Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001478

Physical Location & Seq

Genomic Coordinates Reverse (-)

8588295 .. 8589546

Gene Structure 1252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G24250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGCTGGAGGAAGTTTATCACCGGCGTCATCTTTGGAAGATGTAAAGGCATACGTCAATGCTGTGGAGGTCGCATTGCAGGAAATGGAACCTGCAAGATTTGGAATGTTTGTAAGACTCTTTCGTGGTTTTACAGCTCCTAGGATCGGTATGCCTACTTTCAGTGCACGCATGCAGGACCTCTTGAAAGATCACCCGAGTCTGTGTCTTGGTTTAAATGTCTTACTTCCACCTGAGTATCAGTTAACCATACCTCCCGAGGCTAGCGAAGAGTTTCATAAGGTGGTTGGAAGAAGCGTACCAGTACCACCAAAGGTGGTTGGAAGAAGTCTACCACGTCCGGAGCCTACCATAGATGATGCGACTTCATACCTTATTGCTGTGAAGGAAGCCTTTCATGATGAACCTGCAAAATATGGGGAAATGCTTAAGCTCTTGAAAGATTTTAAAGCTCGCAGAGTCGATGCCGCTTGTGTCATTGCTAGGGTGGAGGAACTCATGAAAGATCACTTGAATCTGCTTTTTGGTTTCTGTGTCTTCCTTTCAGCTACAACGAGTTTTACCACGAAGCTTAAGGCAAGGTTTCAGGGCGATGGTAGTCAAGTAGTTGACTCAGTTCTTCAGATAATGAGAATGTACGGTGAGGGAAACAAGTCCAAACATGATGCGTATCAGGAGGTCGTTGCACTTGTTCAGGGTCATGACGATTTAGTCATGGAGCTTTCACAAATTTTGACTGATCCACCTACTGGAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001708 GO:0002119 GO:0002164 GO:0003006 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0007275 GO:0007423 GO:0007548 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009653 GO:0009791 GO:0009887 GO:0009889 GO:0009941 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0030539 GO:0031323 GO:0031326 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0035112 GO:0040011 GO:0040025 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045165 GO:0046661 GO:0048513 GO:0048569 GO:0048608 GO:0048731 GO:0048806 GO:0048808 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090596 GO:0090597 GO:0090598 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

252

Amino Acids

27.81

Weight (kDa)

5.72

Isoelectric Point (pI)

