Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001478

Physical Location & Seq

Genomic Coordinates Forward (+)

43325598 .. 43326781

Gene Structure 1184 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003029

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGCTCGGCTGGCTAGGTGATCTCAGTCAGGCTGTATCACTCCTTCAGCTGCTTCTTGTTCAAGAGGAATATGCAAAACCCGATCTACTCGAGAATATTGAAAACAATAGTATTAGTGCATCAATTTGTATCGAAGATCACTTGACGGTTCTCAATCTGAGGTGCATTGAGAGAGTGTATGGTAAACAGGGGCTTGAAGTGGTGGATGTGTTGAGGGAAAATGCTCAAGTGGCTCTGCCTGTTATATTAGTTCGACTGAAGCAAAAACAAGAAGAGCGGGAACTATGTCGCTCTGATTTTAGTCTAGTTTGGGCTCAAGTATATGCCAAGAACCTTAACTGTCAAGCTAATGATGATCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000785 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0098732 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

121

Amino Acids

13.68

Weight (kDa)

4.73

Isoelectric Point (pI)

52.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23810 AT1G24210 AT1G24220 AT1G24220 AT1G24230 AT1G24250 AT1G27240 AT1G27260 AT1G27270 AT1G27280
fragaria_vesca	FvH4_3g01921 FvH4_3g01930 FvH4_5g11770 FvH4_5g22630
malus_domestica	MD08G1247800.v1.1
pyrus_communis	pycom08g21470 pycom15g39040
rosa_chinensis	RchiOBHm_Chr5g0002831 RchiOBHm_Chr5g0002841
rosa_laevigata	RLG00000003026 RLG00000003029 RLG00000031063 RLG00000031064
rosa_multiflora	Rmu_co8115592.1_g000001 Rmu_co8158784.1_g000001 Rmu_sc0012670.1_g000008 Rmu_sc0012670.1_g000009 Rmu_sc0013603.1_g000011 Rmu_sc0013603.1_g000012
rosa_roxburghii	Rroxscaffold_1G00073010 Rroxscaffold_1G00073020 Rroxscaffold_3G00248150
rosa_rugosa	Rorug04G0400000 Rorug04G0400100
rosa_samantha	Rh5AG022900 Rh5BG025500 Rh5BG025600 Rh5CG025400 Rh5CG025500 Rh5DG024000 Rh5DG024100 Rh7AG255700 Rh7AG256500 Rh7BG250100 Rh7CG272100 Rh7CG272900 Rh7CG273000 Rh7DG262900
rosa_wichuraiana	Rw5G002120 Rw5G002140 Rw7G021870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	277
AciI	CCGC	1 cut(s)	277
AcuI	CTGAAG	2 cut(s)	29, 278
AgsI	TTSAA	3 cut(s)	62, 101, 197
AluBI	AGCT	2 cut(s)	49, 347
AluI	AGCT	2 cut(s)	49, 347
Ama87I	CYCGRG	1 cut(s)	89
ApeKI	GCWGC	1 cut(s)	49
AsuHPI	GGTGA	1 cut(s)	29
AvaI	CYCGRG	1 cut(s)	89
BanII	GRGCYC	1 cut(s)	316
BarI	GAAGNNNNNNTAC	2 cut(s)	27, 59
BbvI	GCAGC	1 cut(s)	36
BfaI	CTAG	2 cut(s)	14, 305
BisI	GCNGC	1 cut(s)	50
BlsI	GCNGC	1 cut(s)	51
BmeT110I	CYCGRG	1 cut(s)	89
BmsI	GCATC	1 cut(s)	128
BpuEI	CTTGAG	2 cut(s)	210, 300
BseGI	GGATG	1 cut(s)	211
BseMII	CTCAG	2 cut(s)	37, 149
BseXI	GCAGC	1 cut(s)	36
BsiHKCI	CYCGRG	1 cut(s)	89
BsoBI	CYCGRG	1 cut(s)	89
Bsp1286I	GDGCHC	1 cut(s)	316
Bsp143I	GATC	4 cut(s)	19, 82, 136, 355
BspACI	CCGC	1 cut(s)	277
BspCNI	CTCAG	2 cut(s)	36, 150
BspQI	GCTCTTC	1 cut(s)	267
