Rmu_sc0013603.1_g000012

Paired amphipathic helix protein Sin3-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013603.1
Physical Location & Seq
Reverse (-)
67450 .. 68880
1431 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013603.1_g000012.1.cds

Sequence Viewer

Length: 1431 bp
atggttccactatccgcaaaagagtattccgcagagccgcggatgatgaaggagaagagcgcaggagaagaggccagcagcaccaaagcgtcgtgggagaagcgctccctcgaatttattgactccttgaggaacttcccatggttcaaggagtatcagaacctcatgaaagactacaagaacaaagaaatcgacttggcaattttggtggagaagatggtggaattgtttaaagggcgccaggagttgatagcagggttcaataaattcttgccagaaacatgtcaaattaccacaccagcaccaacgctactacctagggttagaattgtttgtcaaaagaggaagcgcagcgatgatagtgctagtgatagtgatggtggtattgacggtggggctaaggactctaagattcgaaaagttatcaggtgtgattacaagactgagggaaggtttcgcgacgaagataaggaaagtgatgaaggtcaccatgttttcttgggacacgaatccccaactctgtcaccaagacctaggattacagttctttcaaacaaggcgaagaacaatgatgatagtaccactgattgtgatgacgctggatctatagattctaaacttcggaaagttattgcttttgtgaacaaggtcgaggacaggttctgcaacaacaatgatgatggtggtgacgatgatgatacttgtcaatcctatatagagtttttcttggatatggtctgcaaaagaaacaaatcatcacccaataggtctatcgatgctgatgaagaagagcttcagatttacaagaaggttgcaacacttttggaaggccactcggacttaattgatgagttcacccagtttttaactgaagtgcctagagtcgactccatcattgatttccgtaagtgcaagacttgcactccaagctaccgtcttttgccaaaaaatttccccattcctgcttctaccaaaagatcgaagctagcttctgtagtattaaatgatcgttgggtatgcgttaacactagtcctagtactactagttctacttcaagaggaggtggacgacgcataaacggcaaatcgcagcatgagcaagaactattagactgggaagaagaaaagtatgaacatgatatgttggaagagtatgtgaattcggccgcaaataatatcgcaacgctaataaaagagatcaaaaacgagagtccgacggagatttatcttgaagaacatctcacggaaatgaatttgaggtgcattgagagattgtatggtctgcgagggcgtgacatggttgatttgttgaagaacaatattcaagcggttttgcctgttatattaagacggttgaagcaaaagcagaaagaactgaaacgaaaacggtctgatctaaaacaagagtgggctcgtttatttcctgagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

476

Amino Acids

54.76

Weight (kDa)

6.13

Isoelectric Point (pI)

