Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001478

Physical Location & Seq

Genomic Coordinates Forward (+)

9466237 .. 9467076

Gene Structure 840 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G27240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGTTGAAAGAAGAGTTCAAGTGGAGCCAACTCTTAGTGATGCGCATTCATATATCACTGCTGTGAAGGAAGCATTTCATGATGAACCTACAAAATATGAAGAGTTTATTAAACTCATGAATGATATTCGTGATCATGGTGTCGATAAGGCTAGTGGCATTGCAAAGTTGACTGAACTCATTAAAGGACACCCGAGGCTGCTTCGTGGTTTAAGTTTCTTCTTTCCACAGGTTAACAGAGACATCCATCATGAGGCTAAGAGAACCATCATTCTCAAGGATAAGGCAACCATCCCTCCCGAGGCTGCTTATCGGGGTGCTAAGTCTACTTATACCAAAATAAAACAAATTGAGCCTGACTGGGAGAATTTTATGAACATGCTTAAGACAAGGTTTCGGAGCCTTGATACTCATGTAGTTGAGTCATTTCTCAAGATAATGATAATGTATGATGAAGGAAAAAAATCGGAAAAGGAGGTGCAAGAGGAGGTCGTTGATCTTCTCTATTATCATGAAGATTTGATCGACAAGTTTTTCAGATTGTTTAACATGAGAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0002119 GO:0002164 GO:0003006 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0007275 GO:0007423 GO:0007548 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009653 GO:0009791 GO:0009887 GO:0009889 GO:0009941 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0030539 GO:0031323 GO:0031326 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0035112 GO:0040011 GO:0040025 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045165 GO:0046661 GO:0048513 GO:0048569 GO:0048608 GO:0048731 GO:0048806 GO:0048808 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090596 GO:0090597 GO:0090598 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

186

Amino Acids

22.01

Weight (kDa)

7.11

Isoelectric Point (pI)

