Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001478

Physical Location & Seq

Genomic Coordinates Reverse (-)

25923158 .. 25924087

Gene Structure 930 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG255700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGTTCCGGGACTGGTTTCGTTTCGAGAAGAAGAAGAGCTTTCAGGGACTTCCAAGATGATCAATAAGACAACAGAAGGAGGTATCCGAAAACTTACCAGAGGTGACTACTTCACATATCTAAAGGCAGTAAGGGACGTACTTGAAGACGAAGAGAAAATCTACCACGACTTCACTCAACTCCTGAAAGACTATAGTACCCAAAGACTTGATCTTGAAAGTGTGATAGATATGGTGAAAATTTTATTTGAAGGGCATCCAGATTTACTAATGGGTTTCAATACCTTCTTGCCAAAGGGATATGAAATCACCATCACACCAACCACTCTTGATTTCGTATCCGAAGAAGCTCTCACTTTTGTGAAAAGGGTAAAGGCACGATTTCAAGATGAATATCATGTTTATCTATCTTTTATTGAAATCTTAAAAGGTGAAAACAAGTCCAGAATTTTCCCAAAGGTTGCAGCACTTTTCCGAGATCACCCAGACTTGATTGATGAATTCACTCACTTTCTTCCAAGTGAACCTTCCTGTTCTATTGACCTCTCTAACTGTGAGACTTGCACTCCAAGTTACCATGTTTTGCCAGAGGATTACCCGATTCCTGCTGCTACCCGAAGAACATTGCTTGATTCTCAAGTACTGAATGATCGAGTCTGCATCACTCCTTCAGCTGCTTCCTGTTCAAGAGGAATACACAAAAGCCGATGTGAGCAGAGCCTATTTCAGTGTGAAAATGACATGTTCGAACTTGATATGTTGTTAATTTCTGTGAATTCAACGATAGGGAGTGTGAAACAGCTAATACAGAAGATTGAAAACAATAGTATTAGTGCATCAATTTGTCTTGAAGATCACTTGACGGTTCTCAATCTGAGGTGCATTGAGAGACTGTATGGTAAACAAGGGCTTAAGTGGTGGACCTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000785 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0098732 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

309

Amino Acids

35.42

Weight (kDa)

5.21

Isoelectric Point (pI)