56.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 237
AccI GTMKAC 1 cut(s) 885
AccII CGCG 2 cut(s) 40, 459
AciI CCGC 6 cut(s) 15, 30, 38, 40, 1167, 1328
AclWI GGATC 1 cut(s) 610
AcoI YGGCCR 1 cut(s) 1164
AcsI RAATTY 5 cut(s) 113, 266, 949, 1159, 1252
AcuI CTGAAG 2 cut(s) 779, 891
AcyI GRCGYC 1 cut(s) 238
AfaI GTAC 2 cut(s) 580, 1039
AfeI AGCGCT 1 cut(s) 104
AflIII ACRYGT 1 cut(s) 281
AgsI TTSAA 8 cut(s) 148, 262, 552, 1056, 1232, 1312, 1325, 1357
AhlI ACTAGT 2 cut(s) 1028, 1043
AjnI CCWGG 1 cut(s) 240
AluBI AGCT 4 cut(s) 793, 930, 985, 989
AluI AGCT 4 cut(s) 793, 930, 985, 989
AlwI GGATC 1 cut(s) 610
AlwNI CAGNNNCTG 1 cut(s) 663
Aor51HI AGCGCT 1 cut(s) 104
AoxI GGCC 3 cut(s) 72, 829, 1164
ApeKI GCWGC 3 cut(s) 78, 351, 1090
ApoI RAATTY 5 cut(s) 113, 266, 949, 1159, 1252
Asp700I GAANNNNTTC 1 cut(s) 792
AspA2I CCTAGG 2 cut(s) 317, 533
AspLEI GCGC 4 cut(s) 62, 105, 240, 351
AsuHPI GGTGA 5 cut(s) 479, 516, 698, 750, 847
AsuII TTCGAA 1 cut(s) 415
AsuNHI GCTAGC 1 cut(s) 985
AvrII CCTAGG 2 cut(s) 317, 533
BanI GGYRCC 1 cut(s) 237
BanII GRGCYC 1 cut(s) 1414
BbvI GCAGC 3 cut(s) 90, 363, 1102
BccI CCATC 4 cut(s) 211, 371, 674, 899
BceAI ACGGC 1 cut(s) 1096
BcgI CGANNNNNNTGC 2 cut(s) 344, 378
BciT130I CCWGG 1 cut(s) 242
BcuI ACTAGT 2 cut(s) 1028, 1043
BfaI CTAG 8 cut(s) 318, 366, 534, 879, 986, 1029, 1035, 1044
BfmI CTRYAG 2 cut(s) 606, 993
BfoI RGCGCY 2 cut(s) 106, 241
BisI GCNGC 5 cut(s) 38, 79, 352, 1091, 1167
BlnI CCTAGG 2 cut(s) 317, 533
BlsI GCNGC 5 cut(s) 39, 80, 353, 1092, 1168
BmcAI AGTACT 1 cut(s) 1039
Bme1390I CCNGG 1 cut(s) 242
BmiI GGNNCC 2 cut(s) 6, 239
BmrFI CCNGG 1 cut(s) 242
BmrI ACTGGG 2 cut(s) 853, 1123
BmsI GCATC 1 cut(s) 766
BmtI GCTAGC 1 cut(s) 989
BmuI ACTGGG 2 cut(s) 853, 1123
BplI GAGNNNNNCTC 2 cut(s) 89, 121
Bpu10I CCTNAGC 1 cut(s) 399
Bpu14I TTCGAA 1 cut(s) 415
BpuEI CTTGAG 1 cut(s) 148
Bsa29I ATCGAT 1 cut(s) 774
BsaHI GRCGYC 1 cut(s) 238
BsaJI CCNNGG 4 cut(s) 38, 140, 317, 533
BsaXI ACNNNNNCTCC 2 cut(s) 907, 937
Bse1I ACTGG 2 cut(s) 859, 1118
BseBI CCWGG 1 cut(s) 242
BseCI ATCGAT 1 cut(s) 774
BseDI CCNNGG 4 cut(s) 38, 140, 317, 533
BseGI GGATG 1 cut(s) 48
BseMII CTCAG 2 cut(s) 435, 1416
BseNI ACTGG 2 cut(s) 859, 1118
BseRI GAGGAG 1 cut(s) 1074
BseX3I CGGCCG 1 cut(s) 1164
BseXI GCAGC 3 cut(s) 90, 363, 1102
Bsh1236I CGCG 2 cut(s) 40, 459
Bsh1285I CGRYCG 1 cut(s) 1167
BshFI GGCC 3 cut(s) 74, 831, 1166
BshNI GGYRCC 1 cut(s) 237
BshVI ATCGAT 1 cut(s) 774
BsiEI CGRYCG 1 cut(s) 1167
BslFI GGGAC 1 cut(s) 516
BsmFI GGGAC 1 cut(s) 516
BsnI GGCC 3 cut(s) 74, 831, 1166
Bsp119I TTCGAA 1 cut(s) 415
Bsp1286I GDGCHC 1 cut(s) 1414
Bsp143I GATC 5 cut(s) 602, 977, 1006, 1197, 1393
