyrus_communis	pycom08g21470 pycom15g39040
rosa_chinensis	RchiOBHm_Chr5g0002831 RchiOBHm_Chr5g0002841
rosa_laevigata	RLG00000003026 RLG00000003029 RLG00000031063 RLG00000031064
rosa_multiflora	Rmu_co8115592.1_g000001 Rmu_co8158784.1_g000001 Rmu_sc0012670.1_g000008 Rmu_sc0012670.1_g000009 Rmu_sc0013603.1_g000011 Rmu_sc0013603.1_g000012
rosa_roxburghii	Rroxscaffold_1G00073010 Rroxscaffold_1G00073020 Rroxscaffold_3G00248150
rosa_rugosa	Rorug04G0400000 Rorug04G0400100
rosa_samantha	Rh5AG022900 Rh5BG025500 Rh5BG025600 Rh5CG025400 Rh5CG025500 Rh5DG024000 Rh5DG024100 Rh7AG255700 Rh7AG256500 Rh7BG250100 Rh7CG272100 Rh7CG272900 Rh7CG273000 Rh7DG262900
rosa_wichuraiana	Rw5G002120 Rw5G002140 Rw7G021870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	677
Acc36I	ACCTGC	2 cut(s)	100, 382
AccII	CGCG	1 cut(s)	139
AccIII	TCCGGA	1 cut(s)	307
AciI	CCGC	2 cut(s)	86, 435
AclWI	GGATC	1 cut(s)	701
AcsI	RAATTY	1 cut(s)	696
AcuI	CTGAAG	1 cut(s)	572
AcyI	GRCGYC	1 cut(s)	26
AfaI	GTAC	2 cut(s)	300, 605
AfiI	CCNNNNNNNGG	1 cut(s)	259
AflII	CTTAAG	2 cut(s)	395, 539
AgsI	TTSAA	2 cut(s)	187, 406
AjiI	CACGTC	1 cut(s)	305
AjuI	GAANNNNNNNTTGG	2 cut(s)	59, 91
AluBI	AGCT	5 cut(s)	400, 419, 515, 538, 688
AluI	AGCT	5 cut(s)	400, 419, 515, 538, 688
Alw21I	GWGCWC	1 cut(s)	169
Alw44I	GTGCAC	1 cut(s)	165
AlwI	GGATC	1 cut(s)	701
Ama87I	CYCGRG	2 cut(s)	196, 257
Aor13HI	TCCGGA	1 cut(s)	307
ApaLI	GTGCAC	1 cut(s)	165
ApoI	RAATTY	1 cut(s)	696
Asp700I	GAANNNNTTC	2 cut(s)	273, 360
AspLEI	GCGC	1 cut(s)	139
AspS9I	GGNCC	1 cut(s)	178
AsuHPI	GGTGA	4 cut(s)	12, 142, 185, 620
AsuNHI	GCTAGC	1 cut(s)	263
AvaI	CYCGRG	2 cut(s)	196, 257
AvaII	GGWCC	1 cut(s)	178
BaeGI	GKGCMC	1 cut(s)	169
BaeI	ACNNNNGTAYC	2 cut(s)	221, 254
BbsI	GAAGAC	1 cut(s)	496
Bbv12I	GWGCWC	1 cut(s)	169
BccI	CCATC	5 cut(s)	35, 139, 257, 554, 718
BfaI	CTAG	5 cut(s)	264, 438, 450, 717, 724
BfrI	CTTAAG	2 cut(s)	395, 539
BfuAI	ACCTGC	2 cut(s)	100, 382
BisI	GCNGC	1 cut(s)	435
BlsI	GCNGC	1 cut(s)	436
Bme18I	GGWCC	1 cut(s)	178
BmeT110I	CYCGRG	2 cut(s)	196, 257
BmgBI	CACGTC	1 cut(s)	305
BmgT120I	GGNCC	1 cut(s)	178
BmiI	GGNNCC	2 cut(s)	90, 312