44.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAH	PF02671	35 - 76	1e-06	Paired amphipathic helix repeat
PAH	PF02671	137 - 181	2.3e-10	Paired amphipathic helix repeat
PAH	PF02671	201 - 245	1.5e-07	Paired amphipathic helix repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23810 AT1G24210 AT1G24220 AT1G24220 AT1G24230 AT1G24250 AT1G27240 AT1G27260 AT1G27270 AT1G27280
fragaria_vesca	FvH4_3g01921 FvH4_3g01930 FvH4_5g11770 FvH4_5g22630
malus_domestica	MD08G1247800.v1.1
pyrus_communis	pycom08g21470 pycom15g39040
rosa_chinensis	RchiOBHm_Chr5g0002831 RchiOBHm_Chr5g0002841
rosa_laevigata	RLG00000003026 RLG00000003029 RLG00000031063 RLG00000031064
rosa_multiflora	Rmu_co8115592.1_g000001 Rmu_co8158784.1_g000001 Rmu_sc0012670.1_g000008 Rmu_sc0012670.1_g000009 Rmu_sc0013603.1_g000011 Rmu_sc0013603.1_g000012
rosa_roxburghii	Rroxscaffold_1G00073010 Rroxscaffold_1G00073020 Rroxscaffold_3G00248150
rosa_rugosa	Rorug04G0400000 Rorug04G0400100
rosa_samantha	Rh5AG022900 Rh5BG025500 Rh5BG025600 Rh5CG025400 Rh5CG025500 Rh5DG024000 Rh5DG024100 Rh7AG255700 Rh7AG256500 Rh7BG250100 Rh7CG272100 Rh7CG272900 Rh7CG273000 Rh7DG262900
rosa_wichuraiana	Rw5G002120 Rw5G002140 Rw7G021870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	710
Acc36I	ACCTGC	2 cut(s)	100, 415
AccB7I	CCANNNNNTGG	1 cut(s)	749
AccI	GTMKAC	1 cut(s)	331
AccIII	TCCGGA	1 cut(s)	340
AciI	CCGC	1 cut(s)	468
AclWI	GGATC	2 cut(s)	152, 734
AcsI	RAATTY	1 cut(s)	729
AcuI	CTGAAG	1 cut(s)	605
AcyI	GRCGYC	1 cut(s)	26
AfaI	GTAC	3 cut(s)	300, 306, 638
AfiI	CCNNNNNNNGG	2 cut(s)	146, 749
AflII	CTTAAG	2 cut(s)	428, 572
AgsI	TTSAA	3 cut(s)	187, 439, 514
AjiI	CACGTC	1 cut(s)	338
AluBI	AGCT	6 cut(s)	137, 433, 452, 548, 571, 721
AluI	AGCT	6 cut(s)	137, 433, 452, 548, 571, 721
Alw21I	GWGCWC	1 cut(s)	169
Alw44I	GTGCAC	1 cut(s)	165
AlwI	GGATC	2 cut(s)	152, 734
Ama87I	CYCGRG	2 cut(s)	196, 257
Aor13HI	TCCGGA	1 cut(s)	340
ApaLI	GTGCAC	1 cut(s)	165
ApoI	RAATTY	1 cut(s)	729
Asp700I	GAANNNNTTC	2 cut(s)	273, 393
AspA2I	CCTAGG	1 cut(s)	140
AspS9I	GGNCC	1 cut(s)	178
AsuHPI	GGTGA	3 cut(s)	12, 185, 653
AsuNHI	GCTAGC	1 cut(s)	263
AvaI	CYCGRG	2 cut(s)	196, 257
AvaII	GGWCC	1 cut(s)	178
AvrII	CCTAGG	1 cut(s)	140
BaeGI	GKGCMC	1 cut(s)	169
