Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8115592.1

Orthogroup ID

OG0001478

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 615

Gene Structure 615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8115592.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

aaggagaagagcgcaggagaagaggccagcagcaccaaagcgtcgtgggagaagcgctccctcgaatttattgactccttgaggaacttcccatggttcaaggagtatcagaacctcatgaaagactacaagaacaaagaaatcgacttggcaattttggtggagaagatggtggaattgtttaaagggcgccaggagttgatagcagggttcaataaattcttgccagaaacatgtcaaattaccacaccagcaccaacgctactacctagggttagaattgtttgtcaaaagaggaagcgcagcgatgatagtgctagtgatagtgatggtggtattgacggtggggctaaggactctaagattcgaaaagttatcaggtgtgattacaagactgagggaaggtttcgcgacgaagataaggaaagtgatgaaggtcaccatgttttcttgggacacgaatccccaactctgtcaccaagacctaggattacagttctttcaaacaaggcgaagaacaatgatgatagtaccactgattgtgatgacgctggatctatagattctaaacttcggaaagttattgcttttgtgaacaaggtcgaggacaggttc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

205

Amino Acids

23.35

Weight (kDa)

7.79

Isoelectric Point (pI)

49.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23810 AT1G24210 AT1G24220 AT1G24220 AT1G24230 AT1G24250 AT1G27240 AT1G27260 AT1G27270 AT1G27280
fragaria_vesca	FvH4_3g01921 FvH4_3g01930 FvH4_5g11770 FvH4_5g22630
malus_domestica	MD08G1247800.v1.1
pyrus_communis	pycom08g21470 pycom15g39040
rosa_chinensis	RchiOBHm_Chr5g0002831 RchiOBHm_Chr5g0002841
rosa_laevigata	RLG00000003026 RLG00000003029 RLG00000031063 RLG00000031064
rosa_multiflora	Rmu_co8115592.1_g000001 Rmu_co8158784.1_g000001 Rmu_sc0012670.1_g000008 Rmu_sc0012670.1_g000009 Rmu_sc0013603.1_g000011 Rmu_sc0013603.1_g000012
rosa_roxburghii	Rroxscaffold_1G00073010 Rroxscaffold_1G00073020 Rroxscaffold_3G00248150
rosa_rugosa	Rorug04G0400000 Rorug04G0400100
rosa_samantha	Rh5AG022900 Rh5BG025500 Rh5BG025600 Rh5CG025400 Rh5CG025500 Rh5DG024000 Rh5DG024100 Rh7AG255700 Rh7AG256500 Rh7BG250100 Rh7CG272100 Rh7CG272900 Rh7CG273000 Rh7DG262900
rosa_wichuraiana	Rw5G002120 Rw5G002140 Rw7G021870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	189
AccII	CGCG	1 cut(s)	411
AclWI	GGATC	1 cut(s)	562
AcsI	RAATTY	2 cut(s)	65, 218
AcyI	GRCGYC	1 cut(s)	190
AfaI	GTAC	1 cut(s)	532
AfeI	AGCGCT	1 cut(s)	56