Bsp19I CCATGG 1 cut(s) 140
Bsp68I TCGCGA 1 cut(s) 459
BspACI CCGC 6 cut(s) 15, 30, 38, 40, 1167, 1328
BspANI GGCC 3 cut(s) 74, 831, 1166
BspCNI CTCAG 2 cut(s) 436, 1417
BspDI ATCGAT 1 cut(s) 774
BspFNI CGCG 2 cut(s) 40, 459
BspHI TCATGA 1 cut(s) 165
BspLI GGNNCC 2 cut(s) 6, 239
BspOI GCTAGC 1 cut(s) 989
BspPI GGATC 1 cut(s) 610
BspQI GCTCTTC 2 cut(s) 50, 783
BspT104I TTCGAA 1 cut(s) 415
BspT107I GGYRCC 1 cut(s) 237
BsrI ACTGG 2 cut(s) 859, 1118
BssECI CCNNGG 4 cut(s) 38, 140, 317, 533
BssMI GATC 5 cut(s) 602, 977, 1006, 1197, 1393
BssNI GRCGYC 1 cut(s) 238
BssT1I CCWWGG 3 cut(s) 140, 317, 533
Bst2UI CCWGG 1 cut(s) 242
Bst4CI ACNGT 5 cut(s) 392, 544, 935, 1353, 1389
Bst6I CTCTTC 4 cut(s) 50, 63, 783, 1143
BstACI GRCGYC 1 cut(s) 238
BstAPI GCANNNNNTGC 1 cut(s) 918
BstBI TTCGAA 1 cut(s) 415
BstC8I GCNNGC 2 cut(s) 76, 987
BstDEI CTNAG 4 cut(s) 399, 408, 444, 1425
BstDSI CCRYGG 2 cut(s) 38, 140
BstEII GGTNACC 1 cut(s) 485
BstF5I GGATG 1 cut(s) 48
BstFNI CGCG 2 cut(s) 40, 459
BstH2I RGCGCY 2 cut(s) 106, 241
BstHHI GCGC 4 cut(s) 62, 105, 240, 351
BstKTI GATC 5 cut(s) 605, 980, 1009, 1200, 1396
BstMBI GATC 5 cut(s) 602, 977, 1006, 1197, 1393
BstMCI CGRYCG 1 cut(s) 1167
BstMWI GCNNNNNNNGC 4 cut(s) 918, 927, 1080, 1096
BstNI CCWGG 1 cut(s) 242
BstNSI RCATGY 1 cut(s) 285
BstPI GGTNACC 1 cut(s) 485
BstSCI CCNGG 1 cut(s) 240
BstSFI CTRYAG 2 cut(s) 606, 993
BstUI CGCG 2 cut(s) 40, 459
BstV1I GCAGC 3 cut(s) 90, 363, 1102
BstX2I RGATCY 1 cut(s) 602
BstYI RGATCY 1 cut(s) 602
BstZI CGGCCG 1 cut(s) 1164
Bsu15I ATCGAT 1 cut(s) 774
BsuRI GGCC 3 cut(s) 74, 831, 1166
BsuTUI ATCGAT 1 cut(s) 774
BtgI CCRYGG 2 cut(s) 38, 140
BtgZI GCGATG 1 cut(s) 369
BtsCI GGATG 1 cut(s) 48
BtsIMutI CAGTG 1 cut(s) 582
BtuMI TCGCGA 1 cut(s) 459
Cac8I GCNNGC 2 cut(s) 76, 987
CaiI CAGNNNCTG 1 cut(s) 663
CciI TCATGA 1 cut(s) 165
CfoI GCGC 4 cut(s) 62, 105, 240, 351
Cfr42I CCGCGG 1 cut(s) 41
ClaI ATCGAT 1 cut(s) 774
CseI GACGC 3 cut(s) 78, 605, 1080
Csp6I GTAC 2 cut(s) 579, 1038
CspCI CAANNNNNGTGG 2 cut(s) 189, 224
CviAII CATG 7 cut(s) 141, 166, 282, 491, 1094, 1136, 1297
CviQI GTAC 2 cut(s) 579, 1038
DdeI CTNAG 4 cut(s) 399, 408, 444, 1425
DinI GGCGCC 1 cut(s) 239
DpnI GATC 5 cut(s) 604, 979, 1008, 1199, 1395
DpnII GATC 5 cut(s) 602, 977, 1006, 1197, 1393
DraI TTTAAA 1 cut(s) 232
EaeI YGGCCR 1 cut(s) 1164
EagI CGGCCG 1 cut(s) 1164
Eam1104I CTCTTC 4 cut(s) 50, 63, 783, 1143
EarI CTCTTC 4 cut(s) 50, 63, 783, 1143
EclXI CGGCCG 1 cut(s) 1164
Eco130I CCWWGG 3 cut(s) 140, 317, 533
Eco24I GRGCYC 1 cut(s) 1414
Eco47III AGCGCT 1 cut(s) 104
Eco52I CGGCCG 1 cut(s) 1164
Eco57I CTGAAG 2 cut(s) 779, 891
Eco91I GGTNACC 1 cut(s) 485
EcoO65I GGTNACC 1 cut(s) 485