26.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAH	PF02671	32 - 75	7.6e-11	Paired amphipathic helix repeat
PAH	PF02671	138 - 180	5.3e-10	Paired amphipathic helix repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23810 AT1G24210 AT1G24220 AT1G24220 AT1G24230 AT1G24250 AT1G27240 AT1G27260 AT1G27270 AT1G27280
fragaria_vesca	FvH4_3g01921 FvH4_3g01930 FvH4_5g11770 FvH4_5g22630
malus_domestica	MD08G1247800.v1.1
pyrus_communis	pycom08g21470 pycom15g39040
rosa_chinensis	RchiOBHm_Chr5g0002831 RchiOBHm_Chr5g0002841
rosa_laevigata	RLG00000003026 RLG00000003029 RLG00000031063 RLG00000031064
rosa_multiflora	Rmu_co8115592.1_g000001 Rmu_co8158784.1_g000001 Rmu_sc0012670.1_g000008 Rmu_sc0012670.1_g000009 Rmu_sc0013603.1_g000011 Rmu_sc0013603.1_g000012
rosa_roxburghii	Rroxscaffold_1G00073010 Rroxscaffold_1G00073020 Rroxscaffold_3G00248150
rosa_rugosa	Rorug04G0400000 Rorug04G0400100
rosa_samantha	Rh5AG022900 Rh5BG025500 Rh5BG025600 Rh5CG025400 Rh5CG025500 Rh5DG024000 Rh5DG024100 Rh7AG255700 Rh7AG256500 Rh7BG250100 Rh7CG272100 Rh7CG272900 Rh7CG273000 Rh7DG262900
rosa_wichuraiana	Rw5G002120 Rw5G002140 Rw7G021870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	45
AccI	GTMKAC	1 cut(s)	326
AcsI	RAATTY	1 cut(s)	367
AfiI	CCNNNNNNNGG	2 cut(s)	253, 301
AflII	CTTAAG	1 cut(s)	383
AgsI	TTSAA	2 cut(s)	8, 20
AleI	CACNNNNGTG	1 cut(s)	62
Alw26I	GTCTC	1 cut(s)	234
Ama87I	CYCGRG	2 cut(s)	193, 299
ApeKI	GCWGC	2 cut(s)	199, 305
ApoI	RAATTY	1 cut(s)	367
Asp700I	GAANNNNTTC	1 cut(s)	75
AspLEI	GCGC	1 cut(s)	46
AvaI	CYCGRG	2 cut(s)	193, 299
BaeI	ACNNNNGTAYC	2 cut(s)	399, 432
BbvI	GCAGC	2 cut(s)	186, 292
BccI	CCATC	3 cut(s)	255, 275, 299
BclI	TGATCA	1 cut(s)	133
BcoDI	GTCTC	1 cut(s)	234
BfaI	CTAG	1 cut(s)	153
BfrI	CTTAAG	1 cut(s)	383
BisI	GCNGC	2 cut(s)	200, 306
BlsI	GCNGC	2 cut(s)	201, 307
BmeT110I	CYCGRG	2 cut(s)	193, 299
BmiI	GGNNCC	2 cut(s)	27, 401
BmrI	ACTGGG	1 cut(s)	370
BmsI	GCATC	1 cut(s)	31
BmuI	ACTGGG	1 cut(s)	370
BpuEI	CTTGAG	2 cut(s)	260, 416
BsaJI	CCNNGG	2 cut(s)	194, 300
BsaXI	ACNNNNNCTCC	2 cut(s)	280, 310
Bsc4I	CCNNNNNNNGG	2 cut(s)	253, 301
Bse1I	ACTGG	1 cut(s)	365
Bse3DI	GCAATG	1 cut(s)	159
BseDI	CCNNGG	2 cut(s)	194, 300
BseGI	GGATG	2 cut(s)	243, 291
BseLI	CCNNNNNNNGG	2 cut(s)	253, 301
BseMI	GCAATG	1 cut(s)	159
BseNI	ACTGG	1 cut(s)	365
BseRI	GAGGAG	1 cut(s)	500
BseXI	GCAGC	2 cut(s)	186, 292
BsiHKCI	CYCGRG	2 cut(s)	193, 299
BslI	CCNNNNNNNGG	2 cut(s)	253, 301
BsmAI	GTCTC	1 cut(s)	234
BsmI	GAATGC	1 cut(s)	46
BsoBI	CYCGRG	2 cut(s)	193, 299
Bsp143I	GATC	3 cut(s)	133, 496, 522
BspHI	TCATGA	4 cut(s)	79, 117, 250, 511
BspLI	GGNNCC	2 cut(s)	27, 401
BspTI	CTTAAG	1 cut(s)	383
BsrDI	GCAATG	1 cut(s)	159
BsrI	ACTGG	1 cut(s)	365
BssECI	CCNNGG	2 cut(s)	194, 300
BssMI	GATC	3 cut(s)	133, 496, 522
Bst6I	CTCTTC	2 cut(s)	7, 96
BstAFI	CTTAAG	1 cut(s)	383
BstDEI	CTNAG	3 cut(s)	35, 258, 321
BstF5I	GGATG	2 cut(s)	243, 291
BstHHI	GCGC	1 cut(s)	46
BstKTI	GATC	3 cut(s)	136, 499, 525
BstMAI	GTCTC	1 cut(s)	234
BstMBI	GATC	3 cut(s)	133, 496, 522
BstNSI	RCATGY	1 cut(s)	382
BstV1I	GCAGC	2 cut(s)	186, 292
BtsCI	GGATG	2 cut(s)	243, 291
BtsI	GCAGTG	1 cut(s)	57
BtsIMutI	CAGTG	1 cut(s)	57
CciI	TCATGA	4 cut(s)	79, 117, 250, 511
CfoI	GCGC	1 cut(s)	46
