FvH4_3g01921

Paired amphipathic helix protein Sin3-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
981811 .. 983217
1407 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g01921.t1

Sequence Viewer

Length: 1407 bp
ATGATGGAGGAGATGAGCGCAGGAGAAGAATCCAGCAGCAGCACCAAAGCGGCGAAGGAGGAGCTCAGCCTCAAATTTTTAAACTCTCTGAGGGACTTCCCACGGTTCAAGGACTATCAGAATCTCATGAAAGAGTTCAGAATCAACAAAGATATGGCCAGTATGGCCGAGAAGATGGCGGAATTGTTTCAAGGGCACTCGGAGCTGATTGCAGGGTTCAATCAATTCTTACCAGAGAGGCTTCAAATTACCATACCTAAGCTAGTTTGTCAAAAGAGGAAGCGCAGGGACGATACTGCTAGTGATAGTAATGATGGTGTTGATGATGCTAGAGCCAAGGGTTCTAAGATTCGGAAAGTTACCGGGTGCGAGAACAAGACTAAAGAAAGGTTCTGCAACGAAGATATGGTAGTTTGTCAAAAGAGGAAGCGCATGGACGATAGTGCTAGTGATAGTAATGGTGACGTTGATGCTAGAGCTAAGGGTTCCAAGATTCGAAAAGTTACCAGGTGCGAGAACAAGACTATAGAAAAGTTTTGCAACGAAAGTGATGATGATCACCATGGTCACCAAGCGAAGCGCGATGATGATAGTACCACTGATAGTGATGAAGATGAATCTACAGAATCTAAACTTGAGAAGGTCATTGCTTTTGTGAACAAGGTGGAGGAAAGGTTTCGTGACAACAATGATGGTGTAGAGCTTTTCTTGGATATGGTCTGCAAAAGAAGCAAATCATCACCCAATAGGTCTACCGATGCTGATGAAGAAGAGCTTCAGATTTACAAGAAGGTTGTAACACTTTTGGGAGATCACCATGACTTAATTGATGAGTTCACCCAGTTCTTAACCGAAGTGCCTAGAATCGACTCCATCATCGACTTCAACAAGTGCAAGAGAGGCACTCCAAGCTACCGTCTGTTGCCAATGAATTTCCCTATTCCTGCTGCTACCGGGAGATCGGAGCTAGCTCATAAAGTATTGAATGATCGTTGGATATGCGTAGACACCAGTCCTAGTACTTCTAGTTCTACTTCAAGAAGACGAAGCCGTAAATCGCAGCATGAGCTAGACCTATTAGACTGGGAAGAACAAATGTGTGAAAATAGAGTGTGGGAAGAGAATGTGGAGTCGGCCTTATGTACTATCGAAGCACTAATAGAAAAGAATCAAAAGATGCACACCATGAGTCCGAAGAAGAAAATTTGTATCAAAAAACGTCGGTCACATGTGAGTTTGATCAGGTGCATTATCAAATTTTATGGGTGTGAAATGATTGATGCTGTGAACAACAACATCCAAGTGGAATTGCCTGTTTTATTAGAACGATTGAAGCAGAAGAAAAAAGCACTGAGACGAAAGCTTTCTGATATAGAACAGAAATGGGCTTACTTATTTCCCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

469

Amino Acids

54.13

Weight (kDa)

7.5

Isoelectric Point (pI)