EcoRI GAATTC 1 cut(s) 1159
EcoRII CCWGG 1 cut(s) 240
EcoT14I CCWWGG 3 cut(s) 140, 317, 533
EcoT38I GRGCYC 1 cut(s) 1414
EgeI GGCGCC 1 cut(s) 239
EheI GGCGCC 1 cut(s) 239
ErhI CCWWGG 3 cut(s) 140, 317, 533
FaeI CATG 7 cut(s) 144, 169, 285, 494, 1097, 1139, 1300
FalI AAGNNNNNCTT 2 cut(s) 777, 809
FaqI GGGAC 1 cut(s) 516
FatI CATG 7 cut(s) 140, 165, 281, 490, 1093, 1135, 1296
FblI GTMKAC 1 cut(s) 885
Fnu4HI GCNGC 5 cut(s) 38, 79, 352, 1091, 1167
FokI GGATG 1 cut(s) 55
FriOI GRGCYC 1 cut(s) 1414
Fsp4HI GCNGC 5 cut(s) 38, 79, 352, 1091, 1167
FspBI CTAG 8 cut(s) 318, 366, 534, 879, 986, 1029, 1035, 1044
GlaI GCGC 4 cut(s) 61, 104, 239, 350
GluI GCNGC 5 cut(s) 38, 79, 352, 1091, 1167
HaeII RGCGCY 2 cut(s) 106, 241
HaeIII GGCC 3 cut(s) 74, 831, 1166
HgaI GACGC 3 cut(s) 78, 605, 1080
HhaI GCGC 4 cut(s) 62, 105, 240, 351
Hin1I GRCGYC 1 cut(s) 238
Hin1II CATG 7 cut(s) 144, 169, 285, 494, 1097, 1139, 1300
Hin6I GCGC 4 cut(s) 60, 103, 238, 349
HinP1I GCGC 4 cut(s) 60, 103, 238, 349
HincII GTYRAC 2 cut(s) 886, 1024
HindII GTYRAC 2 cut(s) 886, 1024
HinfI GANTC 8 cut(s) 122, 404, 412, 509, 611, 882, 887, 1210
HpaI GTTAAC 1 cut(s) 1024
HphI GGTGA 5 cut(s) 479, 516, 698, 750, 847
Hpy166II GTNNAC 5 cut(s) 643, 855, 886, 1024, 1067
Hpy188I TCNGA 6 cut(s) 159, 624, 798, 838, 1215, 1393
Hpy188III TCNNGA 5 cut(s) 166, 458, 1056, 1229, 1424
Hpy8I GTNNAC 5 cut(s) 643, 855, 886, 1024, 1067
Hpy99I CGWCG 4 cut(s) 94, 464, 1074, 1219
HpyAV CCTTC 5 cut(s) 43, 444, 476, 802, 821
HpyCH4III ACNGT 5 cut(s) 392, 544, 935, 1353, 1389
HpyCH4V TGCA 6 cut(s) 666, 741, 815, 912, 921, 1263
HpyF10VI GCNNNNNNNGC 4 cut(s) 918, 927, 1080, 1096
HpyF3I CTNAG 4 cut(s) 399, 408, 444, 1425
Hsp92I GRCGYC 1 cut(s) 238
Hsp92II CATG 7 cut(s) 144, 169, 285, 494, 1097, 1139, 1300
HspAI GCGC 4 cut(s) 60, 103, 238, 349
KasI GGCGCC 1 cut(s) 237
KspAI GTTAAC 1 cut(s) 1024
KspI CCGCGG 1 cut(s) 41
Kzo9I GATC 5 cut(s) 602, 977, 1006, 1197, 1393
LguI GCTCTTC 2 cut(s) 50, 783
LmnI GCTCC 1 cut(s) 110
Lsp1109I GCAGC 3 cut(s) 90, 363, 1102
LweI GCATC 1 cut(s) 766
MaeI CTAG 8 cut(s) 318, 366, 534, 879, 986, 1029, 1035, 1044
MaeIII GTNAC 4 cut(s) 485, 522, 686, 1292
MalI GATC 5 cut(s) 604, 979, 1008, 1199, 1395
MboI GATC 5 cut(s) 602, 977, 1006, 1197, 1393
MflI RGATCY 1 cut(s) 602
MhlI GDGCHC 1 cut(s) 1414
Mly113I GGCGCC 1 cut(s) 238
MlyI GAGTC 5 cut(s) 116, 398, 881, 891, 1219
MmeI TCCRAC 2 cut(s) 1125, 1238
MroXI GAANNNNTTC 1 cut(s) 792
MseI TTAA 6 cut(s) 231, 842, 866, 1001, 1023, 1346
MslI CAYNNNNRTG 1 cut(s) 1247
MspA1I CMGCKG 1 cut(s) 40
MspR9I CCNGG 1 cut(s) 242
MvaI CCWGG 1 cut(s) 242
MvnI CGCG 2 cut(s) 40, 459
MwoI GCNNNNNNNGC 4 cut(s) 918, 927, 1080, 1096