AflIII	ACRYGT	1 cut(s)	233
AgsI	TTSAA	3 cut(s)	100, 214, 504
AjnI	CCWGG	1 cut(s)	192
AlwI	GGATC	1 cut(s)	562
Aor51HI	AGCGCT	1 cut(s)	56
AoxI	GGCC	1 cut(s)	24
ApeKI	GCWGC	2 cut(s)	30, 303
ApoI	RAATTY	2 cut(s)	65, 218
AspA2I	CCTAGG	2 cut(s)	269, 485
AspLEI	GCGC	4 cut(s)	14, 57, 192, 303
AsuHPI	GGTGA	2 cut(s)	431, 468
AsuII	TTCGAA	1 cut(s)	367
AvrII	CCTAGG	2 cut(s)	269, 485
BanI	GGYRCC	1 cut(s)	189
BbvI	GCAGC	2 cut(s)	42, 315
BccI	CCATC	2 cut(s)	163, 323
BcgI	CGANNNNNNTGC	2 cut(s)	296, 330
BciT130I	CCWGG	1 cut(s)	194
BfaI	CTAG	3 cut(s)	270, 318, 486
BfmI	CTRYAG	1 cut(s)	558
BfoI	RGCGCY	2 cut(s)	58, 193
BisI	GCNGC	2 cut(s)	31, 304
BlnI	CCTAGG	2 cut(s)	269, 485
BlsI	GCNGC	2 cut(s)	32, 305
Bme1390I	CCNGG	1 cut(s)	194
BmiI	GGNNCC	1 cut(s)	191
BmrFI	CCNGG	1 cut(s)	194
BplI	GAGNNNNNCTC	2 cut(s)	41, 73
Bpu10I	CCTNAGC	1 cut(s)	351
Bpu14I	TTCGAA	1 cut(s)	367
BpuEI	CTTGAG	1 cut(s)	100
BsaHI	GRCGYC	1 cut(s)	190
BsaJI	CCNNGG	3 cut(s)	92, 269, 485
BseBI	CCWGG	1 cut(s)	194
BseDI	CCNNGG	3 cut(s)	92, 269, 485
BseMII	CTCAG	1 cut(s)	387
BseXI	GCAGC	2 cut(s)	42, 315
Bsh1236I	CGCG	1 cut(s)	411
BshFI	GGCC	1 cut(s)	26
BshNI	GGYRCC	1 cut(s)	189
BslFI	GGGAC	1 cut(s)	468
BsmFI	GGGAC	1 cut(s)	468
BsnI	GGCC	1 cut(s)	26
Bsp119I	TTCGAA	1 cut(s)	367
Bsp143I	GATC	1 cut(s)	554
Bsp19I	CCATGG	1 cut(s)	92
Bsp68I	TCGCGA	1 cut(s)	411
BspANI	GGCC	1 cut(s)	26
BspCNI	CTCAG	1 cut(s)	388
BspFNI	CGCG	1 cut(s)	411
BspHI	TCATGA	1 cut(s)	117
BspLI	GGNNCC	1 cut(s)	191
BspPI	GGATC	1 cut(s)	562
BspQI	GCTCTTC	1 cut(s)	2
BspT104I	TTCGAA	1 cut(s)	367
BspT107I	GGYRCC	1 cut(s)	189
BssECI	CCNNGG	3 cut(s)	92, 269, 485
BssMI	GATC	1 cut(s)	554
BssNI	GRCGYC	1 cut(s)	190
BssT1I	CCWWGG	3 cut(s)	92, 269, 485
Bst2UI	CCWGG	1 cut(s)	194
Bst4CI	ACNGT	2 cut(s)	344, 496
Bst6I	CTCTTC	2 cut(s)	2, 15
BstACI	GRCGYC	1 cut(s)	190
BstBI	TTCGAA	1 cut(s)	367
BstC8I	GCNNGC	1 cut(s)	28
BstDEI	CTNAG	3 cut(s)	351, 360, 396
BstDSI	CCRYGG	1 cut(s)	92
BstEII	GGTNACC	1 cut(s)	437
BstFNI	CGCG	1 cut(s)	411
BstH2I	RGCGCY	2 cut(s)	58, 193
BstHHI	GCGC	4 cut(s)	14, 57, 192, 303
BstKTI	GATC	1 cut(s)	557
BstMBI	GATC	1 cut(s)	554
BstNI	CCWGG	1 cut(s)	194
BstNSI	RCATGY	1 cut(s)	237
BstPI	GGTNACC	1 cut(s)	437
BstSCI	CCNGG	1 cut(s)	192