58.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAH PF02671 41 - 77 1.9e-07 Paired amphipathic helix repeat
Sin3_corepress PF08295 300 - 394 3e-15 Sin3 family co-repressor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 752, 1005
AccII CGCG 1 cut(s) 582
AciI CCGC 2 cut(s) 50, 179
AcoI YGGCCR 2 cut(s) 156, 165
AcsI RAATTY 4 cut(s) 74, 931, 1203, 1256
AcuI CTGAAG 1 cut(s) 761
AfaI GTAC 3 cut(s) 595, 1021, 1144
AflIII ACRYGT 1 cut(s) 1228
AgsI TTSAA 8 cut(s) 109, 191, 220, 245, 886, 985, 1038, 1333
AjnI CCWGG 1 cut(s) 506
Alw21I GWGCWC 1 cut(s) 66
Alw26I GTCTC 1 cut(s) 1348
AoxI GGCC 3 cut(s) 156, 165, 1134
ApeKI GCWGC 4 cut(s) 36, 39, 947, 1060
ApoI RAATTY 4 cut(s) 74, 931, 1203, 1256
Asp700I GAANNNNTTC 5 cut(s) 134, 186, 675, 774, 1363
AspLEI GCGC 4 cut(s) 20, 285, 432, 582
AsuC2I CCSGG 2 cut(s) 364, 955
AsuHPI GGTGA 6 cut(s) 473, 551, 560, 732, 806, 829
AsuII TTCGAA 1 cut(s) 496
AsuNHI GCTAGC 1 cut(s) 967
BaeGI GKGCMC 1 cut(s) 198
BalI TGGCCA 1 cut(s) 158
BanII GRGCYC 1 cut(s) 66
BbsI GAAGAC 1 cut(s) 1048
Bbv12I GWGCWC 1 cut(s) 66
BbvI GCAGC 4 cut(s) 48, 51, 934, 1072
BccI CCATC 4 cut(s) 169, 308, 686, 881
BceAI ACGGC 1 cut(s) 1035
BciT130I CCWGG 1 cut(s) 508
BclI TGATCA 2 cut(s) 556, 1239
BcnI CCSGG 2 cut(s) 364, 955
BcoDI GTCTC 1 cut(s) 1348
BfmI CTRYAG 2 cut(s) 525, 621
BglI GCCNNNNNGGC 1 cut(s) 164
BisI GCNGC 5 cut(s) 37, 40, 51, 948, 1061
BlpI GCTNAGC 1 cut(s) 65
BlsI GCNGC 5 cut(s) 38, 41, 52, 949, 1062
BmcAI AGTACT 1 cut(s) 1021
Bme1390I CCNGG 3 cut(s) 364, 508, 955
BmiI GGNNCC 1 cut(s) 487
BmrFI CCNGG 3 cut(s) 364, 508, 955
BmrI ACTGGG 2 cut(s) 835, 1093
BmsI GCATC 5 cut(s) 316, 460, 748, 1167, 1270
BmtI GCTAGC 1 cut(s) 971
BmuI ACTGGG 2 cut(s) 835, 1093
BoxI GACNNNNGTC 1 cut(s) 1011
BpiI GAAGAC 1 cut(s) 1048
BplI GAGNNNNNCTC 2 cut(s) 889, 921
Bpu10I CCTNAGC 2 cut(s) 258, 480
Bpu1102I GCTNAGC 1 cut(s) 65
Bpu14I TTCGAA 1 cut(s) 496
BpuEI CTTGAG 1 cut(s) 656
BpuMI CCSGG 2 cut(s) 364, 955
BsaBI GATNNNNATC 1 cut(s) 555
BsaJI CCNNGG 3 cut(s) 101, 336, 562
BsaXI ACNNNNNCTCC 2 cut(s) 659, 689
Bse1I ACTGG 4 cut(s) 159, 841, 1011, 1088
Bse3DI GCAATG 1 cut(s) 645
Bse8I GATNNNNATC 1 cut(s) 555
BseBI CCWGG 1 cut(s) 508
BseDI CCNNGG 3 cut(s) 101, 336, 562
BseGI GGATG 1 cut(s) 1296
BseJI GATNNNNATC 1 cut(s) 555
BseMI GCAATG 1 cut(s) 645
BseMII CTCAG 3 cut(s) 79, 80, 1343
BseNI ACTGG 4 cut(s) 159, 841, 1011, 1088
BseRI GAGGAG 2 cut(s) 23, 74
BseSI GKGCMC 1 cut(s) 198
BseXI GCAGC 4 cut(s) 48, 51, 934, 1072
Bsh1236I CGCG 1 cut(s) 582
BshFI GGCC 3 cut(s) 158, 167, 1136
