Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001478

Physical Location & Seq

Genomic Coordinates Forward (+)

1797392 .. 1798779

Gene Structure 1388 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G002120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGATGAAGGAGAAGAGCGCAGGAGAAGAGGCCAGCAGCACCAAAGCGTCGTGGGAGAAGCGCTCCCTCAAATTTATTGACTCCTTGAGGAACTTCCCATGGTTCAAGGAGTATCAGAACCTCATGAAAGACTACAAGAACAAAGAAATCGACTTGGCAATTTTGGTGGAGAAGATGGTGGAATTGTTTAAAGGGCGCCCGGAGTTGATAGCAGGGTTCAATAAATTCTTGCCAGAAACATGTCAAATTACCATACCAGCACCAACGCTACTACCTAGGGTTAGAATTGTTTGCCAAAAGAGGAAGCGCAGCGATGATAGTGCTAGTGATAGTGATGGTGGTATTGACGGTGGAGCTAAGGACTCTAAGATTCGAAAAGTTATCGGGTGCGATTACAAGACTGAGGGAAGGTTTCGCGACGAAGATAAGGAAAGTGATGAAGATTCTAAACTTCGGAAAGTTATTGCTTTTGTGAACAAGGTCGAGGAAAGGTTCCGCAACAACAATGATGATGGTGGTGACGATGATGATACCTGTCAATCCTATATAGAGGTTTTCTTGGATATGGTCTGCAAAAGAAACAAATCATCACCCAATAGGTCTATCGATGCTGATGAAGAAGAGCTTCAGATTTACAAGAAGGTTGCAACACTTTTGGAAGGCCACTCGGACTTAATTGATGAGTTCACCCAGTTTTTAACCGAAGTGCCTAGAGTCGACTCCATCATTGATTTCCGTAAGTGCAAGACTTGCACTCCAAGCTACCGTCTTTTGCCAAAAAATCTCCCCATTCCTGCTTCTACCAAAAGATCGAAGCTAGCTTCTGAAGTATTAAATGATCGTTGGGTATGCGTTAACACTAGTCCTAGTACTACTAGTTCTACTTCAAGAGGAGGTGGACGACGCATAAACGGCAAATCGCAGCATGAGCAAGAACTTTTAGACTGGGAAGAAGAAAAGTATGAACATGATATGTTGGAAGAGTATGTGAATTCGGCCGCAAATAATATCGCAACGCTAATAAAAGAGATCAAAAACGAGAGTCCGACGGAGATTTATCTTGAAGAACATCTCACGGAGATGAATTTGAGGTGCATTGAGAGATTGTATGGTCTGCGAGGGCGTGATATGGTTGATTTGTTGAAGAACAATATTCAAGCGGTTTTGCCTGTTATATTAAGACGGTTGAAGCAAAAGCAGAAAGAACTGAAACGAAAACGTTCTGATCTAAAACAAGAGTGGGCTCATTTATTTCCTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

420

Amino Acids

48.59

Weight (kDa)

6.35

Isoelectric Point (pI)

