Paired amphipathic helix protein Sin3-like
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G23810 AT1G24210 AT1G24220 AT1G24220 AT1G24230 AT1G24250 AT1G27240 AT1G27260 AT1G27270 AT1G27280 |
| fragaria_vesca | FvH4_3g01921 FvH4_3g01930 FvH4_5g11770 FvH4_5g22630 |
| malus_domestica | MD08G1247800.v1.1 |
| pyrus_communis | pycom08g21470 pycom15g39040 |
| rosa_chinensis | RchiOBHm_Chr5g0002831 RchiOBHm_Chr5g0002841 |
| rosa_laevigata | RLG00000003026 RLG00000003029 RLG00000031063 RLG00000031064 |
| rosa_multiflora | Rmu_co8115592.1_g000001 Rmu_co8158784.1_g000001 Rmu_sc0012670.1_g000008 Rmu_sc0012670.1_g000009 Rmu_sc0013603.1_g000011 Rmu_sc0013603.1_g000012 |
| rosa_roxburghii | Rroxscaffold_1G00073010 Rroxscaffold_1G00073020 Rroxscaffold_3G00248150 |
| rosa_rugosa | Rorug04G0400000 Rorug04G0400100 |
| rosa_samantha | Rh5AG022900 Rh5BG025500 Rh5BG025600 Rh5CG025400 Rh5CG025500 Rh5DG024000 Rh5DG024100 Rh7AG255700 Rh7AG256500 Rh7BG250100 Rh7CG272100 Rh7CG272900 Rh7CG273000 Rh7DG262900 |
| rosa_wichuraiana | Rw5G002120 Rw5G002140 Rw7G021870 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 195 |
| AccI | GTMKAC | 1 cut(s) | 843 |
| AccII | CGCG | 1 cut(s) | 417 |
| AciI | CCGC | 3 cut(s) | 622, 1125, 1286 |
| AclWI | GGATC | 1 cut(s) | 568 |
| AcoI | YGGCCR | 1 cut(s) | 1122 |
| AcsI | RAATTY | 5 cut(s) | 71, 224, 907, 1117, 1210 |
| AcuI | CTGAAG | 3 cut(s) | 737, 849, 972 |
| AcyI | GRCGYC | 1 cut(s) | 196 |
| AfaI | GTAC | 2 cut(s) | 538, 997 |
| AfeI | AGCGCT | 1 cut(s) | 62 |
| AflIII | ACRYGT | 1 cut(s) | 239 |
| AgsI | TTSAA | 8 cut(s) | 106, 220, 510, 1014, 1190, 1270, 1283, 1315 |
| AhlI | ACTAGT | 2 cut(s) | 986, 1001 |
| AjnI | CCWGG | 1 cut(s) | 198 |
| AluBI | AGCT | 5 cut(s) | 356, 751, 888, 943, 947 |
| AluI | AGCT | 5 cut(s) | 356, 751, 888, 943, 947 |
| AlwI | GGATC | 1 cut(s) | 568 |
| Aor51HI | AGCGCT | 1 cut(s) | 62 |
| AoxI | GGCC | 3 cut(s) | 30, 787, 1122 |
| ApeKI | GCWGC | 3 cut(s) | 36, 309, 1048 |
| ApoI | RAATTY | 5 cut(s) | 71, 224, 907, 1117, 1210 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 750 |
| AspA2I | CCTAGG | 2 cut(s) | 275, 491 |
| AspLEI | GCGC | 4 cut(s) | 20, 63, 198, 309 |
| AsuHPI | GGTGA | 5 cut(s) | 437, 474, 656, 708, 805 |
| AsuII | TTCGAA | 1 cut(s) | 373 |
| AsuNHI | GCTAGC | 1 cut(s) | 943 |
| AvrII | CCTAGG | 2 cut(s) | 275, 491 |
| BanI | GGYRCC | 1 cut(s) | 195 |
| BanII | GRGCYC | 1 cut(s) | 1372 |
| BbvI | GCAGC | 3 cut(s) | 48, 321, 1060 |