BsiHKAI GWGCWC 1 cut(s) 66
BsiSI CCGG 2 cut(s) 363, 954
BslFI GGGAC 2 cut(s) 107, 302
BsmAI GTCTC 1 cut(s) 1348
BsmBI CGTCTC 1 cut(s) 1348
BsmFI GGGAC 2 cut(s) 107, 302
BsnI GGCC 3 cut(s) 158, 167, 1136
Bsp119I TTCGAA 1 cut(s) 496
Bsp1286I GDGCHC 2 cut(s) 66, 198
Bsp143I GATC 5 cut(s) 556, 811, 959, 988, 1239
Bsp1720I GCTNAGC 1 cut(s) 65
Bsp19I CCATGG 1 cut(s) 562
BspACI CCGC 2 cut(s) 50, 179
BspANI GGCC 3 cut(s) 158, 167, 1136
BspCNI CTCAG 3 cut(s) 78, 81, 1344
BspFNI CGCG 1 cut(s) 582
BspHI TCATGA 1 cut(s) 126
BspLI GGNNCC 1 cut(s) 487
BspOI GCTAGC 1 cut(s) 971
BspQI GCTCTTC 1 cut(s) 765
BspT104I TTCGAA 1 cut(s) 496
BsrDI GCAATG 1 cut(s) 645
BsrI ACTGG 4 cut(s) 159, 841, 1011, 1088
BssECI CCNNGG 3 cut(s) 101, 336, 562
BssMI GATC 5 cut(s) 556, 811, 959, 988, 1239
BssT1I CCWWGG 2 cut(s) 336, 562
Bst2UI CCWGG 1 cut(s) 508
Bst4CI ACNGT 2 cut(s) 105, 917
Bst6I CTCTTC 2 cut(s) 765, 1113
BstBI TTCGAA 1 cut(s) 496
BstC8I GCNNGC 1 cut(s) 969
BstDEI CTNAG 6 cut(s) 65, 89, 258, 345, 480, 1352
BstDSI CCRYGG 2 cut(s) 101, 562
BstEII GGTNACC 1 cut(s) 566
BstF5I GGATG 1 cut(s) 1296
BstFNI CGCG 1 cut(s) 582
BstHHI GCGC 4 cut(s) 20, 285, 432, 582
BstKTI GATC 5 cut(s) 559, 814, 962, 991, 1242
BstMAI GTCTC 1 cut(s) 1348
BstMBI GATC 5 cut(s) 556, 811, 959, 988, 1239
BstMWI GCNNNNNNNGC 6 cut(s) 164, 202, 729, 900, 909, 1066
BstNI CCWGG 1 cut(s) 508
BstNSI RCATGY 1 cut(s) 1232
BstPAI GACNNNNGTC 1 cut(s) 1011
BstPI GGTNACC 1 cut(s) 566
BstSCI CCNGG 3 cut(s) 362, 506, 953
BstSFI CTRYAG 2 cut(s) 525, 621
BstSLI GKGCMC 1 cut(s) 198
BstUI CGCG 1 cut(s) 582
BstV1I GCAGC 4 cut(s) 48, 51, 934, 1072
BstV2I GAAGAC 1 cut(s) 1048
BsuRI GGCC 3 cut(s) 158, 167, 1136
BtgI CCRYGG 2 cut(s) 101, 562
BtgZI GCGATG 1 cut(s) 597
BtsCI GGATG 1 cut(s) 1296
BtsIMutI CAGTG 2 cut(s) 597, 1349
Cac8I GCNNGC 1 cut(s) 969
CciI TCATGA 1 cut(s) 126
CfoI GCGC 4 cut(s) 20, 285, 432, 582
CsiI ACCWGGT 1 cut(s) 506
Csp6I GTAC 3 cut(s) 594, 1020, 1143
CviAII CATG 7 cut(s) 127, 433, 563, 818, 1064, 1186, 1229
CviQI GTAC 3 cut(s) 594, 1020, 1143
DdeI CTNAG 6 cut(s) 65, 89, 258, 345, 480, 1352
DpnI GATC 5 cut(s) 558, 813, 961, 990, 1241
DpnII GATC 5 cut(s) 556, 811, 959, 988, 1239
DraI TTTAAA 1 cut(s) 81
EaeI YGGCCR 2 cut(s) 156, 165
Eam1104I CTCTTC 2 cut(s) 765, 1113
EarI CTCTTC 2 cut(s) 765, 1113
EciI GGCGGA 1 cut(s) 194
Ecl136II GAGCTC 1 cut(s) 64
Eco130I CCWWGG 2 cut(s) 336, 562
Eco24I GRGCYC 1 cut(s) 66
Eco53kI GAGCTC 1 cut(s) 64
Eco57I CTGAAG 1 cut(s) 761
Eco91I GGTNACC 1 cut(s) 566
EcoICRI GAGCTC 1 cut(s) 64