44.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAH	PF02671	54 - 97	1.4e-14	Paired amphipathic helix repeat
PAH	PF02671	133 - 172	8.2e-07	Paired amphipathic helix repeat
Sin3_corepress	PF08295	187 - 276	2.9e-19	Sin3 family co-repressor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23810 AT1G24210 AT1G24220 AT1G24220 AT1G24230 AT1G24250 AT1G27240 AT1G27260 AT1G27270 AT1G27280
fragaria_vesca	FvH4_3g01921 FvH4_3g01930 FvH4_5g11770 FvH4_5g22630
malus_domestica	MD08G1247800.v1.1
pyrus_communis	pycom08g21470 pycom15g39040
rosa_chinensis	RchiOBHm_Chr5g0002831 RchiOBHm_Chr5g0002841
rosa_laevigata	RLG00000003026 RLG00000003029 RLG00000031063 RLG00000031064
rosa_multiflora	Rmu_co8115592.1_g000001 Rmu_co8158784.1_g000001 Rmu_sc0012670.1_g000008 Rmu_sc0012670.1_g000009 Rmu_sc0013603.1_g000011 Rmu_sc0013603.1_g000012
rosa_roxburghii	Rroxscaffold_1G00073010 Rroxscaffold_1G00073020 Rroxscaffold_3G00248150
rosa_rugosa	Rorug04G0400000 Rorug04G0400100
rosa_samantha	Rh5AG022900 Rh5BG025500 Rh5BG025600 Rh5CG025400 Rh5CG025500 Rh5DG024000 Rh5DG024100 Rh7AG255700 Rh7AG256500 Rh7BG250100 Rh7CG272100 Rh7CG272900 Rh7CG273000 Rh7DG262900
rosa_wichuraiana	Rw5G002120 Rw5G002140 Rw7G021870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	4 cut(s)	240, 447, 500, 775
AcuI	CTGAAG	1 cut(s)	654
AfaI	GTAC	3 cut(s)	141, 199, 642
AflII	CTTAAG	1 cut(s)	911
AflIII	ACRYGT	1 cut(s)	741
AjuI	GAANNNNNNNTTGG	2 cut(s)	511, 543
AleI	CACNNNNGTG	1 cut(s)	359
AluBI	AGCT	4 cut(s)	40, 350, 674, 802
AluI	AGCT	4 cut(s)	40, 350, 674, 802
Alw26I	GTCTC	2 cut(s)	551, 883
ApeKI	GCWGC	3 cut(s)	464, 608, 674
ApoI	RAATTY	4 cut(s)	240, 447, 500, 775
AspS9I	GGNCC	1 cut(s)	921
AsuC2I	CCSGG	1 cut(s)	9
AsuHPI	GGTGA	5 cut(s)	116, 247, 301, 443, 473
AsuII	TTCGAA	1 cut(s)	747
AvaII	GGWCC	1 cut(s)	921
BaeI	ACNNNNGTAYC	2 cut(s)	181, 214
BbsI	GAAGAC	1 cut(s)	153
BbvI	GCAGC	3 cut(s)	476, 595, 661
BccI	CCATC	1 cut(s)	320
BciVI	GTATCC	2 cut(s)	95, 349
BclI	TGATCA	1 cut(s)	60
BcnI	CCSGG	1 cut(s)	9
BcoDI	GTCTC	2 cut(s)	551, 883
BfmI	CTRYAG	1 cut(s)	193
BfrI	CTTAAG	1 cut(s)	911
BfuI	GTATCC	2 cut(s)	95, 349
BisI	GCNGC	3 cut(s)	465, 609, 675
BlsI	GCNGC	3 cut(s)	466, 610, 676
BmcAI	AGTACT	1 cut(s)	642
Bme1390I	CCNGG	1 cut(s)	9
Bme18I	GGWCC	1 cut(s)	921
BmgT120I	GGNCC	1 cut(s)	921
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	9
BmsI	GCATC	3 cut(s)	265, 669, 845
BpiI	GAAGAC	1 cut(s)	153
Bpu14I	TTCGAA	1 cut(s)	747
BpuEI	CTTGAG	1 cut(s)	621
BpuMI	CCSGG	1 cut(s)	9
BsaBI	GATNNNNATC	1 cut(s)	393
BsaXI	ACNNNNNCTCC	2 cut(s)	550, 580