59.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAH	PF02671	37 - 77	1.3e-09	Paired amphipathic helix repeat
Sin3_corepress	PF08295	249 - 350	2.7e-19	Sin3 family co-repressor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23810 AT1G24210 AT1G24220 AT1G24220 AT1G24230 AT1G24250 AT1G27240 AT1G27260 AT1G27270 AT1G27280
fragaria_vesca	FvH4_3g01921 FvH4_3g01930 FvH4_5g11770 FvH4_5g22630
malus_domestica	MD08G1247800.v1.1
pyrus_communis	pycom08g21470 pycom15g39040
rosa_chinensis	RchiOBHm_Chr5g0002831 RchiOBHm_Chr5g0002841
rosa_laevigata	RLG00000003026 RLG00000003029 RLG00000031063 RLG00000031064
rosa_multiflora	Rmu_co8115592.1_g000001 Rmu_co8158784.1_g000001 Rmu_sc0012670.1_g000008 Rmu_sc0012670.1_g000009 Rmu_sc0013603.1_g000011 Rmu_sc0013603.1_g000012
rosa_roxburghii	Rroxscaffold_1G00073010 Rroxscaffold_1G00073020 Rroxscaffold_3G00248150
rosa_rugosa	Rorug04G0400000 Rorug04G0400100
rosa_samantha	Rh5AG022900 Rh5BG025500 Rh5BG025600 Rh5CG025400 Rh5CG025500 Rh5DG024000 Rh5DG024100 Rh7AG255700 Rh7AG256500 Rh7BG250100 Rh7CG272100 Rh7CG272900 Rh7CG273000 Rh7DG262900
rosa_wichuraiana	Rw5G002120 Rw5G002140 Rw7G021870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	195
AccI	GTMKAC	1 cut(s)	717
AccII	CGCG	1 cut(s)	417
AciI	CCGC	3 cut(s)	496, 999, 1160
AclI	AACGTT	1 cut(s)	1219
AcoI	YGGCCR	1 cut(s)	996
AcsI	RAATTY	4 cut(s)	71, 224, 991, 1084
AcuI	CTGAAG	2 cut(s)	611, 846
AcyI	GRCGYC	1 cut(s)	196
AfaI	GTAC	1 cut(s)	871
AfeI	AGCGCT	1 cut(s)	62
AflIII	ACRYGT	1 cut(s)	239
AgsI	TTSAA	7 cut(s)	106, 220, 888, 1064, 1144, 1157, 1189
AhlI	ACTAGT	2 cut(s)	860, 875
AluBI	AGCT	5 cut(s)	356, 625, 762, 817, 821
AluI	AGCT	5 cut(s)	356, 625, 762, 817, 821
Aor51HI	AGCGCT	1 cut(s)	62
AoxI	GGCC	3 cut(s)	30, 661, 996
ApeKI	GCWGC	3 cut(s)	36, 309, 922
ApoI	RAATTY	4 cut(s)	71, 224, 991, 1084
Asp700I	GAANNNNTTC	2 cut(s)	624, 1219
AspA2I	CCTAGG	1 cut(s)	275
AspLEI	GCGC	4 cut(s)	20, 63, 198, 309
AsuC2I	CCSGG	1 cut(s)	200
AsuHPI	GGTGA	3 cut(s)	530, 582, 679
AsuII	TTCGAA	1 cut(s)	373
AsuNHI	GCTAGC	1 cut(s)	817
AvrII	CCTAGG	1 cut(s)	275
BanI	GGYRCC	1 cut(s)	195
BanII	GRGCYC	1 cut(s)	1246
BbvI	GCAGC	3 cut(s)	48, 321, 934
