Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013603.1

Orthogroup ID

OG0001478

Physical Location & Seq

Genomic Coordinates Reverse (-)

64649 .. 65866

Gene Structure 1218 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013603.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

atgcttcgatcagacactgttccgtttcgacacaaagaagagtactccagtgaaccccagatggtaaattatgagatgttgaggttaggaggagagattttgaggaaggacaactgcatcgaatatctaaagaccttgcggaacttcaactactatgtctaccaccacttcgtcaatcttatgaaagacttcaagccaaaaggtgacgactgtattgaaactttgaagcagaaggtgcaggacttatttgaagggtgtccggatttgttattagggttcaatgacttcttgcccatgagacataaaattaacgtcccaatctcaataaaagtccagaccgccaggaaactcccaatagttctttatcgaaagagaaagcacgacgatgatactagtgatgttgttgttgtatctaatgactctaagcttcaaaaggtgatcggttttgtgaacaaggttagagatagatttcgcaacgatagtgaggaaggtgatgatgtttttcagtcctttttagatattttcttgaattatcactgcaaaagaaacaagtcatcacccaaaaagtccggcagtactgctgatgaagatgagcttcagatttacaagaaggttaaagcacttttcgatggccacccggacttgattgatgagttcactcactttttaccaacagtgcctttaccttcactttcctcggtcattgatttcgctaactgcgagacttgcactccaagctaccgtcttttgccagagagtttccccattcctgctgccaccaaacgatcgaagcttgcttctcaagtattgaatgatcgttggatatgcgttccgagtactaattcaagaggaggaggaggaggaaacacacaacaaaacatgttcgggtgggaagataaaaggttcgaacttgataggaaggtgaacactgtcagttcagcctcaaagagtatcaaaaagctgctgaaaaagattgaaaaggatagtccatcagagatctatattgaagatcatctcacggagctgaatttgaagtgcattaagggattgtatgatgagcaagggcttaatgcaatggatgagctgaggaataatattcgaggggctttacctgtattgttgaatcggttgaagcaacaggaagaagaactgaaacaacgccgatcatttcttaaccaaaagtgggctcatcatatgaaagtttttaattgcaggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

405

Amino Acids

47.02

Weight (kDa)

8.76

Isoelectric Point (pI)