BaeI	ACNNNNGTAYC	2 cut(s)	221, 254
BbsI	GAAGAC	1 cut(s)	529
Bbv12I	GWGCWC	1 cut(s)	169
BccI	CCATC	1 cut(s)	587
BfaI	CTAG	4 cut(s)	141, 264, 483, 757
BfrI	CTTAAG	2 cut(s)	428, 572
BfuAI	ACCTGC	2 cut(s)	100, 415
BisI	GCNGC	1 cut(s)	468
BlnI	CCTAGG	1 cut(s)	140
BlsI	GCNGC	1 cut(s)	469
Bme18I	GGWCC	1 cut(s)	178
BmeT110I	CYCGRG	2 cut(s)	196, 257
BmgBI	CACGTC	1 cut(s)	338
BmgT120I	GGNCC	1 cut(s)	178
BmiI	GGNNCC	2 cut(s)	90, 345
BmsI	GCATC	3 cut(s)	349, 454, 655
BmtI	GCTAGC	1 cut(s)	267
BpiI	GAAGAC	1 cut(s)	529
BpmI	CTGGAG	1 cut(s)	27
BsaBI	GATNNNNATC	1 cut(s)	669
BsaHI	GRCGYC	1 cut(s)	26
BsaJI	CCNNGG	2 cut(s)	140, 258
BsaWI	WCCGGW	1 cut(s)	340
BsaXI	ACNNNNNCTCC	2 cut(s)	238, 268
Bsc4I	CCNNNNNNNGG	2 cut(s)	146, 749
Bse118I	RCCGGY	1 cut(s)	22
Bse1I	ACTGG	2 cut(s)	302, 754
Bse3DI	GCAATG	2 cut(s)	74, 477
Bse8I	GATNNNNATC	1 cut(s)	669
BseAI	TCCGGA	1 cut(s)	340
BseDI	CCNNGG	2 cut(s)	140, 258
BseJI	GATNNNNATC	1 cut(s)	669
BseLI	CCNNNNNNNGG	2 cut(s)	146, 749
BseMI	GCAATG	2 cut(s)	74, 477
BseMII	CTCAG	2 cut(s)	225, 627
BseNI	ACTGG	2 cut(s)	302, 754
BseSI	GKGCMC	1 cut(s)	169
BsiHKAI	GWGCWC	1 cut(s)	169
BsiHKCI	CYCGRG	2 cut(s)	196, 257
BsiSI	CCGG	2 cut(s)	23, 341
BslI	CCNNNNNNNGG	2 cut(s)	146, 749
BsoBI	CYCGRG	2 cut(s)	196, 257
Bsp1286I	GDGCHC	1 cut(s)	169
Bsp13I	TCCGGA	1 cut(s)	340
Bsp143I	GATC	4 cut(s)	144, 190, 505, 739
BspACI	CCGC	1 cut(s)	468
BspCNI	CTCAG	2 cut(s)	226, 626
BspEI	TCCGGA	1 cut(s)	340
BspHI	TCATGA	3 cut(s)	397, 498, 700
BspLI	GGNNCC	2 cut(s)	90, 345
BspMI	ACCTGC	2 cut(s)	100, 415
BspOI	GCTAGC	1 cut(s)	267
BspPI	GGATC	2 cut(s)	152, 734
BspTI	CTTAAG	2 cut(s)	428, 572
BsrDI	GCAATG	2 cut(s)	74, 477
BsrFI	RCCGGY	1 cut(s)	22
BsrI	ACTGG	2 cut(s)	302, 754
BssAI	RCCGGY	1 cut(s)	22
BssECI	CCNNGG	2 cut(s)	140, 258
BssMI	GATC	4 cut(s)	144, 190, 505, 739
BssNI	GRCGYC	1 cut(s)	26
BssT1I	CCWWGG	1 cut(s)	140
Bst4CI	ACNGT	1 cut(s)	641
Bst6I	CTCTTC	1 cut(s)	264
BstACI	GRCGYC	1 cut(s)	26
BstAFI	CTTAAG	2 cut(s)	428, 572
BstC8I	GCNNGC	4 cut(s)	169, 173, 265, 454
BstDEI	CTNAG	2 cut(s)	234, 613
BstKTI	GATC	4 cut(s)	147, 193, 508, 742
BstMBI	GATC	4 cut(s)	144, 190, 505, 739
BstNSI	RCATGY	1 cut(s)	175
BstSLI	GKGCMC	1 cut(s)	169
BstV2I	GAAGAC	1 cut(s)	529
BtgZI	GCGATG	1 cut(s)	606