NarI GGCGCC 1 cut(s) 238
NcoI CCATGG 1 cut(s) 140
NdeII GATC 5 cut(s) 602, 977, 1006, 1197, 1393
NheI GCTAGC 1 cut(s) 985
NlaIII CATG 7 cut(s) 144, 169, 285, 494, 1097, 1139, 1300
NlaIV GGNNCC 2 cut(s) 6, 239
NmuCI GTSAC 4 cut(s) 485, 522, 686, 1292
NruI TCGCGA 1 cut(s) 459
NspI RCATGY 1 cut(s) 285
NspV TTCGAA 1 cut(s) 415
PagI TCATGA 1 cut(s) 165
PciI ACATGT 1 cut(s) 281
PciSI GCTCTTC 2 cut(s) 50, 783
PdmI GAANNNNTTC 1 cut(s) 792
PfeI GAWTC 3 cut(s) 412, 509, 611
PkrI GCNGC 5 cut(s) 39, 80, 353, 1092, 1168
PleI GAGTC 5 cut(s) 116, 398, 881, 890, 1218
PluTI GGCGCC 1 cut(s) 241
PpsI GAGTC 5 cut(s) 116, 398, 881, 890, 1218
PscI ACATGT 1 cut(s) 281
Psp6I CCWGG 1 cut(s) 240
PspEI GGTNACC 1 cut(s) 485
PspGI CCWGG 1 cut(s) 240
PspN4I GGNNCC 2 cut(s) 6, 239
PsrI GAACNNNNNNTAC 2 cut(s) 1030, 1062
PstNI CAGNNNCTG 1 cut(s) 663
PsuI RGATCY 1 cut(s) 602
RruI TCGCGA 1 cut(s) 459
RsaI GTAC 2 cut(s) 580, 1039
RsaNI GTAC 2 cut(s) 579, 1038
RseI CAYNNNNRTG 1 cut(s) 1247
SacII CCGCGG 1 cut(s) 41
SalI GTCGAC 1 cut(s) 884
SapI GCTCTTC 2 cut(s) 50, 783
SaqAI TTAA 6 cut(s) 231, 842, 866, 1001, 1023, 1346
SatI GCNGC 5 cut(s) 38, 79, 352, 1091, 1167
Sau3AI GATC 5 cut(s) 602, 977, 1006, 1197, 1393
ScaI AGTACT 1 cut(s) 1039
SchI GAGTC 5 cut(s) 116, 398, 881, 891, 1219
ScrFI CCNGG 1 cut(s) 242
SduI GDGCHC 1 cut(s) 1414
SfaNI GCATC 1 cut(s) 766
SfcI CTRYAG 2 cut(s) 606, 993
SfoI GGCGCC 1 cut(s) 239
Sfr303I CCGCGG 1 cut(s) 41
SfuI TTCGAA 1 cut(s) 415
SgrBI CCGCGG 1 cut(s) 41
SmiMI CAYNNNNRTG 1 cut(s) 1247
SmlI CTYRAG 1 cut(s) 127
SmoI CTYRAG 1 cut(s) 127
SpeI ACTAGT 2 cut(s) 1028, 1043
SsiI CCGC 6 cut(s) 15, 30, 38, 40, 1167, 1328
SspDI GGCGCC 1 cut(s) 237
SspI AATATT 1 cut(s) 1321
SspMI CTAG 8 cut(s) 318, 366, 534, 879, 986, 1029, 1035, 1044
StyD4I CCNGG 1 cut(s) 240
StyI CCWWGG 3 cut(s) 140, 317, 533
TaaI ACNGT 5 cut(s) 392, 544, 935, 1353, 1389
TaqI TCGA 7 cut(s) 111, 192, 415, 651, 774, 885, 980
TatI WGTACW 1 cut(s) 1037
TauI GCSGC 2 cut(s) 40, 1169
TfiI GAWTC 3 cut(s) 412, 509, 611
Tru1I TTAA 6 cut(s) 231, 842, 866, 1001, 1023, 1346
Tru9I TTAA 6 cut(s) 231, 842, 866, 1001, 1023, 1346
TscAI CASTG 1 cut(s) 589
TseFI GTSAC 4 cut(s) 485, 522, 686, 1292
TseI GCWGC 3 cut(s) 78, 351, 1090
Tsp45I GTSAC 4 cut(s) 485, 522, 686, 1292
TspDTI ATGAA 6 cut(s) 62, 182, 495, 798, 1146, 1265
TspGWI ACGGA 3 cut(s) 893, 1232, 1259
TspRI CASTG 1 cut(s) 589
XapI RAATTY 5 cut(s) 113, 266, 949, 1159, 1252
XceI RCATGY 1 cut(s) 285
XmaJI CCTAGG 2 cut(s) 317, 533
XmiI GTMKAC 1 cut(s) 885
XmnI GAANNNNTTC 1 cut(s) 792
XspI CTAG 8 cut(s) 318, 366, 534, 879, 986, 1029, 1035, 1044
ZrmI AGTACT 1 cut(s) 1039
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.