BstSFI	CTRYAG	1 cut(s)	558
BstUI	CGCG	1 cut(s)	411
BstV1I	GCAGC	2 cut(s)	42, 315
BstX2I	RGATCY	1 cut(s)	554
BstYI	RGATCY	1 cut(s)	554
BsuRI	GGCC	1 cut(s)	26
BtgI	CCRYGG	1 cut(s)	92
BtgZI	GCGATG	1 cut(s)	321
BtsIMutI	CAGTG	1 cut(s)	534
BtuMI	TCGCGA	1 cut(s)	411
Cac8I	GCNNGC	1 cut(s)	28
CciI	TCATGA	1 cut(s)	117
CfoI	GCGC	4 cut(s)	14, 57, 192, 303
CseI	GACGC	2 cut(s)	30, 557
Csp6I	GTAC	1 cut(s)	531
CspCI	CAANNNNNGTGG	2 cut(s)	141, 176
CviAII	CATG	4 cut(s)	93, 118, 234, 443
CviJI	RGCY	2 cut(s)	26, 350
CviKI_1	RGCY	2 cut(s)	26, 350
CviQI	GTAC	1 cut(s)	531
DdeI	CTNAG	3 cut(s)	351, 360, 396
DinI	GGCGCC	1 cut(s)	191
DpnI	GATC	1 cut(s)	556
DpnII	GATC	1 cut(s)	554
DraI	TTTAAA	1 cut(s)	184
Eam1104I	CTCTTC	2 cut(s)	2, 15
EarI	CTCTTC	2 cut(s)	2, 15
Eco130I	CCWWGG	3 cut(s)	92, 269, 485
Eco47III	AGCGCT	1 cut(s)	56
Eco91I	GGTNACC	1 cut(s)	437
EcoO65I	GGTNACC	1 cut(s)	437
EcoRII	CCWGG	1 cut(s)	192
EcoT14I	CCWWGG	3 cut(s)	92, 269, 485
EgeI	GGCGCC	1 cut(s)	191
EheI	GGCGCC	1 cut(s)	191
ErhI	CCWWGG	3 cut(s)	92, 269, 485
FaeI	CATG	4 cut(s)	96, 121, 237, 446
FaiI	YATR	5 cut(s)	94, 119, 235, 444, 560
FaqI	GGGAC	1 cut(s)	468
FatI	CATG	4 cut(s)	92, 117, 233, 442
Fnu4HI	GCNGC	2 cut(s)	31, 304
Fsp4HI	GCNGC	2 cut(s)	31, 304
FspBI	CTAG	3 cut(s)	270, 318, 486
GlaI	GCGC	4 cut(s)	13, 56, 191, 302
GluI	GCNGC	2 cut(s)	31, 304
HaeII	RGCGCY	2 cut(s)	58, 193
HaeIII	GGCC	1 cut(s)	26
HgaI	GACGC	2 cut(s)	30, 557
HhaI	GCGC	4 cut(s)	14, 57, 192, 303
Hin1I	GRCGYC	1 cut(s)	190
Hin1II	CATG	4 cut(s)	96, 121, 237, 446
Hin6I	GCGC	4 cut(s)	12, 55, 190, 301
HinP1I	GCGC	4 cut(s)	12, 55, 190, 301
HinfI	GANTC	5 cut(s)	74, 356, 364, 461, 563
HphI	GGTGA	2 cut(s)	431, 468
Hpy166II	GTNNAC	1 cut(s)	595
Hpy188I	TCNGA	2 cut(s)	111, 576
Hpy188III	TCNNGA	2 cut(s)	118, 410
Hpy8I	GTNNAC	1 cut(s)	595
Hpy99I	CGWCG	2 cut(s)	46, 416
HpyAV	CCTTC	2 cut(s)	396, 428
HpyCH4III	ACNGT	2 cut(s)	344, 496
HpyF3I	CTNAG	3 cut(s)	351, 360, 396
Hsp92I	GRCGYC	1 cut(s)	190
Hsp92II	CATG	4 cut(s)	96, 121, 237, 446
HspAI	GCGC	4 cut(s)	12, 55, 190, 301
KasI	GGCGCC	1 cut(s)	189
Kzo9I	GATC	1 cut(s)	554
LguI	GCTCTTC	1 cut(s)	2
LmnI	GCTCC	1 cut(s)	62
LpnPI	CCDG	9 cut(s)	40, 179, 192, 206, 240, 264, 364, 537, 595