Bse1I	ACTGG	1 cut(s)	18
Bse3DI	GCAATG	1 cut(s)	623
Bse8I	GATNNNNATC	1 cut(s)	393
BseGI	GGATG	1 cut(s)	256
BseJI	GATNNNNATC	1 cut(s)	393
BseMI	GCAATG	1 cut(s)	623
BseMII	CTCAG	1 cut(s)	866
BseNI	ACTGG	1 cut(s)	18
BseXI	GCAGC	3 cut(s)	476, 595, 661
BsiSI	CCGG	1 cut(s)	8
BslFI	GGGAC	3 cut(s)	24, 61, 149
BsmAI	GTCTC	2 cut(s)	551, 883
BsmFI	GGGAC	3 cut(s)	24, 61, 149
Bsp119I	TTCGAA	1 cut(s)	747
Bsp143I	GATC	5 cut(s)	60, 211, 478, 649, 853
BspCNI	CTCAG	1 cut(s)	867
BspLI	GGNNCC	1 cut(s)	6
BspQI	GCTCTTC	1 cut(s)	30
BspT104I	TTCGAA	1 cut(s)	747
BspTI	CTTAAG	1 cut(s)	911
BsrDI	GCAATG	1 cut(s)	623
BsrI	ACTGG	1 cut(s)	18
BssMI	GATC	5 cut(s)	60, 211, 478, 649, 853
Bst4CI	ACNGT	3 cut(s)	554, 865, 894
Bst6I	CTCTTC	2 cut(s)	30, 147
BstAFI	CTTAAG	1 cut(s)	911
BstBI	TTCGAA	1 cut(s)	747
BstDEI	CTNAG	1 cut(s)	875
BstF5I	GGATG	1 cut(s)	256
BstKTI	GATC	5 cut(s)	63, 214, 481, 652, 856
BstMAI	GTCTC	2 cut(s)	551, 883
BstMBI	GATC	5 cut(s)	60, 211, 478, 649, 853
BstNSI	RCATGY	1 cut(s)	745
BstSCI	CCNGG	1 cut(s)	7
BstSFI	CTRYAG	1 cut(s)	193
BstV1I	GCAGC	3 cut(s)	476, 595, 661
BstV2I	GAAGAC	1 cut(s)	153
BsuI	GTATCC	2 cut(s)	95, 349
BtsCI	GGATG	1 cut(s)	256
BtsIMutI	CAGTG	1 cut(s)	734
Cfr13I	GGNCC	1 cut(s)	921
Csp6I	GTAC	3 cut(s)	140, 198, 641
CviAII	CATG	3 cut(s)	398, 578, 742
CviJI	RGCY	7 cut(s)	40, 350, 674, 705, 720, 802, 910
CviKI_1	RGCY	7 cut(s)	40, 350, 674, 705, 720, 802, 910
CviQI	GTAC	3 cut(s)	140, 198, 641
DdeI	CTNAG	1 cut(s)	875
DpnI	GATC	5 cut(s)	62, 213, 480, 651, 855
DpnII	GATC	5 cut(s)	60, 211, 478, 649, 853
Eam1104I	CTCTTC	2 cut(s)	30, 147
EarI	CTCTTC	2 cut(s)	30, 147
Eco47I	GGWCC	1 cut(s)	921
Eco57I	CTGAAG	1 cut(s)	654
EcoRI	GAATTC	2 cut(s)	500, 775
FaeI	CATG	3 cut(s)	401, 581, 745
FaiI	YATR	9 cut(s)	118, 195, 233, 303, 399, 579, 743, 758, 897
FalI	AAGNNNNNCTT	4 cut(s)	24, 56, 511, 543
FaqI	GGGAC	3 cut(s)	24, 61, 149
FatI	CATG	3 cut(s)	397, 577, 741
FbaI	TGATCA	1 cut(s)	60
Fnu4HI	GCNGC	3 cut(s)	465, 609, 675
FokI	GGATG	1 cut(s)	243
Fsp4HI	GCNGC	3 cut(s)	465, 609, 675
GluI	GCNGC	3 cut(s)	465, 609, 675
HapII	CCGG	1 cut(s)	8
Hin1II	CATG	3 cut(s)	401, 581, 745
HinfI	GANTC	3 cut(s)	601, 632, 654
HpaII	CCGG	1 cut(s)	8
HphI	GGTGA	5 cut(s)	116, 247, 301, 443, 473
Hpy166II	GTNNAC	3 cut(s)	524, 902, 921
Hpy188I	TCNGA	4 cut(s)	89, 343, 476, 876
Hpy188III	TCNNGA	9 cut(s)	26, 184, 215, 260, 329, 386, 444, 687, 848
Hpy8I	GTNNAC	3 cut(s)	524, 902, 921
HpyAV	CCTTC	5 cut(s)	71, 245, 295, 537, 678
HpyCH4III	ACNGT	3 cut(s)	554, 865, 894