53.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23810 AT1G24210 AT1G24220 AT1G24220 AT1G24230 AT1G24250 AT1G27240 AT1G27260 AT1G27270 AT1G27280
fragaria_vesca	FvH4_3g01921 FvH4_3g01930 FvH4_5g11770 FvH4_5g22630
malus_domestica	MD08G1247800.v1.1
pyrus_communis	pycom08g21470 pycom15g39040
rosa_chinensis	RchiOBHm_Chr5g0002831 RchiOBHm_Chr5g0002841
rosa_laevigata	RLG00000003026 RLG00000003029 RLG00000031063 RLG00000031064
rosa_multiflora	Rmu_co8115592.1_g000001 Rmu_co8158784.1_g000001 Rmu_sc0012670.1_g000008 Rmu_sc0012670.1_g000009 Rmu_sc0013603.1_g000011 Rmu_sc0013603.1_g000012
rosa_roxburghii	Rroxscaffold_1G00073010 Rroxscaffold_1G00073020 Rroxscaffold_3G00248150
rosa_rugosa	Rorug04G0400000 Rorug04G0400100
rosa_samantha	Rh5AG022900 Rh5BG025500 Rh5BG025600 Rh5CG025400 Rh5CG025500 Rh5DG024000 Rh5DG024100 Rh7AG255700 Rh7AG256500 Rh7BG250100 Rh7CG272100 Rh7CG272900 Rh7CG273000 Rh7DG262900
rosa_wichuraiana	Rw5G002120 Rw5G002140 Rw7G021870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1203
AccI	GTMKAC	1 cut(s)	159
AccIII	TCCGGA	1 cut(s)	259
AciI	CCGC	2 cut(s)	139, 339
AcoI	YGGCCR	1 cut(s)	631
AcsI	RAATTY	1 cut(s)	1027
AcuI	CTGAAG	1 cut(s)	581
AfaI	GTAC	3 cut(s)	44, 577, 838
AfiI	CCNNNNNNNGG	1 cut(s)	1183
AflIII	ACRYGT	1 cut(s)	879
AhlI	ACTAGT	1 cut(s)	392
AjnI	CCWGG	1 cut(s)	341
AluBI	AGCT	7 cut(s)	427, 595, 738, 793, 961, 1024, 1084
AluI	AGCT	7 cut(s)	427, 595, 738, 793, 961, 1024, 1084
Alw26I	GTCTC	2 cut(s)	292, 716
AlwNI	CAGNNNCTG	1 cut(s)	17
Aor13HI	TCCGGA	1 cut(s)	259
AoxI	GGCC	1 cut(s)	631
ApeKI	GCWGC	2 cut(s)	773, 961
ApoI	RAATTY	1 cut(s)	1027
Asp700I	GAANNNNTTC	1 cut(s)	188
AsuC2I	CCSGG	1 cut(s)	638
AsuHPI	GGTGA	5 cut(s)	215, 448, 503, 549, 934
AsuII	TTCGAA	1 cut(s)	906
BalI	TGGCCA	1 cut(s)	633
BanII	GRGCYC	1 cut(s)	1189
BbvCI	CCTCAGC	1 cut(s)	1085
BbvI	GCAGC	2 cut(s)	760, 948
BccI	CCATC	3 cut(s)	55, 623, 997
BciT130I	CCWGG	1 cut(s)	343
BcnI	CCSGG	1 cut(s)	638
BcoDI	GTCTC	2 cut(s)	292, 716
BcuI	ACTAGT	1 cut(s)	392
BfaI	CTAG	1 cut(s)	393
BfuAI	ACCTGC	1 cut(s)	1203
BglII	AGATCT	1 cut(s)	996
BisI	GCNGC	2 cut(s)	774, 962
BlsI	GCNGC	2 cut(s)	775, 963
BmcAI	AGTACT	3 cut(s)	44, 577, 838
Bme1390I	CCNGG	2 cut(s)	343, 638
BmrFI	CCNGG	2 cut(s)	343, 638
BmsI	GCATC	1 cut(s)	126