| BccI | CCATC | 4 cut(s) | 169, 329, 632, 857 |
| BceAI | ACGGC | 1 cut(s) | 1054 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 302, 336 |
| BciT130I | CCWGG | 1 cut(s) | 200 |
| BcuI | ACTAGT | 2 cut(s) | 986, 1001 |
| BfaI | CTAG | 8 cut(s) | 276, 324, 492, 837, 944, 987, 993, 1002 |
| BfmI | CTRYAG | 1 cut(s) | 564 |
| BfoI | RGCGCY | 2 cut(s) | 64, 199 |
| BisI | GCNGC | 4 cut(s) | 37, 310, 1049, 1125 |
| BlnI | CCTAGG | 2 cut(s) | 275, 491 |
| BlsI | GCNGC | 4 cut(s) | 38, 311, 1050, 1126 |
| BmcAI | AGTACT | 1 cut(s) | 997 |
| Bme1390I | CCNGG | 1 cut(s) | 200 |
| BmiI | GGNNCC | 2 cut(s) | 197, 620 |
| BmrFI | CCNGG | 1 cut(s) | 200 |
| BmrI | ACTGGG | 2 cut(s) | 811, 1081 |
| BmsI | GCATC | 1 cut(s) | 724 |
| BmtI | GCTAGC | 1 cut(s) | 947 |
| BmuI | ACTGGG | 2 cut(s) | 811, 1081 |
| BoxI | GACNNNNGTC | 1 cut(s) | 441 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 47, 79 |
| Bpu14I | TTCGAA | 1 cut(s) | 373 |
| BpuEI | CTTGAG | 1 cut(s) | 106 |
| Bsa29I | ATCGAT | 1 cut(s) | 732 |
| BsaHI | GRCGYC | 1 cut(s) | 196 |
| BsaJI | CCNNGG | 3 cut(s) | 98, 275, 491 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 865, 895 |
| Bse1I | ACTGG | 2 cut(s) | 817, 1076 |
| BseBI | CCWGG | 1 cut(s) | 200 |
| BseCI | ATCGAT | 1 cut(s) | 732 |
| BseDI | CCNNGG | 3 cut(s) | 98, 275, 491 |
| BseMII | CTCAG | 2 cut(s) | 393, 1374 |
| BseNI | ACTGG | 2 cut(s) | 817, 1076 |
| BseRI | GAGGAG | 1 cut(s) | 1032 |
| BseX3I | CGGCCG | 1 cut(s) | 1122 |
| BseXI | GCAGC | 3 cut(s) | 48, 321, 1060 |
| Bsh1236I | CGCG | 1 cut(s) | 417 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1125 |
| BshFI | GGCC | 3 cut(s) | 32, 789, 1124 |
| BshNI | GGYRCC | 1 cut(s) | 195 |
| BshVI | ATCGAT | 1 cut(s) | 732 |
| BsiEI | CGRYCG | 1 cut(s) | 1125 |
| BslFI | GGGAC | 1 cut(s) | 474 |
| BsmFI | GGGAC | 1 cut(s) | 474 |
| BsnI | GGCC | 3 cut(s) | 32, 789, 1124 |
| Bsp119I | TTCGAA | 1 cut(s) | 373 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1372 |
| Bsp143I | GATC | 5 cut(s) | 560, 935, 964, 1155, 1351 |
| Bsp19I | CCATGG | 1 cut(s) | 98 |
| Bsp68I | TCGCGA | 1 cut(s) | 417 |
| BspACI | CCGC | 3 cut(s) | 622, 1125, 1286 |
| BspANI | GGCC | 3 cut(s) | 32, 789, 1124 |
| BspCNI | CTCAG | 2 cut(s) | 394, 1375 |
| BspDI | ATCGAT | 1 cut(s) | 732 |
| BspFNI | CGCG | 1 cut(s) | 417 |
| BspHI | TCATGA | 1 cut(s) | 123 |
| BspLI | GGNNCC | 2 cut(s) | 197, 620 |
