Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0001478

Physical Location & Seq

Genomic Coordinates Reverse (-)

20933973 .. 20935061

Gene Structure 1089 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g21470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGAAACCAACAAAAAGCGAATCGTTGGCATATCTAAGGGAGGTGAAGGAGGTATTTGCAAAGCAAGACAAGATCGAAAACTACCACCACTTTGTTCAGCTCCTCCAAGACTTCCGGACCCAAAAAACTGACACCGAGGCTCTCACTCGCGCCGTCAAACAACTCTTCCAAGGCCACCCTCATCTACTCTTAGGTTTCAATGCCTTCTTGCCCAAGGAACATCAAATTACCTCTCAACCCCGCCCTCATCCTCCTCTTGCCTTCCGAAAAGCCATTGATTTCGTCAACAAGGTCAAGACCAGACTGCTAGGCGAAGGCCGAGATGATGATATTGATGTTTATGAGTCTTTTATAAACGTTATGGCTAGTTACAGAACGGTCAGCCGGTCATCCAAACGAAAACGAAACGCTAGTTGTGGTACTAGTAGTTATGAATCCAGCGACGATGACCGCGAGGCTAGTGAAGTAATTTACCACAAGGTTGCAGCTCTTTTCAAAGACCACCCAGATTTACTGGAAGAACTCACTCGCTTTCTGCCCCCTCTTCGTCAAGATTATCACAGTTACCCTGGACCAACAACAGCGGTAAAAGATAAGGGTAACTGCACGCCAAGCTATTGCTTGCTGCCAAAGAATTCCTCATCAACACATTATGATTCCAGAAGAAGAGGACTTGAGTCTCAAGTACTCAACGACAGTTGCGTACTATGCGTTACTACTACTACTTCCACTTCTGTGCCCAAATCAGAGCACGAACAAAGCCTTTTTCGCTATGAAGACGACATGTATGAGCTTGACATGTTTTTGCAGACGGTGAAATCAACCAGTAAACGTGCAGAACAGTTACTGGACAAGATCAACAACGAAACAGTTCATCAAATCCGTCTCGAAGATCACTTCACAGCGATGAATCTGAGGTGCATTGAACGATTATACGATGACATGGGGCTTGAGGTGCTAGATGTGTTAAGGGAAAATGCTGCGGTGGCTTTGCCGGTTATAATAGCCCGGTTGAAGCAAAAGTGGGAAACATGTCCCGATTTTAATCGGTTTTGGGCTCAACAATCTCAAACGTTGTCAGCAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAH Sin3_corepress

Protein Analysis

363

Amino Acids

41.79

Weight (kDa)

6.68

Isoelectric Point (pI)