BccI	CCATC	4 cut(s)	169, 329, 506, 731
BceAI	ACGGC	1 cut(s)	928
BcgI	CGANNNNNNTGC	2 cut(s)	302, 336
BcnI	CCSGG	1 cut(s)	200
BcuI	ACTAGT	2 cut(s)	860, 875
BfaI	CTAG	7 cut(s)	276, 324, 711, 818, 861, 867, 876
BfoI	RGCGCY	2 cut(s)	64, 199
BisI	GCNGC	4 cut(s)	37, 310, 923, 999
BlnI	CCTAGG	1 cut(s)	275
BlsI	GCNGC	4 cut(s)	38, 311, 924, 1000
BmcAI	AGTACT	1 cut(s)	871
Bme1390I	CCNGG	1 cut(s)	200
BmiI	GGNNCC	2 cut(s)	197, 494
BmrFI	CCNGG	1 cut(s)	200
BmrI	ACTGGG	2 cut(s)	685, 955
BmsI	GCATC	1 cut(s)	598
BmtI	GCTAGC	1 cut(s)	821
BmuI	ACTGGG	2 cut(s)	685, 955
BplI	GAGNNNNNCTC	2 cut(s)	47, 79
Bpu10I	CCTNAGC	1 cut(s)	357
Bpu14I	TTCGAA	1 cut(s)	373
BpuEI	CTTGAG	1 cut(s)	106
BpuMI	CCSGG	1 cut(s)	200
Bsa29I	ATCGAT	1 cut(s)	606
BsaHI	GRCGYC	1 cut(s)	196
BsaJI	CCNNGG	2 cut(s)	98, 275
BsaXI	ACNNNNNCTCC	2 cut(s)	739, 769
Bse1I	ACTGG	2 cut(s)	691, 950
BseCI	ATCGAT	1 cut(s)	606
BseDI	CCNNGG	2 cut(s)	98, 275
BseMII	CTCAG	2 cut(s)	393, 1248
BseNI	ACTGG	2 cut(s)	691, 950
BseRI	GAGGAG	1 cut(s)	906
BseX3I	CGGCCG	1 cut(s)	996
BseXI	GCAGC	3 cut(s)	48, 321, 934
Bsh1236I	CGCG	1 cut(s)	417
Bsh1285I	CGRYCG	1 cut(s)	999
BshFI	GGCC	3 cut(s)	32, 663, 998
BshNI	GGYRCC	1 cut(s)	195
BshVI	ATCGAT	1 cut(s)	606
BsiEI	CGRYCG	1 cut(s)	999
BsiSI	CCGG	1 cut(s)	200
BsnI	GGCC	3 cut(s)	32, 663, 998
Bsp119I	TTCGAA	1 cut(s)	373
Bsp1286I	GDGCHC	1 cut(s)	1246
Bsp143I	GATC	4 cut(s)	809, 838, 1029, 1225
Bsp19I	CCATGG	1 cut(s)	98
Bsp68I	TCGCGA	1 cut(s)	417
BspACI	CCGC	3 cut(s)	496, 999, 1160
BspANI	GGCC	3 cut(s)	32, 663, 998
BspCNI	CTCAG	2 cut(s)	394, 1249
BspDI	ATCGAT	1 cut(s)	606
BspFNI	CGCG	1 cut(s)	417
BspHI	TCATGA	1 cut(s)	123
BspLI	GGNNCC	2 cut(s)	197, 494
BspOI	GCTAGC	1 cut(s)	821
BspQI	GCTCTTC	2 cut(s)	8, 615
BspT104I	TTCGAA	1 cut(s)	373
BspT107I	GGYRCC	1 cut(s)	195
BsrI	ACTGG	2 cut(s)	691, 950
BssECI	CCNNGG	2 cut(s)	98, 275
BssMI	GATC	4 cut(s)	809, 838, 1029, 1225
BssNI	GRCGYC	1 cut(s)	196
BssT1I	CCWWGG	2 cut(s)	98, 275
Bst4CI	ACNGT	3 cut(s)	350, 767, 1185
Bst6I	CTCTTC	4 cut(s)	8, 21, 615, 975
BstACI	GRCGYC	1 cut(s)	196
BstAPI	GCANNNNNTGC	1 cut(s)	750
BstBI	TTCGAA	1 cut(s)	373
BstC8I	GCNNGC	2 cut(s)	34, 819