| BspOI | GCTAGC | 1 cut(s) | 947 |
| BspPI | GGATC | 1 cut(s) | 568 |
| BspQI | GCTCTTC | 2 cut(s) | 8, 741 |
| BspT104I | TTCGAA | 1 cut(s) | 373 |
| BspT107I | GGYRCC | 1 cut(s) | 195 |
| BsrI | ACTGG | 2 cut(s) | 817, 1076 |
| BssECI | CCNNGG | 3 cut(s) | 98, 275, 491 |
| BssMI | GATC | 5 cut(s) | 560, 935, 964, 1155, 1351 |
| BssNI | GRCGYC | 1 cut(s) | 196 |
| BssT1I | CCWWGG | 3 cut(s) | 98, 275, 491 |
| Bst2UI | CCWGG | 1 cut(s) | 200 |
| Bst4CI | ACNGT | 5 cut(s) | 350, 502, 893, 1311, 1347 |
| Bst6I | CTCTTC | 4 cut(s) | 8, 21, 741, 1101 |
| BstACI | GRCGYC | 1 cut(s) | 196 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 876 |
| BstBI | TTCGAA | 1 cut(s) | 373 |
| BstC8I | GCNNGC | 2 cut(s) | 34, 945 |
| BstDEI | CTNAG | 3 cut(s) | 366, 402, 1383 |
| BstDSI | CCRYGG | 1 cut(s) | 98 |
| BstEII | GGTNACC | 1 cut(s) | 443 |
| BstFNI | CGCG | 1 cut(s) | 417 |
| BstH2I | RGCGCY | 2 cut(s) | 64, 199 |
| BstHHI | GCGC | 4 cut(s) | 20, 63, 198, 309 |
| BstKTI | GATC | 5 cut(s) | 563, 938, 967, 1158, 1354 |
| BstMBI | GATC | 5 cut(s) | 560, 935, 964, 1155, 1351 |
| BstMCI | CGRYCG | 1 cut(s) | 1125 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 876, 885, 1038, 1054 |
| BstNI | CCWGG | 1 cut(s) | 200 |
| BstNSI | RCATGY | 1 cut(s) | 243 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 441 |
| BstPI | GGTNACC | 1 cut(s) | 443 |
| BstSCI | CCNGG | 1 cut(s) | 198 |
| BstSFI | CTRYAG | 1 cut(s) | 564 |
| BstUI | CGCG | 1 cut(s) | 417 |
| BstV1I | GCAGC | 3 cut(s) | 48, 321, 1060 |
| BstX2I | RGATCY | 1 cut(s) | 560 |
| BstYI | RGATCY | 1 cut(s) | 560 |
| BstZI | CGGCCG | 1 cut(s) | 1122 |
| Bsu15I | ATCGAT | 1 cut(s) | 732 |
| BsuRI | GGCC | 3 cut(s) | 32, 789, 1124 |
| BsuTUI | ATCGAT | 1 cut(s) | 732 |
| BtgI | CCRYGG | 1 cut(s) | 98 |
| BtgZI | GCGATG | 1 cut(s) | 327 |
| BtsIMutI | CAGTG | 1 cut(s) | 540 |
| BtuMI | TCGCGA | 1 cut(s) | 417 |
| Cac8I | GCNNGC | 2 cut(s) | 34, 945 |
| CciI | TCATGA | 1 cut(s) | 123 |
| CfoI | GCGC | 4 cut(s) | 20, 63, 198, 309 |
| ClaI | ATCGAT | 1 cut(s) | 732 |
| CseI | GACGC | 3 cut(s) | 36, 563, 1038 |
| Csp6I | GTAC | 2 cut(s) | 537, 996 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 147, 182 |
| CviAII | CATG | 8 cut(s) | 51, 99, 124, 240, 449, 1052, 1094, 1255 |
| CviJI | RGCY | 9 cut(s) | 32, 356, 751, 789, 888, 943, 947, 1124, 1370 |
| CviKI_1 | RGCY | 9 cut(s) | 32, 356, 751, 789, 888, 943, 947, 1124, 1370 |
| CviQI | GTAC | 2 cut(s) | 537, 996 |