BmsI	GCATC	2 cut(s)	316, 622
BmtI	GCTAGC	1 cut(s)	267
BpiI	GAAGAC	1 cut(s)	496
BpmI	CTGGAG	1 cut(s)	27
BsaBI	GATNNNNATC	1 cut(s)	636
BsaHI	GRCGYC	1 cut(s)	26
BsaJI	CCNNGG	1 cut(s)	258
BsaWI	WCCGGW	1 cut(s)	307
Bsc4I	CCNNNNNNNGG	1 cut(s)	259
Bse118I	RCCGGY	1 cut(s)	22
Bse3DI	GCAATG	2 cut(s)	342, 444
Bse8I	GATNNNNATC	1 cut(s)	636
BseAI	TCCGGA	1 cut(s)	307
BseDI	CCNNGG	1 cut(s)	258
BseGI	GGATG	2 cut(s)	150, 249
BseJI	GATNNNNATC	1 cut(s)	636
BseLI	CCNNNNNNNGG	1 cut(s)	259
BseMI	GCAATG	2 cut(s)	342, 444
BseMII	CTCAG	2 cut(s)	225, 594
BseSI	GKGCMC	1 cut(s)	169
Bsh1236I	CGCG	1 cut(s)	139
BsiHKAI	GWGCWC	1 cut(s)	169
BsiHKCI	CYCGRG	2 cut(s)	196, 257
BsiSI	CCGG	2 cut(s)	23, 308
BslI	CCNNNNNNNGG	1 cut(s)	259
BsoBI	CYCGRG	2 cut(s)	196, 257
Bsp1286I	GDGCHC	1 cut(s)	169
Bsp13I	TCCGGA	1 cut(s)	307
Bsp143I	GATC	4 cut(s)	190, 472, 645, 706
BspACI	CCGC	2 cut(s)	86, 435
BspCNI	CTCAG	2 cut(s)	226, 593
BspEI	TCCGGA	1 cut(s)	307
BspFNI	CGCG	1 cut(s)	139
BspHI	TCATGA	4 cut(s)	124, 364, 465, 667
BspLI	GGNNCC	2 cut(s)	90, 312
BspMI	ACCTGC	2 cut(s)	100, 382
BspOI	GCTAGC	1 cut(s)	267
BspPI	GGATC	1 cut(s)	701
BspTI	CTTAAG	2 cut(s)	395, 539
BsrDI	GCAATG	2 cut(s)	342, 444
BsrFI	RCCGGY	1 cut(s)	22
BssAI	RCCGGY	1 cut(s)	22
BssECI	CCNNGG	1 cut(s)	258
BssMI	GATC	4 cut(s)	190, 472, 645, 706
BssNI	GRCGYC	1 cut(s)	26
Bst4CI	ACNGT	1 cut(s)	608
Bst6I	CTCTTC	1 cut(s)	264
BstACI	GRCGYC	1 cut(s)	26
BstAFI	CTTAAG	2 cut(s)	395, 539
BstC8I	GCNNGC	5 cut(s)	169, 173, 228, 265, 421
BstDEI	CTNAG	3 cut(s)	113, 234, 580
BstF5I	GGATG	2 cut(s)	150, 249
BstFNI	CGCG	1 cut(s)	139
BstHHI	GCGC	1 cut(s)	139
BstKTI	GATC	4 cut(s)	193, 475, 648, 709
BstMBI	GATC	4 cut(s)	190, 472, 645, 706
BstMWI	GCNNNNNNNGC	1 cut(s)	92
BstNSI	RCATGY	1 cut(s)	175
BstSLI	GKGCMC	1 cut(s)	169
BstUI	CGCG	1 cut(s)	139
BstV2I	GAAGAC	1 cut(s)	496
BtgZI	GCGATG	1 cut(s)	573
BtrI	CACGTC	1 cut(s)	305
BtsCI	GGATG	2 cut(s)	150, 249
BtsIMutI	CAGTG	2 cut(s)	169, 702
BveI	ACCTGC	2 cut(s)	100, 382
Cac8I	GCNNGC	5 cut(s)	169, 173, 228, 265, 421
CciI	TCATGA	4 cut(s)	124, 364, 465, 667
CfoI	GCGC	1 cut(s)	139
Cfr10I	RCCGGY	1 cut(s)	22
Cfr13I	GGNCC	1 cut(s)	178
