Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001478

Physical Location & Seq

Genomic Coordinates Forward (+)

984124 .. 985287

Gene Structure 1164 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g01930.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGTTCCTTCTCGACAGAAACAAGAGCACTCGGATGAAAAATCAAGGAAGGACTGCATCGAATTTGTAAAGACCTTGCAGAACTTCAACTCCTATGTCTACCAAGAGTTCGTCCATCTCATGAAAGACTTCAAGCCAGAAAGTGATGACTGTATTAAGGCATTGAAACACAAGGTGAAGGAATTGTTTGAAGGGCGACCGGATTTGATATTAGGGTTCAATGCCTTCTTGCCTAAGAGACATAAAATCAACGTCCCAATAATCCCAGTGAAAGTCCAGATCAACAGGAGACTCCCAAGAGTACTTTCTCGAAAGAGAAAGCGCTGCAATGATGCTAGTGATCATGTTTATGGTGCTGGATCTAATGATTCCAAGCTTCAAAAAGTGATCGATTTTGTGAACAAGGTTAAAGATAGATTTCATAACCACGATAATGAGGAAGGTGAGGATGTGTTTCAGTCCTTTTTAGATGTTTTCTTGAATAATCACCGCAAAAGAAACAAGTTGTCACCCAGTAAGTCCATCACTGCTGATGAAGATGAGCTTCAGATTTACAAGAAGGTTGAAGAACTTTTTGATGGCCATCCAGACTTAATTGATGAGTTCACCAACTTTTTACCAACAGTGCCTTTGCCTACACTTTCCTCAGTCATTGATTCCGCTAACTACTGCGAGACTTGCACTCCAAGCTACCGTCTTCTGCCAGAGAATTTCCCCATTCCTGCTGCCACCAAAAGATCGAAGCTTACTTCTCAAGTATTGAATGATCGTTTGGTATGCGTTCCTAGTACTACTTCAAGAGGAGGAGGAGGACGAAACACACAACAATACAAGTCCGGGTGGGAAGATAAAAGGTTCGAAGTTGATAGGAAGGTGAACACTGTGAGGTCAACCCTAAAGAGCATCAGCGCGCTGATGGAAAAGATCGAAAAGGATTGTCCATCAAAGATCTATGTCGAAGATCATCTCACCGAGCTGAATTTGAAGTGCATTCAGAGATGTTATGAAGAGCAAGGGATGAAGGCCATGGATGAGCTGAGAAAAGATATTCGAGGGGCTTTGCCCTTGTTGATGAAAGGGTTGAAGCTACAGGAAGAAAAACTGAAACAACACCGATCAAGTCTGAACCGAAAGTGGGCTTGTCATGTTCTTAGTTGCAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAH Sin3_corepress

Protein Analysis

388

Amino Acids

44.89

Weight (kDa)

9.11

Isoelectric Point (pI)