| DdeI | CTNAG | 3 cut(s) | 366, 402, 1383 |
| DinI | GGCGCC | 1 cut(s) | 197 |
| DpnI | GATC | 5 cut(s) | 562, 937, 966, 1157, 1353 |
| DpnII | GATC | 5 cut(s) | 560, 935, 964, 1155, 1351 |
| DraI | TTTAAA | 1 cut(s) | 190 |
| EaeI | YGGCCR | 1 cut(s) | 1122 |
| EagI | CGGCCG | 1 cut(s) | 1122 |
| Eam1104I | CTCTTC | 4 cut(s) | 8, 21, 741, 1101 |
| EarI | CTCTTC | 4 cut(s) | 8, 21, 741, 1101 |
| EclXI | CGGCCG | 1 cut(s) | 1122 |
| Eco130I | CCWWGG | 3 cut(s) | 98, 275, 491 |
| Eco24I | GRGCYC | 1 cut(s) | 1372 |
| Eco47III | AGCGCT | 1 cut(s) | 62 |
| Eco52I | CGGCCG | 1 cut(s) | 1122 |
| Eco57I | CTGAAG | 3 cut(s) | 737, 849, 972 |
| Eco91I | GGTNACC | 1 cut(s) | 443 |
| EcoO65I | GGTNACC | 1 cut(s) | 443 |
| EcoRI | GAATTC | 1 cut(s) | 1117 |
| EcoRII | CCWGG | 1 cut(s) | 198 |
| EcoT14I | CCWWGG | 3 cut(s) | 98, 275, 491 |
| EcoT38I | GRGCYC | 1 cut(s) | 1372 |
| EgeI | GGCGCC | 1 cut(s) | 197 |
| EheI | GGCGCC | 1 cut(s) | 197 |
| ErhI | CCWWGG | 3 cut(s) | 98, 275, 491 |
| FaeI | CATG | 8 cut(s) | 54, 102, 127, 243, 452, 1055, 1097, 1258 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 735, 767 |
| FaqI | GGGAC | 1 cut(s) | 474 |
| FatI | CATG | 8 cut(s) | 50, 98, 123, 239, 448, 1051, 1093, 1254 |
| FblI | GTMKAC | 1 cut(s) | 843 |
| Fnu4HI | GCNGC | 4 cut(s) | 37, 310, 1049, 1125 |
| FriOI | GRGCYC | 1 cut(s) | 1372 |
| Fsp4HI | GCNGC | 4 cut(s) | 37, 310, 1049, 1125 |
| FspBI | CTAG | 8 cut(s) | 276, 324, 492, 837, 944, 987, 993, 1002 |
| GlaI | GCGC | 4 cut(s) | 19, 62, 197, 308 |
| GluI | GCNGC | 4 cut(s) | 37, 310, 1049, 1125 |
| HaeII | RGCGCY | 2 cut(s) | 64, 199 |
| HaeIII | GGCC | 3 cut(s) | 32, 789, 1124 |
| HgaI | GACGC | 3 cut(s) | 36, 563, 1038 |
| HhaI | GCGC | 4 cut(s) | 20, 63, 198, 309 |
| Hin1I | GRCGYC | 1 cut(s) | 196 |
| Hin1II | CATG | 8 cut(s) | 54, 102, 127, 243, 452, 1055, 1097, 1258 |
| Hin6I | GCGC | 4 cut(s) | 18, 61, 196, 307 |
| HinP1I | GCGC | 4 cut(s) | 18, 61, 196, 307 |
| HincII | GTYRAC | 2 cut(s) | 844, 982 |
| HindII | GTYRAC | 2 cut(s) | 844, 982 |
| HinfI | GANTC | 8 cut(s) | 80, 362, 370, 467, 569, 840, 845, 1168 |
| HpaI | GTTAAC | 1 cut(s) | 982 |
| HphI | GGTGA | 5 cut(s) | 437, 474, 656, 708, 805 |
| Hpy166II | GTNNAC | 5 cut(s) | 601, 813, 844, 982, 1025 |
| Hpy188I | TCNGA | 7 cut(s) | 117, 582, 756, 796, 952, 1173, 1351 |
| Hpy188III | TCNNGA | 5 cut(s) | 124, 416, 1014, 1187, 1382 |
| Hpy8I | GTNNAC | 5 cut(s) | 601, 813, 844, 982, 1025 |