CseI	GACGC	1 cut(s)	15
Csp6I	GTAC	2 cut(s)	299, 604
CviAII	CATG	8 cut(s)	125, 172, 223, 365, 466, 629, 668, 682
CviQI	GTAC	2 cut(s)	299, 604
DdeI	CTNAG	3 cut(s)	113, 234, 580
DpnI	GATC	4 cut(s)	192, 474, 647, 708
DpnII	GATC	4 cut(s)	190, 472, 645, 706
DraI	TTTAAA	2 cut(s)	216, 415
DrdI	GACNNNNNNGTC	1 cut(s)	677
DseDI	GACNNNNNNGTC	1 cut(s)	677
Eam1104I	CTCTTC	1 cut(s)	264
EarI	CTCTTC	1 cut(s)	264
Eco47I	GGWCC	1 cut(s)	178
Eco57I	CTGAAG	1 cut(s)	572
Eco88I	CYCGRG	2 cut(s)	196, 257
EcoO109I	RGGNCCY	1 cut(s)	178
FaeI	CATG	8 cut(s)	128, 175, 226, 368, 469, 632, 671, 685
FatI	CATG	8 cut(s)	124, 171, 222, 364, 465, 628, 667, 681
Fnu4HI	GCNGC	1 cut(s)	435
FokI	GGATG	2 cut(s)	157, 236
Fsp4HI	GCNGC	1 cut(s)	435
FspBI	CTAG	5 cut(s)	264, 438, 450, 717, 724
GlaI	GCGC	1 cut(s)	138
GluI	GCNGC	1 cut(s)	435
GsuI	CTGGAG	1 cut(s)	27
HapII	CCGG	2 cut(s)	23, 308
HgaI	GACGC	1 cut(s)	15
HhaI	GCGC	1 cut(s)	139
Hin1I	GRCGYC	1 cut(s)	26
Hin1II	CATG	8 cut(s)	128, 175, 226, 368, 469, 632, 671, 685
Hin6I	GCGC	1 cut(s)	137
HinP1I	GCGC	1 cut(s)	137
HincII	GTYRAC	1 cut(s)	577
HindII	GTYRAC	1 cut(s)	577
HindIII	AAGCTT	1 cut(s)	536
HinfI	GANTC	6 cut(s)	117, 199, 426, 481, 578, 720
HpaII	CCGG	2 cut(s)	23, 308
HphI	GGTGA	4 cut(s)	12, 142, 185, 620
Hpy166II	GTNNAC	2 cut(s)	167, 577
Hpy188I	TCNGA	2 cut(s)	243, 591
Hpy8I	GTNNAC	2 cut(s)	167, 577
HpyAV	CCTTC	3 cut(s)	61, 135, 346
HpyCH4III	ACNGT	1 cut(s)	608
HpyCH4IV	ACGT	2 cut(s)	54, 304
HpyCH4V	TGCA	6 cut(s)	95, 167, 175, 230, 377, 653
HpyF10VI	GCNNNNNNNGC	1 cut(s)	92
HpyF3I	CTNAG	3 cut(s)	113, 234, 580
HpySE526I	ACGT	2 cut(s)	54, 304
Hsp92I	GRCGYC	1 cut(s)	26
Hsp92II	CATG	8 cut(s)	128, 175, 226, 368, 469, 632, 671, 685
HspAI	GCGC	1 cut(s)	137
Kpn2I	TCCGGA	1 cut(s)	307
Kzo9I	GATC	4 cut(s)	190, 472, 645, 706
LmnI	GCTCC	2 cut(s)	310, 685
LpnPI	CCDG	9 cut(s)	36, 105, 161, 246, 321, 387, 539, 626, 647
LweI	GCATC	2 cut(s)	316, 622
MaeI	CTAG	5 cut(s)	264, 438, 450, 717, 724
MaeII	ACGT	2 cut(s)	54, 304
MalI	GATC	4 cut(s)	192, 474, 647, 708
MboI	GATC	4 cut(s)	190, 472, 645, 706
MboII	GAAGA	5 cut(s)	50, 281, 303, 496, 578
MhlI	GDGCHC	1 cut(s)	169