50.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAH	PF02671	33 - 77	4.9e-12	Paired amphipathic helix repeat
PAH	PF02671	151 - 206	5.7e-07	Paired amphipathic helix repeat
Sin3_corepress	PF08295	226 - 311	8e-16	Sin3 family co-repressor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23810 AT1G24210 AT1G24220 AT1G24220 AT1G24230 AT1G24250 AT1G27240 AT1G27260 AT1G27270 AT1G27280
fragaria_vesca	FvH4_3g01921 FvH4_3g01930 FvH4_5g11770 FvH4_5g22630
malus_domestica	MD08G1247800.v1.1
pyrus_communis	pycom08g21470 pycom15g39040
rosa_chinensis	RchiOBHm_Chr5g0002831 RchiOBHm_Chr5g0002841
rosa_laevigata	RLG00000003026 RLG00000003029 RLG00000031063 RLG00000031064
rosa_multiflora	Rmu_co8115592.1_g000001 Rmu_co8158784.1_g000001 Rmu_sc0012670.1_g000008 Rmu_sc0012670.1_g000009 Rmu_sc0013603.1_g000011 Rmu_sc0013603.1_g000012
rosa_roxburghii	Rroxscaffold_1G00073010 Rroxscaffold_1G00073020 Rroxscaffold_3G00248150
rosa_rugosa	Rorug04G0400000 Rorug04G0400100
rosa_samantha	Rh5AG022900 Rh5BG025500 Rh5BG025600 Rh5CG025400 Rh5CG025500 Rh5DG024000 Rh5DG024100 Rh7AG255700 Rh7AG256500 Rh7BG250100 Rh7CG272100 Rh7CG272900 Rh7CG273000 Rh7DG262900
rosa_wichuraiana	Rw5G002120 Rw5G002140 Rw7G021870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1149
AccI	GTMKAC	1 cut(s)	99
AccII	CGCG	1 cut(s)	911
AciI	CCGC	2 cut(s)	490, 660
AclWI	GGATC	1 cut(s)	367
AcoI	YGGCCR	1 cut(s)	580
AcsI	RAATTY	3 cut(s)	62, 709, 979
AcuI	CTGAAG	1 cut(s)	530
AdeI	CACNNNGTG	1 cut(s)	175
AfaI	GTAC	2 cut(s)	303, 790
AfeI	AGCGCT	1 cut(s)	323
AfiI	CCNNNNNNNGG	1 cut(s)	1135
AjuI	GAANNNNNNNTTGG	4 cut(s)	289, 321, 755, 787
AloI	GAACNNNNNNTCC	2 cut(s)	74, 106
AluBI	AGCT	7 cut(s)	376, 544, 690, 745, 976, 1036, 1087
AluI	AGCT	7 cut(s)	376, 544, 690, 745, 976, 1036, 1087
Alw21I	GWGCWC	1 cut(s)	30
Alw26I	GTCTC	3 cut(s)	232, 283, 668
AlwI	GGATC	1 cut(s)	367
Aor51HI	AGCGCT	1 cut(s)	323
AoxI	GGCC	2 cut(s)	580, 1023
ApeKI	GCWGC	2 cut(s)	324, 725
ApoI	RAATTY	3 cut(s)	62, 709, 979
Asp700I	GAANNNNTTC	1 cut(s)	128
AspLEI	GCGC	3 cut(s)	324, 911, 913
AsuC2I	CCSGG	1 cut(s)	838
AsuHPI	GGTGA	7 cut(s)	187, 455, 479, 501, 598, 886, 961
AsuII	TTCGAA	1 cut(s)	858
BalI	TGGCCA	1 cut(s)	582
BbsI	GAAGAC	1 cut(s)	689
Bbv12I	GWGCWC	1 cut(s)	30
BbvI	GCAGC	2 cut(s)	311, 712
BccI	CCATC	6 cut(s)	123, 530, 572, 591, 910, 949
BclI	TGATCA	1 cut(s)	340
BcnI	CCSGG	1 cut(s)	838
BcoDI	GTCTC	3 cut(s)	232, 283, 668
BfaI	CTAG	2 cut(s)	336, 786
BfmI	CTRYAG	1 cut(s)	1088
BfoI	RGCGCY	1 cut(s)	325