CviAII	CATG	8 cut(s)	80, 118, 137, 251, 379, 413, 512, 550
CviJI	RGCY	7 cut(s)	28, 152, 199, 257, 305, 355, 402
CviKI_1	RGCY	7 cut(s)	28, 152, 199, 257, 305, 355, 402
DdeI	CTNAG	3 cut(s)	35, 258, 321
DpnI	GATC	3 cut(s)	135, 498, 524
DpnII	GATC	3 cut(s)	133, 496, 522
Eam1104I	CTCTTC	2 cut(s)	7, 96
EarI	CTCTTC	2 cut(s)	7, 96
Eco88I	CYCGRG	2 cut(s)	193, 299
FaeI	CATG	8 cut(s)	83, 121, 140, 254, 382, 416, 515, 553
FatI	CATG	8 cut(s)	79, 117, 136, 250, 378, 412, 511, 549
FbaI	TGATCA	1 cut(s)	133
FblI	GTMKAC	1 cut(s)	326
Fnu4HI	GCNGC	2 cut(s)	200, 306
FokI	GGATG	2 cut(s)	230, 278
Fsp4HI	GCNGC	2 cut(s)	200, 306
FspAI	RTGCGCAY	1 cut(s)	45
FspBI	CTAG	1 cut(s)	153
FspI	TGCGCA	1 cut(s)	45
GlaI	GCGC	1 cut(s)	45
GluI	GCNGC	2 cut(s)	200, 306
HhaI	GCGC	1 cut(s)	46
Hin1II	CATG	8 cut(s)	83, 121, 140, 254, 382, 416, 515, 553
Hin6I	GCGC	1 cut(s)	44
HinP1I	GCGC	1 cut(s)	44
HincII	GTYRAC	2 cut(s)	171, 235
HindII	GTYRAC	2 cut(s)	171, 235
HinfI	GANTC	1 cut(s)	422
HpaI	GTTAAC	1 cut(s)	235
Hpy166II	GTNNAC	3 cut(s)	171, 235, 327
Hpy188I	TCNGA	3 cut(s)	399, 469, 539
Hpy188III	TCNNGA	7 cut(s)	80, 118, 131, 251, 299, 433, 512
Hpy8I	GTNNAC	3 cut(s)	171, 235, 327
HpyAV	CCTTC	2 cut(s)	61, 449
HpyCH4V	TGCA	2 cut(s)	164, 481
HpyF3I	CTNAG	3 cut(s)	35, 258, 321
Hsp92II	CATG	8 cut(s)	83, 121, 140, 254, 382, 416, 515, 553
HspAI	GCGC	1 cut(s)	44
Ksp22I	TGATCA	1 cut(s)	133
KspAI	GTTAAC	1 cut(s)	235
Kzo9I	GATC	3 cut(s)	133, 496, 522
LmnI	GCTCC	2 cut(s)	25, 399
LpnPI	CCDG	3 cut(s)	215, 346, 369
Lsp1109I	GCAGC	2 cut(s)	186, 292
LweI	GCATC	1 cut(s)	31
MaeI	CTAG	1 cut(s)	153
MalI	GATC	3 cut(s)	135, 498, 524
MboI	GATC	3 cut(s)	133, 496, 522
MboII	GAAGA	5 cut(s)	24, 113, 211, 491, 527
MluCI	AATT	2 cut(s)	348, 367
MlyI	GAGTC	1 cut(s)	431
MnlI	CCTC	7 cut(s)	189, 247, 295, 306, 469, 478, 481
MroXI	GAANNNNTTC	1 cut(s)	75
MseI	TTAA	6 cut(s)	111, 183, 212, 234, 384, 546
MslI	CAYNNNNRTG	1 cut(s)	62
MspCI	CTTAAG	1 cut(s)	383
Mva1269I	GAATGC	1 cut(s)	46
NdeII	GATC	3 cut(s)	133, 496, 522
NlaIII	CATG	8 cut(s)	83, 121, 140, 254, 382, 416, 515, 553
NlaIV	GGNNCC	2 cut(s)	27, 401
NsbI	TGCGCA	1 cut(s)	45
NspI	RCATGY	1 cut(s)	382
OliI	CACNNNNGTG	1 cut(s)	62
PagI	TCATGA	4 cut(s)	79, 117, 250, 511
PctI	GAATGC	1 cut(s)	46
PdmI	GAANNNNTTC	1 cut(s)	75
PkrI	GCNGC	2 cut(s)	201, 307
PleI	GAGTC	1 cut(s)	430
PpsI	GAGTC	1 cut(s)	430
PspN4I	GGNNCC	2 cut(s)	27, 401
RseI	CAYNNNNRTG	1 cut(s)	62
SaqAI	TTAA	6 cut(s)	111, 183, 212, 234, 384, 546
SatI	GCNGC	2 cut(s)	200, 306
Sau3AI	GATC	3 cut(s)	133, 496, 522
SchI	GAGTC	1 cut(s)	431
SetI	ASST	5 cut(s)	91, 234, 395, 480, 492
SfaNI	GCATC	1 cut(s)	31
SmiMI	CAYNNNNRTG	1 cut(s)	62
SmlI	CTYRAG	3 cut(s)	275, 383, 431
SmoI	CTYRAG	3 cut(s)	275, 383, 431
Sse9I	AATT	2 cut(s)	348, 367
SspMI	CTAG	1 cut(s)	153
TaqI	TCGA	2 cut(s)	144, 525
TasI	AATT	2 cut(s)	348, 367
Tru1I	TTAA	6 cut(s)	111, 183, 212, 234, 384, 546
Tru9I	TTAA	6 cut(s)	111, 183, 212, 234, 384, 546
TscAI	CASTG	1 cut(s)	64
TseI	GCWGC	2 cut(s)	199, 305
TspDTI	ATGAA	8 cut(s)	39, 68, 99, 114, 134, 389, 468, 528
TspRI	CASTG	1 cut(s)	64
Vha464I	CTTAAG	1 cut(s)	383
XapI	RAATTY	1 cut(s)	367
XceI	RCATGY	1 cut(s)	382
XmiI	GTMKAC	1 cut(s)	326
XmnI	GAANNNNTTC	1 cut(s)	75
XspI	CTAG	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.