BtrI	CACGTC	1 cut(s)	338
BtsIMutI	CAGTG	1 cut(s)	169
BveI	ACCTGC	2 cut(s)	100, 415
Cac8I	GCNNGC	4 cut(s)	169, 173, 265, 454
CciI	TCATGA	3 cut(s)	397, 498, 700
Cfr10I	RCCGGY	1 cut(s)	22
Cfr13I	GGNCC	1 cut(s)	178
CseI	GACGC	1 cut(s)	15
Csp6I	GTAC	3 cut(s)	299, 305, 637
CviAII	CATG	6 cut(s)	172, 398, 499, 662, 701, 715
CviQI	GTAC	3 cut(s)	299, 305, 637
DdeI	CTNAG	2 cut(s)	234, 613
DpnI	GATC	4 cut(s)	146, 192, 507, 741
DpnII	GATC	4 cut(s)	144, 190, 505, 739
DraI	TTTAAA	2 cut(s)	216, 448
DrdI	GACNNNNNNGTC	1 cut(s)	710
DseDI	GACNNNNNNGTC	1 cut(s)	710
Eam1104I	CTCTTC	1 cut(s)	264
EarI	CTCTTC	1 cut(s)	264
Eco130I	CCWWGG	1 cut(s)	140
Eco47I	GGWCC	1 cut(s)	178
Eco57I	CTGAAG	1 cut(s)	605
Eco88I	CYCGRG	2 cut(s)	196, 257
EcoO109I	RGGNCCY	1 cut(s)	178
EcoT14I	CCWWGG	1 cut(s)	140
ErhI	CCWWGG	1 cut(s)	140
FaeI	CATG	6 cut(s)	175, 401, 502, 665, 704, 718
FalI	AAGNNNNNCTT	2 cut(s)	377, 409
FatI	CATG	6 cut(s)	171, 397, 498, 661, 700, 714
FblI	GTMKAC	1 cut(s)	331
Fnu4HI	GCNGC	1 cut(s)	468
Fsp4HI	GCNGC	1 cut(s)	468
FspBI	CTAG	4 cut(s)	141, 264, 483, 757
GluI	GCNGC	1 cut(s)	468
GsuI	CTGGAG	1 cut(s)	27
HapII	CCGG	2 cut(s)	23, 341
HgaI	GACGC	1 cut(s)	15
Hin1I	GRCGYC	1 cut(s)	26
Hin1II	CATG	6 cut(s)	175, 401, 502, 665, 704, 718
HincII	GTYRAC	2 cut(s)	246, 610
HindII	GTYRAC	2 cut(s)	246, 610
HindIII	AAGCTT	1 cut(s)	569
HinfI	GANTC	6 cut(s)	117, 199, 459, 514, 611, 753
HpaI	GTTAAC	1 cut(s)	246
HpaII	CCGG	2 cut(s)	23, 341
HphI	GGTGA	3 cut(s)	12, 185, 653
Hpy166II	GTNNAC	4 cut(s)	167, 246, 332, 610
Hpy188I	TCNGA	1 cut(s)	624
Hpy188III	TCNNGA	8 cut(s)	184, 257, 341, 398, 436, 499, 674, 701
Hpy8I	GTNNAC	4 cut(s)	167, 246, 332, 610
HpyAV	CCTTC	1 cut(s)	379
HpyCH4III	ACNGT	1 cut(s)	641
HpyCH4IV	ACGT	2 cut(s)	54, 337
HpyCH4V	TGCA	6 cut(s)	79, 95, 167, 175, 410, 686
HpyF3I	CTNAG	2 cut(s)	234, 613
HpySE526I	ACGT	2 cut(s)	54, 337
Hsp92I	GRCGYC	1 cut(s)	26
Hsp92II	CATG	6 cut(s)	175, 401, 502, 665, 704, 718
Kpn2I	TCCGGA	1 cut(s)	340
KspAI	GTTAAC	1 cut(s)	246
Kzo9I	GATC	4 cut(s)	144, 190, 505, 739
LmnI	GCTCC	3 cut(s)	142, 343, 718
LweI	GCATC	3 cut(s)	349, 454, 655
MaeI	CTAG	4 cut(s)	141, 264, 483, 757
MaeII	ACGT	2 cut(s)	54, 337
MalI	GATC	4 cut(s)	146, 192, 507, 741