BstDEI	CTNAG	4 cut(s)	357, 366, 402, 1257
BstDSI	CCRYGG	1 cut(s)	98
BstFNI	CGCG	1 cut(s)	417
BstH2I	RGCGCY	2 cut(s)	64, 199
BstHHI	GCGC	4 cut(s)	20, 63, 198, 309
BstKTI	GATC	4 cut(s)	812, 841, 1032, 1228
BstMBI	GATC	4 cut(s)	809, 838, 1029, 1225
BstMCI	CGRYCG	1 cut(s)	999
BstMWI	GCNNNNNNNGC	4 cut(s)	750, 759, 912, 928
BstNSI	RCATGY	1 cut(s)	243
BstSCI	CCNGG	1 cut(s)	198
BstUI	CGCG	1 cut(s)	417
BstV1I	GCAGC	3 cut(s)	48, 321, 934
BstZI	CGGCCG	1 cut(s)	996
Bsu15I	ATCGAT	1 cut(s)	606
BsuRI	GGCC	3 cut(s)	32, 663, 998
BsuTUI	ATCGAT	1 cut(s)	606
BtgI	CCRYGG	1 cut(s)	98
BtgZI	GCGATG	1 cut(s)	327
BtuMI	TCGCGA	1 cut(s)	417
Cac8I	GCNNGC	2 cut(s)	34, 819
CciI	TCATGA	1 cut(s)	123
CfoI	GCGC	4 cut(s)	20, 63, 198, 309
ClaI	ATCGAT	1 cut(s)	606
CseI	GACGC	2 cut(s)	36, 912
Csp6I	GTAC	1 cut(s)	870
CspCI	CAANNNNNGTGG	2 cut(s)	147, 182
CviAII	CATG	5 cut(s)	99, 124, 240, 926, 968
CviJI	RGCY	9 cut(s)	32, 356, 625, 663, 762, 817, 821, 998, 1244
CviKI_1	RGCY	9 cut(s)	32, 356, 625, 663, 762, 817, 821, 998, 1244
CviQI	GTAC	1 cut(s)	870
DdeI	CTNAG	4 cut(s)	357, 366, 402, 1257
DinI	GGCGCC	1 cut(s)	197
DpnI	GATC	4 cut(s)	811, 840, 1031, 1227
DpnII	GATC	4 cut(s)	809, 838, 1029, 1225
DraI	TTTAAA	1 cut(s)	190
EaeI	YGGCCR	1 cut(s)	996
EagI	CGGCCG	1 cut(s)	996
Eam1104I	CTCTTC	4 cut(s)	8, 21, 615, 975
EarI	CTCTTC	4 cut(s)	8, 21, 615, 975
EclXI	CGGCCG	1 cut(s)	996
Eco130I	CCWWGG	2 cut(s)	98, 275
Eco24I	GRGCYC	1 cut(s)	1246
Eco47III	AGCGCT	1 cut(s)	62
Eco52I	CGGCCG	1 cut(s)	996
Eco57I	CTGAAG	2 cut(s)	611, 846
EcoRI	GAATTC	1 cut(s)	991
EcoT14I	CCWWGG	2 cut(s)	98, 275
EcoT38I	GRGCYC	1 cut(s)	1246
EgeI	GGCGCC	1 cut(s)	197
EheI	GGCGCC	1 cut(s)	197
ErhI	CCWWGG	2 cut(s)	98, 275
FaeI	CATG	5 cut(s)	102, 127, 243, 929, 971
FalI	AAGNNNNNCTT	2 cut(s)	609, 641
FatI	CATG	5 cut(s)	98, 123, 239, 925, 967
FblI	GTMKAC	1 cut(s)	717
Fnu4HI	GCNGC	4 cut(s)	37, 310, 923, 999
FriOI	GRGCYC	1 cut(s)	1246
Fsp4HI	GCNGC	4 cut(s)	37, 310, 923, 999
FspBI	CTAG	7 cut(s)	276, 324, 711, 818, 861, 867, 876
GlaI	GCGC	4 cut(s)	19, 62, 197, 308
GluI	GCNGC	4 cut(s)	37, 310, 923, 999
HaeII	RGCGCY	2 cut(s)	64, 199
HaeIII	GGCC	3 cut(s)	32, 663, 998
HapII	CCGG	1 cut(s)	200