BpmI	CTGGAG	1 cut(s)	31
Bpu10I	CCTNAGC	1 cut(s)	1085
Bpu14I	TTCGAA	1 cut(s)	906
BpuEI	CTTGAG	1 cut(s)	786
BpuMI	CCSGG	1 cut(s)	638
BsaJI	CCNNGG	1 cut(s)	696
BsaWI	WCCGGW	1 cut(s)	259
BsaXI	ACNNNNNCTCC	2 cut(s)	715, 745
Bsc4I	CCNNNNNNNGG	1 cut(s)	1183
Bse1I	ACTGG	1 cut(s)	48
Bse3DI	GCAATG	1 cut(s)	1080
BseAI	TCCGGA	1 cut(s)	259
BseBI	CCWGG	1 cut(s)	343
BseDI	CCNNGG	1 cut(s)	696
BseGI	GGATG	1 cut(s)	1084
BseLI	CCNNNNNNNGG	1 cut(s)	1183
BseMI	GCAATG	1 cut(s)	1080
BseMII	CTCAG	1 cut(s)	1076
BseNI	ACTGG	1 cut(s)	48
BseRI	GAGGAG	5 cut(s)	105, 864, 867, 870, 873
BseXI	GCAGC	2 cut(s)	760, 948
BsgI	GTGCAG	1 cut(s)	257
Bsh1285I	CGRYCG	1 cut(s)	788
BshFI	GGCC	1 cut(s)	633
BsiEI	CGRYCG	1 cut(s)	788
BsiSI	CCGG	3 cut(s)	260, 570, 638
BslFI	GGGAC	1 cut(s)	299
BslI	CCNNNNNNNGG	1 cut(s)	1183
BsmAI	GTCTC	2 cut(s)	292, 716
BsmFI	GGGAC	1 cut(s)	299
BsnI	GGCC	1 cut(s)	633
Bsp119I	TTCGAA	1 cut(s)	906
Bsp1286I	GDGCHC	1 cut(s)	1189
Bsp13I	TCCGGA	1 cut(s)	259
Bsp143I	GATC	7 cut(s)	8, 438, 785, 814, 996, 1009, 1163
BspACI	CCGC	2 cut(s)	139, 339
BspANI	GGCC	1 cut(s)	633
BspCNI	CTCAG	1 cut(s)	1077
BspEI	TCCGGA	1 cut(s)	259
BspMI	ACCTGC	1 cut(s)	1203
BspT104I	TTCGAA	1 cut(s)	906
BsrDI	GCAATG	1 cut(s)	1080
BsrI	ACTGG	1 cut(s)	48
BssECI	CCNNGG	1 cut(s)	696
BssMI	GATC	7 cut(s)	8, 438, 785, 814, 996, 1009, 1163
Bst2UI	CCWGG	1 cut(s)	343
Bst4CI	ACNGT	5 cut(s)	19, 212, 676, 743, 931
Bst6I	CTCTTC	1 cut(s)	33
BstAPI	GCANNNNNTGC	1 cut(s)	235
BstBI	TTCGAA	1 cut(s)	906
BstC8I	GCNNGC	1 cut(s)	795
BstDEI	CTNAG	2 cut(s)	423, 1085
BstF5I	GGATG	1 cut(s)	1084
BstKTI	GATC	7 cut(s)	11, 441, 788, 817, 999, 1012, 1166
BstMAI	GTCTC	2 cut(s)	292, 716
BstMBI	GATC	7 cut(s)	8, 438, 785, 814, 996, 1009, 1163
BstMCI	CGRYCG	1 cut(s)	788
BstMWI	GCNNNNNNNGC	3 cut(s)	235, 726, 735
BstNI	CCWGG	1 cut(s)	343
BstNSI	RCATGY	1 cut(s)	883
BstSCI	CCNGG	2 cut(s)	341, 636
BstV1I	GCAGC	2 cut(s)	760, 948
BstX2I	RGATCY	1 cut(s)	996
BstYI	RGATCY	1 cut(s)	996
BsuRI	GGCC	1 cut(s)	633
BtsCI	GGATG	1 cut(s)	1084
BtsI	GCAGTG	1 cut(s)	535
BtsIMutI	CAGTG	5 cut(s)	15, 55, 535, 681, 927
BveI	ACCTGC	1 cut(s)	1203
Cac8I	GCNNGC	1 cut(s)	795
CaiI	CAGNNNCTG	1 cut(s)	17
Csp6I	GTAC	3 cut(s)	43, 576, 837
CviAII	CATG	2 cut(s)	295, 880
CviQI	GTAC	3 cut(s)	43, 576, 837
DdeI	CTNAG	2 cut(s)	423, 1085