BfuAI	ACCTGC	1 cut(s)	1149
BglII	AGATCT	1 cut(s)	948
BisI	GCNGC	2 cut(s)	325, 726
BlsI	GCNGC	2 cut(s)	326, 727
BmcAI	AGTACT	2 cut(s)	303, 790
Bme1390I	CCNGG	1 cut(s)	838
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	838
BmrI	ACTGGG	2 cut(s)	260, 507
BmsI	GCATC	3 cut(s)	66, 322, 912
BmuI	ACTGGG	2 cut(s)	260, 507
BpiI	GAAGAC	1 cut(s)	689
Bpu14I	TTCGAA	1 cut(s)	858
BpuEI	CTTGAG	1 cut(s)	738
BpuMI	CCSGG	1 cut(s)	838
Bsa29I	ATCGAT	1 cut(s)	390
BsaBI	GATNNNNATC	1 cut(s)	582
BsaJI	CCNNGG	1 cut(s)	1026
BsaWI	WCCGGW	1 cut(s)	199
BsaXI	ACNNNNNCTCC	4 cut(s)	74, 104, 667, 697
Bsc4I	CCNNNNNNNGG	1 cut(s)	1135
Bse1I	ACTGG	2 cut(s)	266, 513
Bse3DI	GCAATG	1 cut(s)	334
Bse8I	GATNNNNATC	1 cut(s)	582
BseCI	ATCGAT	1 cut(s)	390
BseDI	CCNNGG	1 cut(s)	1026
BseGI	GGATG	5 cut(s)	40, 454, 583, 1023, 1036
BseJI	GATNNNNATC	1 cut(s)	582
BseLI	CCNNNNNNNGG	1 cut(s)	1135
BseMI	GCAATG	1 cut(s)	334
BseMII	CTCAG	2 cut(s)	660, 1028
BseNI	ACTGG	2 cut(s)	266, 513
BsePI	GCGCGC	1 cut(s)	909
BseRI	GAGGAG	3 cut(s)	816, 819, 822
BseXI	GCAGC	2 cut(s)	311, 712
Bsh1236I	CGCG	1 cut(s)	911
Bsh1285I	CGRYCG	1 cut(s)	200
BshFI	GGCC	2 cut(s)	582, 1025
BshVI	ATCGAT	1 cut(s)	390
BsiEI	CGRYCG	1 cut(s)	200
BsiHKAI	GWGCWC	1 cut(s)	30
BsiSI	CCGG	2 cut(s)	200, 837
BslFI	GGGAC	1 cut(s)	239
BslI	CCNNNNNNNGG	1 cut(s)	1135
BsmAI	GTCTC	3 cut(s)	232, 283, 668
BsmFI	GGGAC	1 cut(s)	239
BsmI	GAATGC	1 cut(s)	990
BsnI	GGCC	2 cut(s)	582, 1025
Bsp119I	TTCGAA	1 cut(s)	858
Bsp1286I	GDGCHC	1 cut(s)	30
Bsp19I	CCATGG	1 cut(s)	1026
BspACI	CCGC	2 cut(s)	490, 660
BspANI	GGCC	2 cut(s)	582, 1025
BspCNI	CTCAG	2 cut(s)	659, 1029
BspDI	ATCGAT	1 cut(s)	390
BspFNI	CGCG	1 cut(s)	911
BspHI	TCATGA	1 cut(s)	120
BspLI	GGNNCC	1 cut(s)	6
BspMI	ACCTGC	1 cut(s)	1149
BspPI	GGATC	1 cut(s)	367
BspQI	GCTCTTC	1 cut(s)	1002
BspT104I	TTCGAA	1 cut(s)	858
BsrDI	GCAATG	1 cut(s)	334
BsrI	ACTGG	2 cut(s)	266, 513
BssECI	CCNNGG	1 cut(s)	1026
BssHII	GCGCGC	1 cut(s)	909
BssT1I	CCWWGG	1 cut(s)	1026
Bst4CI	ACNGT	4 cut(s)	152, 625, 695, 883
Bst6I	CTCTTC	1 cut(s)	1002
BstBI	TTCGAA	1 cut(s)	858
BstC8I	GCNNGC	1 cut(s)	911
BstDEI	CTNAG	4 cut(s)	234, 646, 1037, 1151
BstDSI	CCRYGG	1 cut(s)	1026
BstF5I	GGATG	5 cut(s)	40, 454, 583, 1023, 1036
BstFNI	CGCG	1 cut(s)	911
BstH2I	RGCGCY	1 cut(s)	325
BstHHI	GCGC	3 cut(s)	324, 911, 913
BstMAI	GTCTC	3 cut(s)	232, 283, 668
BstMCI	CGRYCG	1 cut(s)	200
BstMWI	GCNNNNNNNGC	2 cut(s)	678, 687
BstSCI	CCNGG	1 cut(s)	836
BstSFI	CTRYAG	1 cut(s)	1088
BstUI	CGCG	1 cut(s)	911