49.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HHD_RTEL1	PF23116	8 - 75	1e-05	RTEL1, HHD domain
PAH	PF02671	26 - 70	5.2e-13	Paired amphipathic helix repeat
PAH	PF02671	112 - 179	3.6e-08	Paired amphipathic helix repeat
Sin3_corepress	PF08295	201 - 290	3.1e-17	Sin3 family co-repressor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23810 AT1G24210 AT1G24220 AT1G24220 AT1G24230 AT1G24250 AT1G27240 AT1G27260 AT1G27270 AT1G27280
fragaria_vesca	FvH4_3g01921 FvH4_3g01930 FvH4_5g11770 FvH4_5g22630
malus_domestica	MD08G1247800.v1.1
pyrus_communis	pycom08g21470 pycom15g39040
rosa_chinensis	RchiOBHm_Chr5g0002831 RchiOBHm_Chr5g0002841
rosa_laevigata	RLG00000003026 RLG00000003029 RLG00000031063 RLG00000031064
rosa_multiflora	Rmu_co8115592.1_g000001 Rmu_co8158784.1_g000001 Rmu_sc0012670.1_g000008 Rmu_sc0012670.1_g000009 Rmu_sc0013603.1_g000011 Rmu_sc0013603.1_g000012
rosa_roxburghii	Rroxscaffold_1G00073010 Rroxscaffold_1G00073020 Rroxscaffold_3G00248150
rosa_rugosa	Rorug04G0400000 Rorug04G0400100
rosa_samantha	Rh5AG022900 Rh5BG025500 Rh5BG025600 Rh5CG025400 Rh5CG025500 Rh5DG024000 Rh5DG024100 Rh7AG255700 Rh7AG256500 Rh7BG250100 Rh7CG272100 Rh7CG272900 Rh7CG273000 Rh7DG262900
rosa_wichuraiana	Rw5G002120 Rw5G002140 Rw7G021870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	353, 1001
AccII	CGCG	2 cut(s)	150, 453
AccIII	TCCGGA	1 cut(s)	114
AciI	CCGC	4 cut(s)	241, 451, 584, 983
AclI	AACGTT	2 cut(s)	357, 1073
AcsI	RAATTY	1 cut(s)	634
AfaI	GTAC	3 cut(s)	421, 687, 705
AflIII	ACRYGT	3 cut(s)	783, 798, 1031
AgsI	TTSAA	4 cut(s)	199, 496, 926, 1015
AhlI	ACTAGT	1 cut(s)	422
AjnI	CCWGG	1 cut(s)	568
AleI	CACNNNNGTG	1 cut(s)	734
AluBI	AGCT	4 cut(s)	100, 488, 615, 793
AluI	AGCT	4 cut(s)	100, 488, 615, 793
Alw21I	GWGCWC	1 cut(s)	753
Alw26I	GTCTC	2 cut(s)	684, 890
AlwNI	CAGNNNCTG	1 cut(s)	847
Aor13HI	TCCGGA	1 cut(s)	114
AoxI	GGCC	2 cut(s)	172, 316
ApeKI	GCWGC	3 cut(s)	485, 625, 980
ApoI	RAATTY	1 cut(s)	634
Asp700I	GAANNNNTTC	1 cut(s)	870
AspLEI	GCGC	1 cut(s)	152
AspS9I	GGNCC	2 cut(s)	117, 572
AsuC2I	CCSGG	1 cut(s)	1009
AsuHPI	GGTGA	2 cut(s)	55, 826
AvaII	GGWCC	2 cut(s)	117, 572
BaeGI	GKGCMC	1 cut(s)	741
BanII	GRGCYC	1 cut(s)	1060
BbsI	GAAGAC	1 cut(s)	783
Bbv12I	GWGCWC	1 cut(s)	753
BbvI	GCAGC	3 cut(s)	497, 612, 967
BceAI	ACGGC	1 cut(s)	137
BciT130I	CCWGG	1 cut(s)	570
BcnI	CCSGG	1 cut(s)	1009
BcoDI	GTCTC	2 cut(s)	684, 890
BcuI	ACTAGT	1 cut(s)	422
BfaI	CTAG	6 cut(s)	308, 366, 411, 423, 459, 959