HgaI	GACGC	2 cut(s)	36, 912
HhaI	GCGC	4 cut(s)	20, 63, 198, 309
Hin1I	GRCGYC	1 cut(s)	196
Hin1II	CATG	5 cut(s)	102, 127, 243, 929, 971
Hin6I	GCGC	4 cut(s)	18, 61, 196, 307
HinP1I	GCGC	4 cut(s)	18, 61, 196, 307
HincII	GTYRAC	2 cut(s)	718, 856
HindII	GTYRAC	2 cut(s)	718, 856
HinfI	GANTC	7 cut(s)	80, 362, 370, 443, 714, 719, 1042
HpaI	GTTAAC	1 cut(s)	856
HpaII	CCGG	1 cut(s)	200
HphI	GGTGA	3 cut(s)	530, 582, 679
Hpy166II	GTNNAC	5 cut(s)	475, 687, 718, 856, 899
Hpy188I	TCNGA	7 cut(s)	117, 456, 630, 670, 826, 1047, 1225
Hpy188III	TCNNGA	5 cut(s)	124, 416, 888, 1061, 1256
Hpy8I	GTNNAC	5 cut(s)	475, 687, 718, 856, 899
Hpy99I	CGWCG	4 cut(s)	52, 422, 906, 1051
HpyAV	CCTTC	3 cut(s)	402, 634, 653
HpyCH4III	ACNGT	3 cut(s)	350, 767, 1185
HpyCH4IV	ACGT	1 cut(s)	1219
HpyCH4V	TGCA	5 cut(s)	573, 647, 744, 753, 1095
HpyF10VI	GCNNNNNNNGC	4 cut(s)	750, 759, 912, 928
HpyF3I	CTNAG	4 cut(s)	357, 366, 402, 1257
HpySE526I	ACGT	1 cut(s)	1219
Hsp92I	GRCGYC	1 cut(s)	196
Hsp92II	CATG	5 cut(s)	102, 127, 243, 929, 971
HspAI	GCGC	4 cut(s)	18, 61, 196, 307
KasI	GGCGCC	1 cut(s)	195
KspAI	GTTAAC	1 cut(s)	856
Kzo9I	GATC	4 cut(s)	809, 838, 1029, 1225
LguI	GCTCTTC	2 cut(s)	8, 615
LmnI	GCTCC	2 cut(s)	68, 353
Lsp1109I	GCAGC	3 cut(s)	48, 321, 934
LweI	GCATC	1 cut(s)	598
MaeI	CTAG	7 cut(s)	276, 324, 711, 818, 861, 867, 876
MaeII	ACGT	1 cut(s)	1219
MaeIII	GTNAC	1 cut(s)	518
MalI	GATC	4 cut(s)	811, 840, 1031, 1227
MboI	GATC	4 cut(s)	809, 838, 1029, 1225
MhlI	GDGCHC	1 cut(s)	1246
MluCI	AATT	9 cut(s)	71, 159, 182, 224, 246, 285, 675, 991, 1084
Mly113I	GGCGCC	1 cut(s)	196
MlyI	GAGTC	5 cut(s)	74, 356, 713, 723, 1051
MmeI	TCCRAC	2 cut(s)	957, 1070
MroXI	GAANNNNTTC	2 cut(s)	624, 1219
MseI	TTAA	6 cut(s)	189, 674, 698, 833, 855, 1178
MslI	CAYNNNNRTG	1 cut(s)	1079
MspI	CCGG	1 cut(s)	200
MspR9I	CCNGG	1 cut(s)	200
MvnI	CGCG	1 cut(s)	417
MwoI	GCNNNNNNNGC	4 cut(s)	750, 759, 912, 928
NarI	GGCGCC	1 cut(s)	196
NciI	CCSGG	1 cut(s)	200
NcoI	CCATGG	1 cut(s)	98
NdeII	GATC	4 cut(s)	809, 838, 1029, 1225
NheI	GCTAGC	1 cut(s)	817
NlaIII	CATG	5 cut(s)	102, 127, 243, 929, 971
NlaIV	GGNNCC	2 cut(s)	197, 494
NmuCI	GTSAC	1 cut(s)	518
NruI	TCGCGA	1 cut(s)	417