DpnI	GATC	7 cut(s)	10, 440, 787, 816, 998, 1011, 1165
DpnII	GATC	7 cut(s)	8, 438, 785, 814, 996, 1009, 1163
EaeI	YGGCCR	1 cut(s)	631
Eam1104I	CTCTTC	1 cut(s)	33
EarI	CTCTTC	1 cut(s)	33
Eco24I	GRGCYC	1 cut(s)	1189
Eco57I	CTGAAG	1 cut(s)	581
EcoRII	CCWGG	1 cut(s)	341
EcoT38I	GRGCYC	1 cut(s)	1189
FaeI	CATG	2 cut(s)	298, 883
FalI	AAGNNNNNCTT	2 cut(s)	579, 611
FaqI	GGGAC	1 cut(s)	299
FatI	CATG	2 cut(s)	294, 879
FauNDI	CATATG	1 cut(s)	1194
FblI	GTMKAC	1 cut(s)	159
Fnu4HI	GCNGC	2 cut(s)	774, 962
FokI	GGATG	1 cut(s)	1091
FriOI	GRGCYC	1 cut(s)	1189
Fsp4HI	GCNGC	2 cut(s)	774, 962
FspBI	CTAG	1 cut(s)	393
GluI	GCNGC	2 cut(s)	774, 962
GsuI	CTGGAG	1 cut(s)	31
HaeIII	GGCC	1 cut(s)	633
HapII	CCGG	3 cut(s)	260, 570, 638
Hin1II	CATG	2 cut(s)	298, 883
HindIII	AAGCTT	2 cut(s)	425, 791
HinfI	GANTC	2 cut(s)	419, 1123
HpaII	CCGG	3 cut(s)	260, 570, 638
HphI	GGTGA	5 cut(s)	215, 448, 503, 549, 934
Hpy166II	GTNNAC	5 cut(s)	53, 160, 451, 657, 925
Hpy188I	TCNGA	4 cut(s)	13, 600, 834, 994
Hpy188III	TCNNGA	4 cut(s)	260, 334, 526, 846
Hpy8I	GTNNAC	5 cut(s)	53, 160, 451, 657, 925
Hpy99I	CGWCG	1 cut(s)	386
HpyAV	CCTTC	7 cut(s)	100, 226, 245, 482, 604, 696, 913
HpyCH4III	ACNGT	5 cut(s)	19, 212, 676, 743, 931
HpyCH4IV	ACGT	1 cut(s)	312
HpyCH4V	TGCA	7 cut(s)	117, 238, 540, 729, 1038, 1073, 1212
HpyF10VI	GCNNNNNNNGC	3 cut(s)	235, 726, 735
HpyF3I	CTNAG	2 cut(s)	423, 1085
HpySE526I	ACGT	1 cut(s)	312
Hsp92II	CATG	2 cut(s)	298, 883
Kpn2I	TCCGGA	1 cut(s)	259
Kzo9I	GATC	7 cut(s)	8, 438, 785, 814, 996, 1009, 1163
LmnI	GCTCC	1 cut(s)	1021
Lsp1109I	GCAGC	2 cut(s)	760, 948
LweI	GCATC	1 cut(s)	126
MaeI	CTAG	1 cut(s)	393
MaeII	ACGT	1 cut(s)	312
MaeIII	GTNAC	1 cut(s)	203
MalI	GATC	7 cut(s)	10, 440, 787, 816, 998, 1011, 1165
MboI	GATC	7 cut(s)	8, 438, 785, 814, 996, 1009, 1163
MboII	GAAGA	6 cut(s)	50, 599, 905, 1019, 1154, 1157
MflI	RGATCY	1 cut(s)	996
MhlI	GDGCHC	1 cut(s)	1189
MlsI	TGGCCA	1 cut(s)	633
MluCI	AATT	6 cut(s)	67, 306, 529, 841, 1027, 1207
MluNI	TGGCCA	1 cut(s)	633
MlyI	GAGTC	1 cut(s)	413
MmeI	TCCRAC	1 cut(s)	800
Mox20I	TGGCCA	1 cut(s)	633
MroI	TCCGGA	1 cut(s)	259
MroXI	GAANNNNTTC	1 cut(s)	188
MscI	TGGCCA	1 cut(s)	633
MseI	TTAA	6 cut(s)	309, 615, 1041, 1068, 1173, 1206
MslI	CAYNNNNRTG	1 cut(s)	384
Msp20I	TGGCCA	1 cut(s)	633