MboI	GATC	4 cut(s)	144, 190, 505, 739
MboII	GAAGA	6 cut(s)	50, 281, 303, 336, 529, 611
MhlI	GDGCHC	1 cut(s)	169
MluCI	AATT	1 cut(s)	729
MlyI	GAGTC	4 cut(s)	111, 208, 468, 605
MmeI	TCCRAC	2 cut(s)	268, 301
MnlI	CCTC	7 cut(s)	61, 191, 253, 264, 484, 637, 670
MroI	TCCGGA	1 cut(s)	340
MroXI	GAANNNNTTC	2 cut(s)	273, 393
MseI	TTAA	5 cut(s)	215, 245, 429, 447, 573
MspCI	CTTAAG	2 cut(s)	428, 572
MspI	CCGG	2 cut(s)	23, 341
NdeII	GATC	4 cut(s)	144, 190, 505, 739
NheI	GCTAGC	1 cut(s)	263
NlaIII	CATG	6 cut(s)	175, 401, 502, 665, 704, 718
NlaIV	GGNNCC	2 cut(s)	90, 345
NspI	RCATGY	1 cut(s)	175
PaeI	GCATGC	1 cut(s)	175
PagI	TCATGA	3 cut(s)	397, 498, 700
PdmI	GAANNNNTTC	2 cut(s)	273, 393
PfeI	GAWTC	1 cut(s)	514
PflMI	CCANNNNNTGG	1 cut(s)	749
PkrI	GCNGC	1 cut(s)	469
PleI	GAGTC	4 cut(s)	111, 207, 467, 605
PpsI	GAGTC	4 cut(s)	111, 207, 467, 605
PpuMI	RGGWCCY	1 cut(s)	178
Psp5II	RGGWCCY	1 cut(s)	178
PspN4I	GGNNCC	2 cut(s)	90, 345
PspPI	GGNCC	1 cut(s)	178
PspPPI	RGGWCCY	1 cut(s)	178
RsaI	GTAC	3 cut(s)	300, 306, 638
RsaNI	GTAC	3 cut(s)	299, 305, 637
SaqAI	TTAA	5 cut(s)	215, 245, 429, 447, 573
SatI	GCNGC	1 cut(s)	468
Sau3AI	GATC	4 cut(s)	144, 190, 505, 739
Sau96I	GGNCC	1 cut(s)	178
SchI	GAGTC	4 cut(s)	111, 208, 468, 605
SduI	GDGCHC	1 cut(s)	169
SfaNI	GCATC	3 cut(s)	349, 454, 655
SgrAI	CRCCGGYG	1 cut(s)	22
SinI	GGWCC	1 cut(s)	178
SmlI	CTYRAG	2 cut(s)	428, 572
SmoI	CTYRAG	2 cut(s)	428, 572
SphI	GCATGC	1 cut(s)	175
Sse9I	AATT	1 cut(s)	729
SsiI	CCGC	1 cut(s)	468
SspMI	CTAG	4 cut(s)	141, 264, 483, 757
StyI	CCWWGG	1 cut(s)	140
TaaI	ACNGT	1 cut(s)	641
TaiI	ACGT	2 cut(s)	57, 340
TaqI	TCGA	1 cut(s)	462
TasI	AATT	1 cut(s)	729
TauI	GCSGC	1 cut(s)	470
TfiI	GAWTC	1 cut(s)	514
Tru1I	TTAA	5 cut(s)	215, 245, 429, 447, 573
Tru9I	TTAA	5 cut(s)	215, 245, 429, 447, 573
TscAI	CASTG	1 cut(s)	169
TspDTI	ATGAA	5 cut(s)	266, 357, 386, 417, 515
TspRI	CASTG	1 cut(s)	169
Van91I	CCANNNNNTGG	1 cut(s)	749
Vha464I	CTTAAG	2 cut(s)	428, 572
VneI	GTGCAC	1 cut(s)	165
VpaK11BI	GGWCC	1 cut(s)	178
XapI	RAATTY	1 cut(s)	729
XceI	RCATGY	1 cut(s)	175
XmaJI	CCTAGG	1 cut(s)	140
XmiI	GTMKAC	1 cut(s)	331
XmnI	GAANNNNTTC	2 cut(s)	273, 393
XspI	CTAG	4 cut(s)	141, 264, 483, 757

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.