NspI	RCATGY	1 cut(s)	243
NspV	TTCGAA	1 cut(s)	373
PagI	TCATGA	1 cut(s)	123
PciI	ACATGT	1 cut(s)	239
PciSI	GCTCTTC	2 cut(s)	8, 615
PdmI	GAANNNNTTC	2 cut(s)	624, 1219
PfeI	GAWTC	2 cut(s)	370, 443
PkrI	GCNGC	4 cut(s)	38, 311, 924, 1000
PleI	GAGTC	5 cut(s)	74, 356, 713, 722, 1050
PluTI	GGCGCC	1 cut(s)	199
PpsI	GAGTC	5 cut(s)	74, 356, 713, 722, 1050
PscI	ACATGT	1 cut(s)	239
Psp1406I	AACGTT	1 cut(s)	1219
PspN4I	GGNNCC	2 cut(s)	197, 494
PsrI	GAACNNNNNNTAC	2 cut(s)	862, 894
RruI	TCGCGA	1 cut(s)	417
RsaI	GTAC	1 cut(s)	871
RsaNI	GTAC	1 cut(s)	870
RseI	CAYNNNNRTG	1 cut(s)	1079
SalI	GTCGAC	1 cut(s)	716
SapI	GCTCTTC	2 cut(s)	8, 615
SaqAI	TTAA	6 cut(s)	189, 674, 698, 833, 855, 1178
SatI	GCNGC	4 cut(s)	37, 310, 923, 999
Sau3AI	GATC	4 cut(s)	809, 838, 1029, 1225
ScaI	AGTACT	1 cut(s)	871
SchI	GAGTC	5 cut(s)	74, 356, 713, 723, 1051
ScrFI	CCNGG	1 cut(s)	200
SduI	GDGCHC	1 cut(s)	1246
SfaNI	GCATC	1 cut(s)	598
SfoI	GGCGCC	1 cut(s)	197
SfuI	TTCGAA	1 cut(s)	373
SmiMI	CAYNNNNRTG	1 cut(s)	1079
SmlI	CTYRAG	1 cut(s)	85
SmoI	CTYRAG	1 cut(s)	85
SpeI	ACTAGT	2 cut(s)	860, 875
Sse9I	AATT	9 cut(s)	71, 159, 182, 224, 246, 285, 675, 991, 1084
SsiI	CCGC	3 cut(s)	496, 999, 1160
SspDI	GGCGCC	1 cut(s)	195
SspI	AATATT	1 cut(s)	1153
SspMI	CTAG	7 cut(s)	276, 324, 711, 818, 861, 867, 876
StyD4I	CCNGG	1 cut(s)	198
StyI	CCWWGG	2 cut(s)	98, 275
TaaI	ACNGT	3 cut(s)	350, 767, 1185
TaiI	ACGT	1 cut(s)	1222
TaqI	TCGA	6 cut(s)	150, 373, 483, 606, 717, 812
TasI	AATT	9 cut(s)	71, 159, 182, 224, 246, 285, 675, 991, 1084
TatI	WGTACW	1 cut(s)	869
TauI	GCSGC	1 cut(s)	1001
TfiI	GAWTC	2 cut(s)	370, 443
Tru1I	TTAA	6 cut(s)	189, 674, 698, 833, 855, 1178
Tru9I	TTAA	6 cut(s)	189, 674, 698, 833, 855, 1178
TseFI	GTSAC	1 cut(s)	518
TseI	GCWGC	3 cut(s)	36, 309, 922
Tsp45I	GTSAC	1 cut(s)	518
TspDTI	ATGAA	6 cut(s)	20, 140, 453, 630, 978, 1097
TspGWI	ACGGA	3 cut(s)	725, 1064, 1091
XapI	RAATTY	4 cut(s)	71, 224, 991, 1084
XceI	RCATGY	1 cut(s)	243
XmaJI	CCTAGG	1 cut(s)	275
XmiI	GTMKAC	1 cut(s)	717
XmnI	GAANNNNTTC	2 cut(s)	624, 1219
XspI	CTAG	7 cut(s)	276, 324, 711, 818, 861, 867, 876
ZrmI	AGTACT	1 cut(s)	871

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.