EcoO65I GGTNACC 1 cut(s) 566
EcoRII CCWGG 1 cut(s) 506
EcoT14I CCWWGG 2 cut(s) 336, 562
EcoT38I GRGCYC 1 cut(s) 66
ErhI CCWWGG 2 cut(s) 336, 562
Esp3I CGTCTC 1 cut(s) 1348
FaeI CATG 7 cut(s) 130, 436, 566, 821, 1067, 1189, 1232
FalI AAGNNNNNCTT 2 cut(s) 759, 791
FaqI GGGAC 2 cut(s) 107, 302
FatI CATG 7 cut(s) 126, 432, 562, 817, 1063, 1185, 1228
FbaI TGATCA 2 cut(s) 556, 1239
FblI GTMKAC 2 cut(s) 752, 1005
Fnu4HI GCNGC 5 cut(s) 37, 40, 51, 948, 1061
FokI GGATG 1 cut(s) 1283
FriOI GRGCYC 1 cut(s) 66
Fsp4HI GCNGC 5 cut(s) 37, 40, 51, 948, 1061
GlaI GCGC 4 cut(s) 19, 284, 431, 581
GluI GCNGC 5 cut(s) 37, 40, 51, 948, 1061
HaeIII GGCC 3 cut(s) 158, 167, 1136
HapII CCGG 2 cut(s) 363, 954
HhaI GCGC 4 cut(s) 20, 285, 432, 582
Hin1II CATG 7 cut(s) 130, 436, 566, 821, 1067, 1189, 1232
Hin6I GCGC 4 cut(s) 18, 283, 430, 580
HinP1I GCGC 4 cut(s) 18, 283, 430, 580
HindIII AAGCTT 1 cut(s) 1361
HpaII CCGG 2 cut(s) 363, 954
HphI GGTGA 6 cut(s) 473, 551, 560, 732, 806, 829
Hpy166II GTNNAC 5 cut(s) 658, 753, 837, 1006, 1288
Hpy188I TCNGA 9 cut(s) 90, 120, 140, 202, 354, 780, 964, 1194, 1369
Hpy188III TCNNGA 3 cut(s) 127, 680, 1038
Hpy8I GTNNAC 5 cut(s) 658, 753, 837, 1006, 1288
Hpy99I CGWCG 1 cut(s) 1224
HpyAV CCTTC 3 cut(s) 49, 634, 784
HpyCH4III ACNGT 2 cut(s) 105, 917
HpyCH4IV ACGT 2 cut(s) 465, 1219
HpyCH4V TGCA 7 cut(s) 212, 396, 540, 723, 894, 1180, 1248
HpyF10VI GCNNNNNNNGC 6 cut(s) 164, 202, 729, 900, 909, 1066
HpyF3I CTNAG 6 cut(s) 65, 89, 258, 345, 480, 1352
HpySE526I ACGT 2 cut(s) 465, 1219
Hsp92II CATG 7 cut(s) 130, 436, 566, 821, 1067, 1189, 1232
HspAI GCGC 4 cut(s) 18, 283, 430, 580
Ksp22I TGATCA 2 cut(s) 556, 1239
Kzo9I GATC 5 cut(s) 556, 811, 959, 988, 1239
LguI GCTCTTC 1 cut(s) 765
LmnI GCTCC 3 cut(s) 61, 202, 964
Lsp1109I GCAGC 4 cut(s) 48, 51, 934, 1072
LweI GCATC 5 cut(s) 316, 460, 748, 1167, 1270
MabI ACCWGGT 1 cut(s) 506
MaeII ACGT 2 cut(s) 465, 1219
MaeIII GTNAC 7 cut(s) 358, 461, 502, 566, 680, 796, 1224
MalI GATC 5 cut(s) 558, 813, 961, 990, 1241
MboI GATC 5 cut(s) 556, 811, 959, 988, 1239
MfeI CAATTG 1 cut(s) 1402
MhlI GDGCHC 2 cut(s) 66, 198
MlsI TGGCCA 1 cut(s) 158
MluNI TGGCCA 1 cut(s) 158
MlyI GAGTC 3 cut(s) 863, 1139, 1198
MmeI TCCRAC 1 cut(s) 974
MnlI CCTC 8 cut(s) 52, 80, 84, 231, 270, 417, 661, 893
Mox20I TGGCCA 1 cut(s) 158
MroXI GAANNNNTTC 5 cut(s) 134, 186, 675, 774, 1363
MscI TGGCCA 1 cut(s) 158
MseI TTAA 3 cut(s) 80, 824, 848
MslI CAYNNNNRTG 1 cut(s) 1301
Msp20I TGGCCA 1 cut(s) 158
MspI CCGG 2 cut(s) 363, 954
MspR9I CCNGG 3 cut(s) 364, 508, 955