BisI	GCNGC	3 cut(s)	486, 626, 981
BlsI	GCNGC	3 cut(s)	487, 627, 982
BmcAI	AGTACT	1 cut(s)	687
Bme1390I	CCNGG	2 cut(s)	570, 1009
Bme18I	GGWCC	2 cut(s)	117, 572
BmgT120I	GGNCC	2 cut(s)	117, 572
BmiI	GGNNCC	1 cut(s)	119
BmrFI	CCNGG	2 cut(s)	570, 1009
BoxI	GACNNNNGTC	1 cut(s)	676
BpiI	GAAGAC	1 cut(s)	783
BpuEI	CTTGAG	3 cut(s)	666, 695, 971
BpuMI	CCSGG	1 cut(s)	1009
BsaBI	GATNNNNATC	1 cut(s)	1044
BsaJI	CCNNGG	4 cut(s)	135, 169, 213, 568
BsaWI	WCCGGW	1 cut(s)	114
Bse118I	RCCGGY	2 cut(s)	384, 994
Bse1I	ACTGG	3 cut(s)	519, 825, 852
Bse8I	GATNNNNATC	1 cut(s)	1044
BseAI	TCCGGA	1 cut(s)	114
BseBI	CCWGG	1 cut(s)	570
BseDI	CCNNGG	4 cut(s)	135, 169, 213, 568
BseGI	GGATG	2 cut(s)	247, 389
BseJI	GATNNNNATC	1 cut(s)	1044
BseMII	CTCAG	1 cut(s)	905
BseNI	ACTGG	3 cut(s)	519, 825, 852
BseRI	GAGGAG	2 cut(s)	92, 243
BseSI	GKGCMC	1 cut(s)	741
BseXI	GCAGC	3 cut(s)	497, 612, 967
BsgI	GTGCAG	2 cut(s)	589, 855
Bsh1236I	CGCG	2 cut(s)	150, 453
BshFI	GGCC	2 cut(s)	174, 318
BsiHKAI	GWGCWC	1 cut(s)	753
BsiSI	CCGG	4 cut(s)	115, 385, 995, 1009
BslFI	GGGAC	1 cut(s)	1020
BsmAI	GTCTC	2 cut(s)	684, 890
BsmBI	CGTCTC	1 cut(s)	890
BsmFI	GGGAC	1 cut(s)	1020
BsnI	GGCC	2 cut(s)	174, 318
Bsp1286I	GDGCHC	3 cut(s)	741, 753, 1060
Bsp13I	TCCGGA	1 cut(s)	114
Bsp143I	GATC	3 cut(s)	72, 855, 892
BspACI	CCGC	4 cut(s)	241, 451, 584, 983
BspANI	GGCC	2 cut(s)	174, 318
BspCNI	CTCAG	1 cut(s)	906
BspEI	TCCGGA	1 cut(s)	114
BspFNI	CGCG	2 cut(s)	150, 453
BspLI	GGNNCC	1 cut(s)	119
BsrFI	RCCGGY	2 cut(s)	384, 994
BsrI	ACTGG	3 cut(s)	519, 825, 852
BssAI	RCCGGY	2 cut(s)	384, 994
BssECI	CCNNGG	4 cut(s)	135, 169, 213, 568
BssMI	GATC	3 cut(s)	72, 855, 892
BssT1I	CCWWGG	2 cut(s)	169, 213
Bst2UI	CCWGG	1 cut(s)	570
Bst4CI	ACNGT	6 cut(s)	379, 563, 698, 814, 843, 871
Bst6I	CTCTTC	3 cut(s)	170, 549, 661
BstC8I	GCNNGC	2 cut(s)	608, 623
BstDEI	CTNAG	3 cut(s)	35, 190, 914
BstF5I	GGATG	2 cut(s)	247, 389
BstFNI	CGCG	2 cut(s)	150, 453
BstHHI	GCGC	1 cut(s)	152
BstKTI	GATC	3 cut(s)	75, 858, 895
BstMAI	GTCTC	2 cut(s)	684, 890
BstMBI	GATC	3 cut(s)	72, 855, 892
BstMWI	GCNNNNNNNGC	5 cut(s)	612, 708, 768, 955, 986
BstNI	CCWGG	1 cut(s)	570
BstNSI	RCATGY	3 cut(s)	787, 802, 1035
BstPAI	GACNNNNGTC	1 cut(s)	676
BstSCI	CCNGG	2 cut(s)	568, 1007
BstSLI	GKGCMC	1 cut(s)	741
BstUI	CGCG	2 cut(s)	150, 453
BstV1I	GCAGC	3 cut(s)	497, 612, 967
BstV2I	GAAGAC	1 cut(s)	783
BsuRI	GGCC	2 cut(s)	174, 318
BtgZI	GCGATG	1 cut(s)	920
BtsCI	GGATG	2 cut(s)	247, 389