MluCI	AATT	1 cut(s)	696
MlyI	GAGTC	4 cut(s)	111, 208, 435, 572
MmeI	TCCRAC	1 cut(s)	268
MnlI	CCTC	9 cut(s)	73, 121, 191, 253, 264, 350, 379, 451, 604
MroI	TCCGGA	1 cut(s)	307
MroXI	GAANNNNTTC	2 cut(s)	273, 360
MseI	TTAA	4 cut(s)	215, 396, 414, 540
MslI	CAYNNNNRTG	1 cut(s)	347
MspCI	CTTAAG	2 cut(s)	395, 539
MspI	CCGG	2 cut(s)	23, 308
MvnI	CGCG	1 cut(s)	139
MwoI	GCNNNNNNNGC	1 cut(s)	92
NdeII	GATC	4 cut(s)	190, 472, 645, 706
NheI	GCTAGC	1 cut(s)	263
NlaIII	CATG	8 cut(s)	128, 175, 226, 368, 469, 632, 671, 685
NlaIV	GGNNCC	2 cut(s)	90, 312
NspI	RCATGY	1 cut(s)	175
PaeI	GCATGC	1 cut(s)	175
PagI	TCATGA	4 cut(s)	124, 364, 465, 667
PdmI	GAANNNNTTC	2 cut(s)	273, 360
PfeI	GAWTC	1 cut(s)	481
PkrI	GCNGC	1 cut(s)	436
PleI	GAGTC	4 cut(s)	111, 207, 434, 572
PpsI	GAGTC	4 cut(s)	111, 207, 434, 572
PpuMI	RGGWCCY	1 cut(s)	178
Psp5II	RGGWCCY	1 cut(s)	178
PspN4I	GGNNCC	2 cut(s)	90, 312
PspPI	GGNCC	1 cut(s)	178
PspPPI	RGGWCCY	1 cut(s)	178
RsaI	GTAC	2 cut(s)	300, 605
RsaNI	GTAC	2 cut(s)	299, 604
RseI	CAYNNNNRTG	1 cut(s)	347
SaqAI	TTAA	4 cut(s)	215, 396, 414, 540
SatI	GCNGC	1 cut(s)	435
Sau3AI	GATC	4 cut(s)	190, 472, 645, 706
Sau96I	GGNCC	1 cut(s)	178
SchI	GAGTC	4 cut(s)	111, 208, 435, 572
SduI	GDGCHC	1 cut(s)	169
SfaNI	GCATC	2 cut(s)	316, 622
SgrAI	CRCCGGYG	1 cut(s)	22
SinI	GGWCC	1 cut(s)	178
SmiMI	CAYNNNNRTG	1 cut(s)	347
SmlI	CTYRAG	2 cut(s)	395, 539
SmoI	CTYRAG	2 cut(s)	395, 539
SphI	GCATGC	1 cut(s)	175
Sse9I	AATT	1 cut(s)	696
SsiI	CCGC	2 cut(s)	86, 435
SspMI	CTAG	5 cut(s)	264, 438, 450, 717, 724
TaaI	ACNGT	1 cut(s)	608
TaiI	ACGT	2 cut(s)	57, 307
TaqI	TCGA	1 cut(s)	479
TasI	AATT	1 cut(s)	696
TauI	GCSGC	1 cut(s)	437
TfiI	GAWTC	1 cut(s)	481
Tru1I	TTAA	4 cut(s)	215, 396, 414, 540
Tru9I	TTAA	4 cut(s)	215, 396, 414, 540
TscAI	CASTG	2 cut(s)	169, 709
TspDTI	ATGAA	6 cut(s)	113, 266, 324, 353, 384, 482
TspRI	CASTG	2 cut(s)	169, 709
Vha464I	CTTAAG	2 cut(s)	395, 539
VneI	GTGCAC	1 cut(s)	165
VpaK11BI	GGWCC	1 cut(s)	178
XapI	RAATTY	1 cut(s)	696
XceI	RCATGY	1 cut(s)	175
XmnI	GAANNNNTTC	2 cut(s)	273, 360
XspI	CTAG	5 cut(s)	264, 438, 450, 717, 724

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.