BsrBI	CCGCTC	1 cut(s)	277
BssMI	GATC	4 cut(s)	19, 82, 136, 355
Bst4CI	ACNGT	2 cut(s)	148, 341
Bst6I	CTCTTC	1 cut(s)	267
BstC8I	GCNNGC	1 cut(s)	11
BstDEI	CTNAG	2 cut(s)	23, 158
BstF5I	GGATG	1 cut(s)	211
BstKTI	GATC	4 cut(s)	22, 85, 139, 358
BstMBI	GATC	4 cut(s)	19, 82, 136, 355
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 230
BstV1I	GCAGC	1 cut(s)	36
BtsCI	GGATG	1 cut(s)	211
Cac8I	GCNNGC	1 cut(s)	11
CviJI	RGCY	8 cut(s)	9, 13, 32, 49, 193, 233, 314, 347
CviKI_1	RGCY	8 cut(s)	9, 13, 32, 49, 193, 233, 314, 347
DdeI	CTNAG	2 cut(s)	23, 158
DpnI	GATC	4 cut(s)	21, 84, 138, 357
DpnII	GATC	4 cut(s)	19, 82, 136, 355
Eam1104I	CTCTTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	267
Eco24I	GRGCYC	1 cut(s)	316
Eco57I	CTGAAG	2 cut(s)	29, 278
Eco88I	CYCGRG	1 cut(s)	89
EcoT38I	GRGCYC	1 cut(s)	316
FaiI	YATR	6 cut(s)	72, 180, 245, 286, 322, 324
FauI	CCCGC	1 cut(s)	270
Fnu4HI	GCNGC	1 cut(s)	50
FokI	GGATG	1 cut(s)	218
FriOI	GRGCYC	1 cut(s)	316
Fsp4HI	GCNGC	1 cut(s)	50
FspBI	CTAG	2 cut(s)	14, 305
GluI	GCNGC	1 cut(s)	50
HphI	GGTGA	1 cut(s)	29
Hpy166II	GTNNAC	1 cut(s)	185
Hpy188I	TCNGA	2 cut(s)	159, 295
Hpy188III	TCNNGA	2 cut(s)	62, 91
Hpy8I	GTNNAC	1 cut(s)	185
HpyAV	CCTTC	1 cut(s)	53
HpyCH4III	ACNGT	2 cut(s)	148, 341
HpyCH4V	TGCA	3 cut(s)	74, 119, 165
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 230
HpyF3I	CTNAG	2 cut(s)	23, 158
Kzo9I	GATC	4 cut(s)	19, 82, 136, 355
LguI	GCTCTTC	1 cut(s)	267
LpnPI	CCDG	3 cut(s)	14, 173, 252
Lsp1109I	GCAGC	1 cut(s)	36
LweI	GCATC	1 cut(s)	128
MaeI	CTAG	2 cut(s)	14, 305
MalI	GATC	4 cut(s)	21, 84, 138, 357
MbiI	CCGCTC	1 cut(s)	277
MboI	GATC	4 cut(s)	19, 82, 136, 355
MboII	GAAGA	2 cut(s)	146, 284
MhlI	GDGCHC	1 cut(s)	316
MluCI	AATT	1 cut(s)	123
MnlI	CCTC	3 cut(s)	58, 153, 207
MseI	TTAA	2 cut(s)	336, 361
MspA1I	CMGCKG	1 cut(s)	49
MwoI	GCNNNNNNNGC	2 cut(s)	10, 230
NdeII	GATC	4 cut(s)	19, 82, 136, 355
PaeR7I	CTCGAG	1 cut(s)	89
PciSI	GCTCTTC	1 cut(s)	267
PkrI	GCNGC	1 cut(s)	51
PvuII	CAGCTG	1 cut(s)	49
SapI	GCTCTTC	1 cut(s)	267
SaqAI	TTAA	2 cut(s)	336, 361
SatI	GCNGC	1 cut(s)	50
Sau3AI	GATC	4 cut(s)	19, 82, 136, 355
SduI	GDGCHC	1 cut(s)	316
SetI	ASST	5 cut(s)	19, 51, 164, 336, 349
SfaNI	GCATC	1 cut(s)	128
Sfr274I	CTCGAG	1 cut(s)	89
SlaI	CTCGAG	1 cut(s)	89
SmlI	CTYRAG	3 cut(s)	89, 225, 315
SmoI	CTYRAG	3 cut(s)	89, 225, 315
Sse9I	AATT	1 cut(s)	123
SsiI	CCGC	1 cut(s)	277
SspI	AATATT	1 cut(s)	97
SspMI	CTAG	2 cut(s)	14, 305
TaaI	ACNGT	2 cut(s)	148, 341
TaqI	TCGA	3 cut(s)	90, 132, 253
TasI	AATT	1 cut(s)	123
Tru1I	TTAA	2 cut(s)	336, 361
Tru9I	TTAA	2 cut(s)	336, 361
TseI	GCWGC	1 cut(s)	49
XhoI	CTCGAG	1 cut(s)	89
XspI	CTAG	2 cut(s)	14, 305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.