BstV1I	GCAGC	2 cut(s)	311, 712
BstV2I	GAAGAC	1 cut(s)	689
BstX2I	RGATCY	2 cut(s)	359, 948
BstYI	RGATCY	2 cut(s)	359, 948
Bsu15I	ATCGAT	1 cut(s)	390
BsuRI	GGCC	2 cut(s)	582, 1025
BsuTUI	ATCGAT	1 cut(s)	390
BtgI	CCRYGG	1 cut(s)	1026
BtsCI	GGATG	5 cut(s)	40, 454, 583, 1023, 1036
BtsI	GCAGTG	1 cut(s)	525
BtsIMutI	CAGTG	4 cut(s)	273, 525, 630, 879
BveI	ACCTGC	1 cut(s)	1149
Cac8I	GCNNGC	1 cut(s)	911
CciI	TCATGA	1 cut(s)	120
CfoI	GCGC	3 cut(s)	324, 911, 913
ClaI	ATCGAT	1 cut(s)	390
Csp6I	GTAC	2 cut(s)	302, 789
CviAII	CATG	4 cut(s)	121, 344, 1027, 1145
CviQI	GTAC	2 cut(s)	302, 789
DdeI	CTNAG	4 cut(s)	234, 646, 1037, 1151
DraIII	CACNNNGTG	1 cut(s)	175
EaeI	YGGCCR	1 cut(s)	580
Eam1104I	CTCTTC	1 cut(s)	1002
EarI	CTCTTC	1 cut(s)	1002
Eco130I	CCWWGG	1 cut(s)	1026
Eco47III	AGCGCT	1 cut(s)	323
Eco57I	CTGAAG	1 cut(s)	530
EcoT14I	CCWWGG	1 cut(s)	1026
ErhI	CCWWGG	1 cut(s)	1026
FaeI	CATG	4 cut(s)	124, 347, 1030, 1148
FalI	AAGNNNNNCTT	2 cut(s)	528, 560
FaqI	GGGAC	1 cut(s)	239
FatI	CATG	4 cut(s)	120, 343, 1026, 1144
FbaI	TGATCA	1 cut(s)	340
FblI	GTMKAC	1 cut(s)	99
Fnu4HI	GCNGC	2 cut(s)	325, 726
FokI	GGATG	5 cut(s)	47, 461, 570, 1030, 1043
Fsp4HI	GCNGC	2 cut(s)	325, 726
FspBI	CTAG	2 cut(s)	336, 786
GlaI	GCGC	3 cut(s)	323, 910, 912
GluI	GCNGC	2 cut(s)	325, 726
HaeII	RGCGCY	1 cut(s)	325
HaeIII	GGCC	2 cut(s)	582, 1025
HapII	CCGG	2 cut(s)	200, 837
HhaI	GCGC	3 cut(s)	324, 911, 913
Hin1II	CATG	4 cut(s)	124, 347, 1030, 1148
Hin6I	GCGC	3 cut(s)	322, 909, 911
HinP1I	GCGC	3 cut(s)	322, 909, 911
HincII	GTYRAC	1 cut(s)	891
HindII	GTYRAC	1 cut(s)	891
HindIII	AAGCTT	2 cut(s)	374, 743
HinfI	GANTC	3 cut(s)	291, 368, 656
HpaII	CCGG	2 cut(s)	200, 837
HphI	GGTGA	7 cut(s)	187, 455, 479, 501, 598, 886, 961
Hpy166II	GTNNAC	5 cut(s)	100, 400, 606, 877, 891
Hpy188I	TCNGA	4 cut(s)	34, 549, 996, 1125
Hpy188III	TCNNGA	7 cut(s)	12, 121, 277, 309, 478, 587, 798
Hpy8I	GTNNAC	5 cut(s)	100, 400, 606, 877, 891
HpyAV	CCTTC	9 cut(s)	18, 43, 172, 185, 235, 434, 553, 865, 1015
HpyCH4III	ACNGT	4 cut(s)	152, 625, 695, 883
HpyCH4IV	ACGT	1 cut(s)	252
HpyCH4V	TGCA	6 cut(s)	57, 79, 327, 681, 990, 1158
HpyF10VI	GCNNNNNNNGC	2 cut(s)	678, 687
HpyF3I	CTNAG	4 cut(s)	234, 646, 1037, 1151
HpySE526I	ACGT	1 cut(s)	252
Hsp92II	CATG	4 cut(s)	124, 347, 1030, 1148
HspAI	GCGC	3 cut(s)	322, 909, 911
Ksp22I	TGATCA	1 cut(s)	340
LguI	GCTCTTC	1 cut(s)	1002
Lsp1109I	GCAGC	2 cut(s)	311, 712
LweI	GCATC	3 cut(s)	66, 322, 912
MaeI	CTAG	2 cut(s)	336, 786
MaeII	ACGT	1 cut(s)	252
MaeIII	GTNAC	1 cut(s)	507