MunI CAATTG 1 cut(s) 1402
MvaI CCWGG 1 cut(s) 508
MvnI CGCG 1 cut(s) 582
MwoI GCNNNNNNNGC 6 cut(s) 164, 202, 729, 900, 909, 1066
NciI CCSGG 2 cut(s) 364, 955
NcoI CCATGG 1 cut(s) 562
NdeII GATC 5 cut(s) 556, 811, 959, 988, 1239
NheI GCTAGC 1 cut(s) 967
NlaIII CATG 7 cut(s) 130, 436, 566, 821, 1067, 1189, 1232
NlaIV GGNNCC 1 cut(s) 487
NmeAIII GCCGAG 1 cut(s) 193
NmuCI GTSAC 4 cut(s) 461, 566, 680, 1224
NspI RCATGY 1 cut(s) 1232
NspV TTCGAA 1 cut(s) 496
PagI TCATGA 1 cut(s) 126
PciI ACATGT 1 cut(s) 1228
PciSI GCTCTTC 1 cut(s) 765
PdmI GAANNNNTTC 5 cut(s) 134, 186, 675, 774, 1363
PfeI GAWTC 9 cut(s) 29, 121, 141, 349, 493, 617, 626, 864, 1168
PkrI GCNGC 5 cut(s) 38, 41, 52, 949, 1062
PleI GAGTC 3 cut(s) 863, 1138, 1197
PpsI GAGTC 3 cut(s) 863, 1138, 1197
PscI ACATGT 1 cut(s) 1228
PshAI GACNNNNGTC 1 cut(s) 1011
Psp124BI GAGCTC 1 cut(s) 66
Psp6I CCWGG 1 cut(s) 506
PspEI GGTNACC 1 cut(s) 566
PspGI CCWGG 1 cut(s) 506
PspN4I GGNNCC 1 cut(s) 487
PsrI GAACNNNNNNTAC 2 cut(s) 1012, 1044
RsaI GTAC 3 cut(s) 595, 1021, 1144
RsaNI GTAC 3 cut(s) 594, 1020, 1143
RseI CAYNNNNRTG 1 cut(s) 1301
SacI GAGCTC 1 cut(s) 66
SapI GCTCTTC 1 cut(s) 765
SaqAI TTAA 3 cut(s) 80, 824, 848
SatI GCNGC 5 cut(s) 37, 40, 51, 948, 1061
Sau3AI GATC 5 cut(s) 556, 811, 959, 988, 1239
ScaI AGTACT 1 cut(s) 1021
SchI GAGTC 3 cut(s) 863, 1139, 1198
ScrFI CCNGG 3 cut(s) 364, 508, 955
SduI GDGCHC 2 cut(s) 66, 198
SexAI ACCWGGT 1 cut(s) 506
SfaNI GCATC 5 cut(s) 316, 460, 748, 1167, 1270
SfcI CTRYAG 2 cut(s) 525, 621
SfiI GGCCNNNNNGGCC 1 cut(s) 164
SfuI TTCGAA 1 cut(s) 496
SmiMI CAYNNNNRTG 1 cut(s) 1301
SmlI CTYRAG 1 cut(s) 635
SmoI CTYRAG 1 cut(s) 635
SsiI CCGC 2 cut(s) 50, 179
SstI GAGCTC 1 cut(s) 66
StyD4I CCNGG 3 cut(s) 362, 506, 953
StyI CCWWGG 2 cut(s) 336, 562
TaaI ACNGT 2 cut(s) 105, 917
TaiI ACGT 2 cut(s) 468, 1222
TaqI TCGA 4 cut(s) 496, 867, 879, 1149
TaqII GACCGA 1 cut(s) 1212
TatI WGTACW 2 cut(s) 1019, 1142
TauI GCSGC 1 cut(s) 53
TfiI GAWTC 9 cut(s) 29, 121, 141, 349, 493, 617, 626, 864, 1168
Tru1I TTAA 3 cut(s) 80, 824, 848
Tru9I TTAA 3 cut(s) 80, 824, 848
TscAI CASTG 2 cut(s) 604, 1356
TseFI GTSAC 4 cut(s) 461, 566, 680, 1224
TseI GCWGC 4 cut(s) 36, 39, 947, 1060
Tsp45I GTSAC 4 cut(s) 461, 566, 680, 1224
TspDTI ATGAA 5 cut(s) 143, 624, 630, 780, 944
TspRI CASTG 2 cut(s) 604, 1356
XapI RAATTY 4 cut(s) 74, 931, 1203, 1256
XceI RCATGY 1 cut(s) 1232
XmiI GTMKAC 2 cut(s) 752, 1005
XmnI GAANNNNTTC 5 cut(s) 134, 186, 675, 774, 1363
ZrmI AGTACT 1 cut(s) 1021
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.