MspI	CCGG	3 cut(s)	260, 570, 638
MspR9I	CCNGG	2 cut(s)	343, 638
MvaI	CCWGG	1 cut(s)	343
MwoI	GCNNNNNNNGC	3 cut(s)	235, 726, 735
NciI	CCSGG	1 cut(s)	638
NdeI	CATATG	1 cut(s)	1194
NdeII	GATC	7 cut(s)	8, 438, 785, 814, 996, 1009, 1163
NlaIII	CATG	2 cut(s)	298, 883
NmuCI	GTSAC	1 cut(s)	203
NspI	RCATGY	1 cut(s)	883
NspV	TTCGAA	1 cut(s)	906
PciI	ACATGT	1 cut(s)	879
PcsI	WCGNNNNNNNCGW	1 cut(s)	717
PdmI	GAANNNNTTC	1 cut(s)	188
PfeI	GAWTC	1 cut(s)	1123
PkrI	GCNGC	2 cut(s)	775, 963
Ple19I	CGATCG	1 cut(s)	788
PleI	GAGTC	1 cut(s)	413
PpsI	GAGTC	1 cut(s)	413
PscI	ACATGT	1 cut(s)	879
Psp6I	CCWGG	1 cut(s)	341
PspGI	CCWGG	1 cut(s)	341
PsrI	GAACNNNNNNTAC	2 cut(s)	134, 166
PstNI	CAGNNNCTG	1 cut(s)	17
PsuI	RGATCY	1 cut(s)	996
PvuI	CGATCG	1 cut(s)	788
RsaI	GTAC	3 cut(s)	44, 577, 838
RsaNI	GTAC	3 cut(s)	43, 576, 837
RseI	CAYNNNNRTG	1 cut(s)	384
SaqAI	TTAA	6 cut(s)	309, 615, 1041, 1068, 1173, 1206
SatI	GCNGC	2 cut(s)	774, 962
Sau3AI	GATC	7 cut(s)	8, 438, 785, 814, 996, 1009, 1163
ScaI	AGTACT	3 cut(s)	44, 577, 838
SchI	GAGTC	1 cut(s)	413
ScrFI	CCNGG	2 cut(s)	343, 638
SduI	GDGCHC	1 cut(s)	1189
SfaNI	GCATC	1 cut(s)	126
SfuI	TTCGAA	1 cut(s)	906
SmiMI	CAYNNNNRTG	1 cut(s)	384
SmlI	CTYRAG	1 cut(s)	801
SmoI	CTYRAG	1 cut(s)	801
SpeI	ACTAGT	1 cut(s)	392
Sse9I	AATT	6 cut(s)	67, 306, 529, 841, 1027, 1207
SsiI	CCGC	2 cut(s)	139, 339
SspI	AATATT	1 cut(s)	1096
SspMI	CTAG	1 cut(s)	393
StyD4I	CCNGG	2 cut(s)	341, 636
TaaI	ACNGT	5 cut(s)	19, 212, 676, 743, 931
TaiI	ACGT	1 cut(s)	315
TaqI	TCGA	8 cut(s)	7, 28, 120, 367, 627, 788, 906, 1099
TaqII	GACCGA	1 cut(s)	688
TasI	AATT	6 cut(s)	67, 306, 529, 841, 1027, 1207
TatI	WGTACW	3 cut(s)	42, 575, 836
TfiI	GAWTC	1 cut(s)	1123
Tru1I	TTAA	6 cut(s)	309, 615, 1041, 1068, 1173, 1206
Tru9I	TTAA	6 cut(s)	309, 615, 1041, 1068, 1173, 1206
TscAI	CASTG	5 cut(s)	22, 55, 542, 681, 934
TseFI	GTSAC	1 cut(s)	203
TseI	GCWGC	2 cut(s)	773, 961
Tsp45I	GTSAC	1 cut(s)	203
TspDTI	ATGAA	3 cut(s)	197, 600, 1211
TspGWI	ACGGA	2 cut(s)	12, 1034
TspRI	CASTG	5 cut(s)	22, 55, 542, 681, 934
XapI	RAATTY	1 cut(s)	1027
XceI	RCATGY	1 cut(s)	883
XmiI	GTMKAC	1 cut(s)	159
XmnI	GAANNNNTTC	1 cut(s)	188
XspI	CTAG	1 cut(s)	393
ZrmI	AGTACT	3 cut(s)	44, 577, 838

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.