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	5 cut(s)	464, 564, 660, 836, 882
HpyF3I	CTNAG	1 cut(s)	875
HpySE526I	ACGT	1 cut(s)	138
Hsp92II	CATG	3 cut(s)	401, 581, 745
Ksp22I	TGATCA	1 cut(s)	60
Kzo9I	GATC	5 cut(s)	60, 211, 478, 649, 853
LguI	GCTCTTC	1 cut(s)	30
Lsp1109I	GCAGC	3 cut(s)	476, 595, 661
LweI	GCATC	3 cut(s)	265, 669, 845
MaeII	ACGT	1 cut(s)	138
MaeIII	GTNAC	2 cut(s)	104, 572
MalI	GATC	5 cut(s)	62, 213, 480, 651, 855
MboI	GATC	5 cut(s)	60, 211, 478, 649, 853
MluCI	AATT	6 cut(s)	240, 447, 500, 765, 775, 840
MlyI	GAGTC	1 cut(s)	663
MnlI	CCTC	6 cut(s)	74, 95, 554, 583, 683, 870
MseI	TTAA	3 cut(s)	425, 764, 912
MslI	CAYNNNNRTG	1 cut(s)	359
MspA1I	CMGCKG	1 cut(s)	674
MspCI	CTTAAG	1 cut(s)	911
MspI	CCGG	1 cut(s)	8
MspR9I	CCNGG	1 cut(s)	9
NciI	CCSGG	1 cut(s)	9
NdeII	GATC	5 cut(s)	60, 211, 478, 649, 853
NlaIII	CATG	3 cut(s)	401, 581, 745
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	104
NspI	RCATGY	1 cut(s)	745
NspV	TTCGAA	1 cut(s)	747
OliI	CACNNNNGTG	1 cut(s)	359
PciI	ACATGT	1 cut(s)	741
PciSI	GCTCTTC	1 cut(s)	30
PfeI	GAWTC	2 cut(s)	601, 632
PfoI	TCCNGGA	1 cut(s)	7
PkrI	GCNGC	3 cut(s)	466, 610, 676
PleI	GAGTC	1 cut(s)	662
PpsI	GAGTC	1 cut(s)	662
PscI	ACATGT	1 cut(s)	741
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	921
PvuII	CAGCTG	1 cut(s)	674
RsaI	GTAC	3 cut(s)	141, 199, 642
RsaNI	GTAC	3 cut(s)	140, 198, 641
RseI	CAYNNNNRTG	1 cut(s)	359
SapI	GCTCTTC	1 cut(s)	30
SaqAI	TTAA	3 cut(s)	425, 764, 912
SatI	GCNGC	3 cut(s)	465, 609, 675
Sau3AI	GATC	5 cut(s)	60, 211, 478, 649, 853
Sau96I	GGNCC	1 cut(s)	921
ScaI	AGTACT	1 cut(s)	642
SchI	GAGTC	1 cut(s)	663
ScrFI	CCNGG	1 cut(s)	9
SfaNI	GCATC	3 cut(s)	265, 669, 845
SfcI	CTRYAG	1 cut(s)	193
SfuI	TTCGAA	1 cut(s)	747
SinI	GGWCC	1 cut(s)	921
SmiMI	CAYNNNNRTG	1 cut(s)	359
SmlI	CTYRAG	2 cut(s)	636, 911
SmoI	CTYRAG	2 cut(s)	636, 911
Sse9I	AATT	6 cut(s)	240, 447, 500, 765, 775, 840
StyD4I	CCNGG	1 cut(s)	7
TaaI	ACNGT	3 cut(s)	554, 865, 894
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	3 cut(s)	25, 652, 747
TasI	AATT	6 cut(s)	240, 447, 500, 765, 775, 840
TatI	WGTACW	1 cut(s)	640
TfiI	GAWTC	2 cut(s)	601, 632
Tru1I	TTAA	3 cut(s)	425, 764, 912
Tru9I	TTAA	3 cut(s)	425, 764, 912
TscAI	CASTG	1 cut(s)	734
TseFI	GTSAC	1 cut(s)	104
TseI	GCWGC	3 cut(s)	464, 608, 674
Tsp45I	GTSAC	1 cut(s)	104
TspDTI	ATGAA	3 cut(s)	318, 405, 513
TspRI	CASTG	1 cut(s)	734
Vha464I	CTTAAG	1 cut(s)	911
VpaK11BI	GGWCC	1 cut(s)	921
XapI	RAATTY	4 cut(s)	240, 447, 500, 775
XceI	RCATGY	1 cut(s)	745
ZrmI	AGTACT	1 cut(s)	642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.