MboII	GAAGA	7 cut(s)	548, 578, 689, 857, 971, 1019, 1106
MflI	RGATCY	2 cut(s)	359, 948
MhlI	GDGCHC	1 cut(s)	30
MlsI	TGGCCA	1 cut(s)	582
MluCI	AATT	5 cut(s)	62, 182, 594, 709, 979
MluNI	TGGCCA	1 cut(s)	582
MlyI	GAGTC	1 cut(s)	285
MnlI	CCTC	9 cut(s)	430, 439, 655, 794, 797, 800, 803, 879, 1046
Mox20I	TGGCCA	1 cut(s)	582
MroXI	GAANNNNTTC	1 cut(s)	128
MscI	TGGCCA	1 cut(s)	582
MseI	TTAA	3 cut(s)	156, 408, 593
MslI	CAYNNNNRTG	3 cut(s)	33, 348, 432
Msp20I	TGGCCA	1 cut(s)	582
MspI	CCGG	2 cut(s)	200, 837
MspR9I	CCNGG	1 cut(s)	838
Mva1269I	GAATGC	1 cut(s)	990
MvnI	CGCG	1 cut(s)	911
MwoI	GCNNNNNNNGC	2 cut(s)	678, 687
NciI	CCSGG	1 cut(s)	838
NcoI	CCATGG	1 cut(s)	1026
NlaIII	CATG	4 cut(s)	124, 347, 1030, 1148
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	507
NspV	TTCGAA	1 cut(s)	858
PagI	TCATGA	1 cut(s)	120
PauI	GCGCGC	1 cut(s)	909
PciSI	GCTCTTC	1 cut(s)	1002
PctI	GAATGC	1 cut(s)	990
PdmI	GAANNNNTTC	1 cut(s)	128
PfeI	GAWTC	2 cut(s)	368, 656
PkrI	GCNGC	2 cut(s)	326, 727
PleI	GAGTC	1 cut(s)	285
PpsI	GAGTC	1 cut(s)	285
PspN4I	GGNNCC	1 cut(s)	6
PsuI	RGATCY	2 cut(s)	359, 948
PteI	GCGCGC	1 cut(s)	909
RsaI	GTAC	2 cut(s)	303, 790
RsaNI	GTAC	2 cut(s)	302, 789
RseI	CAYNNNNRTG	3 cut(s)	33, 348, 432
SapI	GCTCTTC	1 cut(s)	1002
SaqAI	TTAA	3 cut(s)	156, 408, 593
SatI	GCNGC	2 cut(s)	325, 726
ScaI	AGTACT	2 cut(s)	303, 790
SchI	GAGTC	1 cut(s)	285
ScrFI	CCNGG	1 cut(s)	838
SduI	GDGCHC	1 cut(s)	30
SfaNI	GCATC	3 cut(s)	66, 322, 912
SfcI	CTRYAG	1 cut(s)	1088
SfuI	TTCGAA	1 cut(s)	858
SmiMI	CAYNNNNRTG	3 cut(s)	33, 348, 432
SmlI	CTYRAG	1 cut(s)	753
SmoI	CTYRAG	1 cut(s)	753
Sse9I	AATT	5 cut(s)	62, 182, 594, 709, 979
SsiI	CCGC	2 cut(s)	490, 660
SspMI	CTAG	2 cut(s)	336, 786
StyD4I	CCNGG	1 cut(s)	836
StyI	CCWWGG	1 cut(s)	1026
TaaI	ACNGT	4 cut(s)	152, 625, 695, 883
TaiI	ACGT	1 cut(s)	255
TaqI	TCGA	9 cut(s)	13, 60, 310, 390, 740, 858, 927, 957, 1051
TasI	AATT	5 cut(s)	62, 182, 594, 709, 979
TatI	WGTACW	2 cut(s)	301, 788
TfiI	GAWTC	2 cut(s)	368, 656
Tru1I	TTAA	3 cut(s)	156, 408, 593
Tru9I	TTAA	3 cut(s)	156, 408, 593
TscAI	CASTG	4 cut(s)	273, 532, 630, 886
TseFI	GTSAC	1 cut(s)	507
TseI	GCWGC	2 cut(s)	324, 725
Tsp45I	GTSAC	1 cut(s)	507
TspDTI	ATGAA	7 cut(s)	51, 137, 410, 549, 1020, 1034, 1088
TspRI	CASTG	4 cut(s)	273, 532, 630, 886
XapI	RAATTY	3 cut(s)	62, 709, 979
XmiI	GTMKAC	1 cut(s)	99
XmnI	GAANNNNTTC	1 cut(s)	128
XspI	CTAG	2 cut(s)	336, 786
ZrmI	AGTACT	2 cut(s)	303, 790

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.