Lsp1109I	GCAGC	2 cut(s)	42, 315
MaeI	CTAG	3 cut(s)	270, 318, 486
MaeIII	GTNAC	2 cut(s)	437, 474
MalI	GATC	1 cut(s)	556
MboI	GATC	1 cut(s)	554
MboII	GAAGA	5 cut(s)	19, 32, 178, 428, 526
MflI	RGATCY	1 cut(s)	554
MluCI	AATT	6 cut(s)	65, 153, 176, 218, 240, 279
Mly113I	GGCGCC	1 cut(s)	190
MlyI	GAGTC	2 cut(s)	68, 350
MnlI	CCTC	7 cut(s)	16, 71, 75, 125, 288, 391, 598
MseI	TTAA	1 cut(s)	183
MspR9I	CCNGG	1 cut(s)	194
MvaI	CCWGG	1 cut(s)	194
MvnI	CGCG	1 cut(s)	411
NarI	GGCGCC	1 cut(s)	190
NcoI	CCATGG	1 cut(s)	92
NdeII	GATC	1 cut(s)	554
NlaIII	CATG	4 cut(s)	96, 121, 237, 446
NlaIV	GGNNCC	1 cut(s)	191
NmuCI	GTSAC	2 cut(s)	437, 474
NruI	TCGCGA	1 cut(s)	411
NspI	RCATGY	1 cut(s)	237
NspV	TTCGAA	1 cut(s)	367
PagI	TCATGA	1 cut(s)	117
PciI	ACATGT	1 cut(s)	233
PciSI	GCTCTTC	1 cut(s)	2
PfeI	GAWTC	3 cut(s)	364, 461, 563
PkrI	GCNGC	2 cut(s)	32, 305
PleI	GAGTC	2 cut(s)	68, 350
PluTI	GGCGCC	1 cut(s)	193
PpsI	GAGTC	2 cut(s)	68, 350
PscI	ACATGT	1 cut(s)	233
Psp6I	CCWGG	1 cut(s)	192
PspEI	GGTNACC	1 cut(s)	437
PspGI	CCWGG	1 cut(s)	192
PspN4I	GGNNCC	1 cut(s)	191
PsuI	RGATCY	1 cut(s)	554
RruI	TCGCGA	1 cut(s)	411
RsaI	GTAC	1 cut(s)	532
RsaNI	GTAC	1 cut(s)	531
SapI	GCTCTTC	1 cut(s)	2
SaqAI	TTAA	1 cut(s)	183
SatI	GCNGC	2 cut(s)	31, 304
Sau3AI	GATC	1 cut(s)	554
SchI	GAGTC	2 cut(s)	68, 350
ScrFI	CCNGG	1 cut(s)	194
SetI	ASST	8 cut(s)	117, 271, 383, 407, 439, 487, 603, 614
SfcI	CTRYAG	1 cut(s)	558
SfoI	GGCGCC	1 cut(s)	191
SfuI	TTCGAA	1 cut(s)	367
SmlI	CTYRAG	1 cut(s)	79
SmoI	CTYRAG	1 cut(s)	79
Sse9I	AATT	6 cut(s)	65, 153, 176, 218, 240, 279
SspDI	GGCGCC	1 cut(s)	189
SspMI	CTAG	3 cut(s)	270, 318, 486
StyD4I	CCNGG	1 cut(s)	192
StyI	CCWWGG	3 cut(s)	92, 269, 485
TaaI	ACNGT	2 cut(s)	344, 496
TaqI	TCGA	4 cut(s)	63, 144, 367, 603
TasI	AATT	6 cut(s)	65, 153, 176, 218, 240, 279
TfiI	GAWTC	3 cut(s)	364, 461, 563
Tru1I	TTAA	1 cut(s)	183
Tru9I	TTAA	1 cut(s)	183
TscAI	CASTG	1 cut(s)	541
TseFI	GTSAC	2 cut(s)	437, 474
TseI	GCWGC	2 cut(s)	30, 303
Tsp45I	GTSAC	2 cut(s)	437, 474
TspDTI	ATGAA	2 cut(s)	134, 447
TspRI	CASTG	1 cut(s)	541
XapI	RAATTY	2 cut(s)	65, 218
XceI	RCATGY	1 cut(s)	237
XmaJI	CCTAGG	2 cut(s)	269, 485
XspI	CTAG	3 cut(s)	270, 318, 486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.