| Hpy99I | CGWCG | 2 cut(s) | 1032, 1177 |
| HpyAV | CCTTC | 4 cut(s) | 402, 434, 760, 779 |
| HpyCH4III | ACNGT | 5 cut(s) | 350, 502, 893, 1311, 1347 |
| HpyCH4V | TGCA | 5 cut(s) | 699, 773, 870, 879, 1221 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 876, 885, 1038, 1054 |
| HpyF3I | CTNAG | 3 cut(s) | 366, 402, 1383 |
| Hsp92I | GRCGYC | 1 cut(s) | 196 |
| Hsp92II | CATG | 8 cut(s) | 54, 102, 127, 243, 452, 1055, 1097, 1258 |
| HspAI | GCGC | 4 cut(s) | 18, 61, 196, 307 |
| KasI | GGCGCC | 1 cut(s) | 195 |
| KspAI | GTTAAC | 1 cut(s) | 982 |
| Kzo9I | GATC | 5 cut(s) | 560, 935, 964, 1155, 1351 |
| LguI | GCTCTTC | 2 cut(s) | 8, 741 |
| LmnI | GCTCC | 2 cut(s) | 68, 353 |
| Lsp1109I | GCAGC | 3 cut(s) | 48, 321, 1060 |
| LweI | GCATC | 1 cut(s) | 724 |
| MaeI | CTAG | 8 cut(s) | 276, 324, 492, 837, 944, 987, 993, 1002 |
| MaeIII | GTNAC | 5 cut(s) | 434, 443, 480, 644, 1250 |
| MalI | GATC | 5 cut(s) | 562, 937, 966, 1157, 1353 |
| MboI | GATC | 5 cut(s) | 560, 935, 964, 1155, 1351 |
| MflI | RGATCY | 1 cut(s) | 560 |
| MhlI | GDGCHC | 1 cut(s) | 1372 |
| Mly113I | GGCGCC | 1 cut(s) | 196 |
| MlyI | GAGTC | 5 cut(s) | 74, 356, 839, 849, 1177 |
| MmeI | TCCRAC | 2 cut(s) | 1083, 1196 |
| MroXI | GAANNNNTTC | 1 cut(s) | 750 |
| MseI | TTAA | 6 cut(s) | 189, 800, 824, 959, 981, 1304 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1205 |
| MspR9I | CCNGG | 1 cut(s) | 200 |
| MvaI | CCWGG | 1 cut(s) | 200 |
| MvnI | CGCG | 1 cut(s) | 417 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 876, 885, 1038, 1054 |
| NarI | GGCGCC | 1 cut(s) | 196 |
| NcoI | CCATGG | 1 cut(s) | 98 |
| NdeII | GATC | 5 cut(s) | 560, 935, 964, 1155, 1351 |
| NheI | GCTAGC | 1 cut(s) | 943 |
| NlaIII | CATG | 8 cut(s) | 54, 102, 127, 243, 452, 1055, 1097, 1258 |
| NlaIV | GGNNCC | 2 cut(s) | 197, 620 |
| NmuCI | GTSAC | 5 cut(s) | 434, 443, 480, 644, 1250 |
| NruI | TCGCGA | 1 cut(s) | 417 |
| NspI | RCATGY | 1 cut(s) | 243 |
| NspV | TTCGAA | 1 cut(s) | 373 |
| PagI | TCATGA | 1 cut(s) | 123 |
| PciI | ACATGT | 1 cut(s) | 239 |
| PciSI | GCTCTTC | 2 cut(s) | 8, 741 |
| PdmI | GAANNNNTTC | 1 cut(s) | 750 |
| PfeI | GAWTC | 3 cut(s) | 370, 467, 569 |
| PkrI | GCNGC | 4 cut(s) | 38, 311, 1050, 1126 |
| PleI | GAGTC | 5 cut(s) | 74, 356, 839, 848, 1176 |
| PluTI | GGCGCC | 1 cut(s) | 199 |
| PpsI | GAGTC | 5 cut(s) | 74, 356, 839, 848, 1176 |
| PscI | ACATGT | 1 cut(s) | 239 |