Cac8I	GCNNGC	2 cut(s)	608, 623
CaiI	CAGNNNCTG	1 cut(s)	847
CfoI	GCGC	1 cut(s)	152
Cfr10I	RCCGGY	2 cut(s)	384, 994
Cfr13I	GGNCC	2 cut(s)	117, 572
Csp6I	GTAC	3 cut(s)	420, 686, 704
CviAII	CATG	4 cut(s)	784, 799, 943, 1032
CviQI	GTAC	3 cut(s)	420, 686, 704
DdeI	CTNAG	3 cut(s)	35, 190, 914
DpnI	GATC	3 cut(s)	74, 857, 894
DpnII	GATC	3 cut(s)	72, 855, 892
Eam1104I	CTCTTC	3 cut(s)	170, 549, 661
EarI	CTCTTC	3 cut(s)	170, 549, 661
Eco130I	CCWWGG	2 cut(s)	169, 213
Eco24I	GRGCYC	1 cut(s)	1060
Eco47I	GGWCC	2 cut(s)	117, 572
EcoRI	GAATTC	1 cut(s)	634
EcoRII	CCWGG	1 cut(s)	568
EcoT14I	CCWWGG	2 cut(s)	169, 213
EcoT38I	GRGCYC	1 cut(s)	1060
ErhI	CCWWGG	2 cut(s)	169, 213
Esp3I	CGTCTC	1 cut(s)	890
FaeI	CATG	4 cut(s)	787, 802, 946, 1035
FaqI	GGGAC	1 cut(s)	1020
FatI	CATG	4 cut(s)	783, 798, 942, 1031
FauI	CCCGC	1 cut(s)	248
Fnu4HI	GCNGC	3 cut(s)	486, 626, 981
FokI	GGATG	2 cut(s)	234, 376
FriOI	GRGCYC	1 cut(s)	1060
Fsp4HI	GCNGC	3 cut(s)	486, 626, 981
FspBI	CTAG	6 cut(s)	308, 366, 411, 423, 459, 959
GlaI	GCGC	1 cut(s)	151
GluI	GCNGC	3 cut(s)	486, 626, 981
HaeIII	GGCC	2 cut(s)	174, 318
HapII	CCGG	4 cut(s)	115, 385, 995, 1009
HhaI	GCGC	1 cut(s)	152
Hin1II	CATG	4 cut(s)	787, 802, 946, 1035
Hin6I	GCGC	1 cut(s)	150
HinP1I	GCGC	1 cut(s)	150
HincII	GTYRAC	1 cut(s)	286
HindII	GTYRAC	1 cut(s)	286
HinfI	GANTC	6 cut(s)	20, 344, 434, 656, 677, 910
HpaII	CCGG	4 cut(s)	115, 385, 995, 1009
HphI	GGTGA	2 cut(s)	55, 826
Hpy166II	GTNNAC	2 cut(s)	286, 830
Hpy188I	TCNGA	3 cut(s)	266, 748, 915
Hpy188III	TCNNGA	6 cut(s)	115, 295, 551, 660, 887, 1037
Hpy8I	GTNNAC	2 cut(s)	286, 830
Hpy99I	CGWCG	1 cut(s)	446
HpyAV	CCTTC	4 cut(s)	40, 214, 271, 308
HpyCH4III	ACNGT	6 cut(s)	379, 563, 698, 814, 843, 871
HpyCH4IV	ACGT	3 cut(s)	357, 832, 1073
HpyCH4V	TGCA	6 cut(s)	59, 485, 606, 808, 836, 921
HpyF10VI	GCNNNNNNNGC	5 cut(s)	612, 708, 768, 955, 986
HpyF3I	CTNAG	3 cut(s)	35, 190, 914
HpySE526I	ACGT	3 cut(s)	357, 832, 1073
Hsp92II	CATG	4 cut(s)	787, 802, 946, 1035
HspAI	GCGC	1 cut(s)	150
Kpn2I	TCCGGA	1 cut(s)	114
Kzo9I	GATC	3 cut(s)	72, 855, 892
LmnI	GCTCC	1 cut(s)	105
Lsp1109I	GCAGC	3 cut(s)	497, 612, 967
MaeI	CTAG	6 cut(s)	308, 366, 411, 423, 459, 959
MaeII	ACGT	3 cut(s)	357, 832, 1073
MaeIII	GTNAC	5 cut(s)	368, 563, 599, 712, 843
MalI	GATC	3 cut(s)	74, 857, 894
MboI	GATC	3 cut(s)	72, 855, 892
MboII	GAAGA	7 cut(s)	157, 530, 536, 675, 678, 788, 902
MhlI	GDGCHC	3 cut(s)	741, 753, 1060
MluCI	AATT	4 cut(s)	225, 468, 634, 1084
MlyI	GAGTC	2 cut(s)	353, 686
MroI	TCCGGA	1 cut(s)	114
MroXI	GAANNNNTTC	1 cut(s)	870
MseI	TTAA	3 cut(s)	968, 1044, 1087
MslI	CAYNNNNRTG	2 cut(s)	734, 905
MspA1I	CMGCKG	1 cut(s)	584
MspI	CCGG	4 cut(s)	115, 385, 995, 1009
MspR9I	CCNGG	2 cut(s)	570, 1009
MvaI	CCWGG	1 cut(s)	570
MvnI	CGCG	2 cut(s)	150, 453
MwoI	GCNNNNNNNGC	5 cut(s)	612, 708, 768, 955, 986
NciI	CCSGG	1 cut(s)	1009
NdeII	GATC	3 cut(s)	72, 855, 892
NlaIII	CATG	4 cut(s)	787, 802, 946, 1035
NlaIV	GGNNCC	1 cut(s)	119
NmeAIII	GCCGAG	1 cut(s)	344
NspI	RCATGY	3 cut(s)	787, 802, 1035
OliI	CACNNNNGTG	1 cut(s)	734
PciI	ACATGT	3 cut(s)	783, 798, 1031
PcsI	WCGNNNNNNNCGW	2 cut(s)	450, 699
PdmI	GAANNNNTTC	1 cut(s)	870
PfeI	GAWTC	4 cut(s)	20, 434, 656, 910
PkrI	GCNGC	3 cut(s)	487, 627, 982
PleI	GAGTC	2 cut(s)	352, 685
PpsI	GAGTC	2 cut(s)	352, 685
PscI	ACATGT	3 cut(s)	783, 798, 1031
PshAI	GACNNNNGTC	1 cut(s)	676
PsiI	TTATAA	2 cut(s)	353, 1001
Psp1406I	AACGTT	2 cut(s)	357, 1073
Psp6I	CCWGG	1 cut(s)	568
PspGI	CCWGG	1 cut(s)	568
PspN4I	GGNNCC	1 cut(s)	119
PspPI	GGNCC	2 cut(s)	117, 572
PstNI	CAGNNNCTG	1 cut(s)	847
RsaI	GTAC	3 cut(s)	421, 687, 705
RsaNI	GTAC	3 cut(s)	420, 686, 704
RseI	CAYNNNNRTG	2 cut(s)	734, 905
SaqAI	TTAA	3 cut(s)	968, 1044, 1087
SatI	GCNGC	3 cut(s)	486, 626, 981
Sau3AI	GATC	3 cut(s)	72, 855, 892
Sau96I	GGNCC	2 cut(s)	117, 572
ScaI	AGTACT	1 cut(s)	687
SchI	GAGTC	2 cut(s)	353, 686
ScrFI	CCNGG	2 cut(s)	570, 1009
SduI	GDGCHC	3 cut(s)	741, 753, 1060
SinI	GGWCC	2 cut(s)	117, 572
SmiMI	CAYNNNNRTG	2 cut(s)	734, 905
SmlI	CTYRAG	3 cut(s)	674, 681, 950
SmoI	CTYRAG	3 cut(s)	674, 681, 950
SpeI	ACTAGT	1 cut(s)	422
Sse9I	AATT	4 cut(s)	225, 468, 634, 1084
SsiI	CCGC	4 cut(s)	241, 451, 584, 983
SspMI	CTAG	6 cut(s)	308, 366, 411, 423, 459, 959
StyD4I	CCNGG	2 cut(s)	568, 1007
StyI	CCWWGG	2 cut(s)	169, 213
TaaI	ACNGT	6 cut(s)	379, 563, 698, 814, 843, 871
TaiI	ACGT	3 cut(s)	360, 835, 1076
TaqI	TCGA	2 cut(s)	75, 888
TasI	AATT	4 cut(s)	225, 468, 634, 1084
TatI	WGTACW	1 cut(s)	685
TfiI	GAWTC	4 cut(s)	20, 434, 656, 910
Tru1I	TTAA	3 cut(s)	968, 1044, 1087
Tru9I	TTAA	3 cut(s)	968, 1044, 1087
TseI	GCWGC	3 cut(s)	485, 625, 980
TspDTI	ATGAA	5 cut(s)	17, 447, 789, 863, 923
TspGWI	ACGGA	1 cut(s)	872
VpaK11BI	GGWCC	2 cut(s)	117, 572
XapI	RAATTY	1 cut(s)	634
XceI	RCATGY	3 cut(s)	787, 802, 1035
XmnI	GAANNNNTTC	1 cut(s)	870
XspI	CTAG	6 cut(s)	308, 366, 411, 423, 459, 959
ZrmI	AGTACT	1 cut(s)	687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.