| PshAI | GACNNNNGTC | 1 cut(s) | 441 |
| Psp6I | CCWGG | 1 cut(s) | 198 |
| PspEI | GGTNACC | 1 cut(s) | 443 |
| PspGI | CCWGG | 1 cut(s) | 198 |
| PspN4I | GGNNCC | 2 cut(s) | 197, 620 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 988, 1020 |
| PsuI | RGATCY | 1 cut(s) | 560 |
| RruI | TCGCGA | 1 cut(s) | 417 |
| RsaI | GTAC | 2 cut(s) | 538, 997 |
| RsaNI | GTAC | 2 cut(s) | 537, 996 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1205 |
| SalI | GTCGAC | 1 cut(s) | 842 |
| SapI | GCTCTTC | 2 cut(s) | 8, 741 |
| SaqAI | TTAA | 6 cut(s) | 189, 800, 824, 959, 981, 1304 |
| SatI | GCNGC | 4 cut(s) | 37, 310, 1049, 1125 |
| Sau3AI | GATC | 5 cut(s) | 560, 935, 964, 1155, 1351 |
| ScaI | AGTACT | 1 cut(s) | 997 |
| SchI | GAGTC | 5 cut(s) | 74, 356, 839, 849, 1177 |
| ScrFI | CCNGG | 1 cut(s) | 200 |
| SduI | GDGCHC | 1 cut(s) | 1372 |
| SfaNI | GCATC | 1 cut(s) | 724 |
| SfcI | CTRYAG | 1 cut(s) | 564 |
| SfoI | GGCGCC | 1 cut(s) | 197 |
| SfuI | TTCGAA | 1 cut(s) | 373 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1205 |
| SmlI | CTYRAG | 1 cut(s) | 85 |
| SmoI | CTYRAG | 1 cut(s) | 85 |
| SpeI | ACTAGT | 2 cut(s) | 986, 1001 |
| SsiI | CCGC | 3 cut(s) | 622, 1125, 1286 |
| SspDI | GGCGCC | 1 cut(s) | 195 |
| SspI | AATATT | 1 cut(s) | 1279 |
| SspMI | CTAG | 8 cut(s) | 276, 324, 492, 837, 944, 987, 993, 1002 |
| StyD4I | CCNGG | 1 cut(s) | 198 |
| StyI | CCWWGG | 3 cut(s) | 98, 275, 491 |
| TaaI | ACNGT | 5 cut(s) | 350, 502, 893, 1311, 1347 |
| TaqI | TCGA | 7 cut(s) | 69, 150, 373, 609, 732, 843, 938 |
| TatI | WGTACW | 1 cut(s) | 995 |
| TauI | GCSGC | 1 cut(s) | 1127 |
| TfiI | GAWTC | 3 cut(s) | 370, 467, 569 |
| Tru1I | TTAA | 6 cut(s) | 189, 800, 824, 959, 981, 1304 |
| Tru9I | TTAA | 6 cut(s) | 189, 800, 824, 959, 981, 1304 |
| TscAI | CASTG | 1 cut(s) | 547 |
| TseFI | GTSAC | 5 cut(s) | 434, 443, 480, 644, 1250 |
| TseI | GCWGC | 3 cut(s) | 36, 309, 1048 |
| Tsp45I | GTSAC | 5 cut(s) | 434, 443, 480, 644, 1250 |
| TspDTI | ATGAA | 5 cut(s) | 20, 140, 756, 1104, 1223 |
| TspGWI | ACGGA | 3 cut(s) | 851, 1190, 1217 |
| TspRI | CASTG | 1 cut(s) | 547 |
| XapI | RAATTY | 5 cut(s) | 71, 224, 907, 1117, 1210 |
| XceI | RCATGY | 1 cut(s) | 243 |
| XmaJI | CCTAGG | 2 cut(s) | 275, 491 |
| XmiI | GTMKAC | 1 cut(s) | 843 |
| XmnI | GAANNNNTTC | 1 cut(s) | 750 |
| XspI | CTAG | 8 cut(s) | 276, 324, 492, 837, 944, 987, 993, 1002 |
| ZrmI | AGTACT | 1 cut(s) | 997 |