RchiOBHm_Chr5g0002831

Paired amphipathic helix protein Sin3-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
1665358 .. 1666746
1389 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28417

Sequence Viewer

Length: 1389 bp
ATGATGAAGGAGAAGAGCGCAGGAGAAGAGGCCAGCAGCACCAAAGCGTCATGGGAGAAGCGCTCCCTCGAATTTATTGACTCCTTGAGGAACTTCCCATGGTTCAAGGAGTATCAGAACCTCATGAAAGACTACAAGAACAAAGAAATCGACTTGGCAATTTTGGTGGAGAAGATGGTGGAATTGTTTAAAGGGCGCCAGGAGTTGATAGCAGGGTTCAATAAATTCTTGCCAGAAACATGTCAAATTACCCTACCAGCACCAACGCTACTACCTAGGGTTAGAATTGTTTGTCAAAAGAGGAAGCGCAGCGATGATAGTGCTAGTGATAGTGATGGTGGTATTGACGGTGGAGCTAACGACTCTAAGATTCGAAAAGTTATCAGGTGTGATTACAAGACTGAGGGAAGGTTTCGCGACAAAGATAAGGAAAGTGACGAAGGTCACCATGTTTTCTTGGGACACGAATCCCCAACTCTGTCACCAAGACCTAGGATTACAGTTCTTTCAAACAAGGCGAAGAACAATGATGATAGTACCACTGATTGTGATGACGCTGGATCTATAGATTCTAAACTTCGGAAAGTTATTGCTTTTGTGAACAAGGTCGAGCAAAGGTTCCGCAACAACAATGATGATGGTGGTGACGATGATGATACTTGTCAATCCTATATAGAGTTTTTCTTGGATATGGTCTGCAAAAGGAACAAATCATCACCCAATAGGTCTATCGATGCTGATGAAGAAGAGCTTCAGATTTACAAGAAGGTTGCAACACTTTTGGAAGGCCACTCGGACTTAATTGATGAGTTCACCCAGTTTTTAACTGAAGTGCCTAGAGTCGACTCCATCATTGATTTCCGTAAGTGCAAGACTTGCACTCCAAGCTACCGTCTTTTGCCAAAAAATTTCCCCATTCCTGCTTCTACCAAAAGATCGAAGCTAGCTTCTGAAGTATTAAATGATCGTTGGGTATGCGTTAACACTAGTCCTAGTACTACTAGTTCTACTTCAAGAGGAGGTGGACGACGCATAAACGGCAAATCGCAGCATGAGCAAGAACTATTAGACTGGGAAGAAGAAAAGTATGAACATGATATGTTGGAAGAGTATGTGAATTCGGCCGCAAATAATATCGCAACGCTAATAAAAGAGATCAAAAACGAGAGTCCGACGGAGATTTATCTTGAAGAACATCTCACGGAGATGAATTTGAGGTGCATTGAGAGATTGTATGGTCTGCGAGGGCGTGACATGGTTGATTTGTTGAAGAACAATATTCAAGCGGTTTTGCCTGTTTTATTAAGACGGTTGAAGCAAAAGCAGAAAGAACTGAAACGAAAACGGTCTGATCTAAAACAAGAGTGGGCTCGTTTATTTCCTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

462

Amino Acids

53.29

Weight (kDa)

6.47

Isoelectric Point (pI)

57.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAH PF02671 37 - 77 1.9e-08 Paired amphipathic helix repeat
Sin3_corepress PF08295 291 - 392 1.7e-19 Sin3 family co-repressor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 195
AccI GTMKAC 1 cut(s) 843
AccII CGCG 1 cut(s) 417
AciI CCGC 3 cut(s) 622, 1125, 1286
AclWI GGATC 1 cut(s) 568
AcoI YGGCCR 1 cut(s) 1122
AcsI RAATTY 5 cut(s) 71, 224, 907, 1117, 1210
AcuI CTGAAG 3 cut(s) 737, 849, 972
AcyI GRCGYC 1 cut(s) 196
AfaI GTAC 2 cut(s) 538, 997
AfeI AGCGCT 1 cut(s) 62
AflIII ACRYGT 1 cut(s) 239
AgsI TTSAA 8 cut(s) 106, 220, 510, 1014, 1190, 1270, 1283, 1315
AhlI ACTAGT 2 cut(s) 986, 1001
AjnI CCWGG 1 cut(s) 198
AluBI AGCT 5 cut(s) 356, 751, 888, 943, 947
AluI AGCT 5 cut(s) 356, 751, 888, 943, 947
AlwI GGATC 1 cut(s) 568
Aor51HI AGCGCT 1 cut(s) 62
AoxI GGCC 3 cut(s) 30, 787, 1122
ApeKI GCWGC 3 cut(s) 36, 309, 1048
ApoI RAATTY 5 cut(s) 71, 224, 907, 1117, 1210
Asp700I GAANNNNTTC 1 cut(s) 750
AspA2I CCTAGG 2 cut(s) 275, 491
AspLEI GCGC 4 cut(s) 20, 63, 198, 309
AsuHPI GGTGA 5 cut(s) 437, 474, 656, 708, 805
AsuII TTCGAA 1 cut(s) 373
AsuNHI GCTAGC 1 cut(s) 943
AvrII CCTAGG 2 cut(s) 275, 491
BanI GGYRCC 1 cut(s) 195
BanII GRGCYC 1 cut(s) 1372
BbvI GCAGC 3 cut(s) 48, 321, 1060
BccI CCATC 4 cut(s) 169, 329, 632, 857
BceAI ACGGC 1 cut(s) 1054
BcgI CGANNNNNNTGC 2 cut(s) 302, 336
BciT130I CCWGG 1 cut(s) 200
BcuI ACTAGT 2 cut(s) 986, 1001
BfaI CTAG 8 cut(s) 276, 324, 492, 837, 944, 987, 993, 1002
BfmI CTRYAG 1 cut(s) 564
BfoI RGCGCY 2 cut(s) 64, 199
BisI GCNGC 4 cut(s) 37, 310, 1049, 1125
BlnI CCTAGG 2 cut(s) 275, 491
BlsI GCNGC 4 cut(s) 38, 311, 1050, 1126
BmcAI AGTACT 1 cut(s) 997
Bme1390I CCNGG 1 cut(s) 200
BmiI GGNNCC 2 cut(s) 197, 620
BmrFI CCNGG 1 cut(s) 200
BmrI ACTGGG 2 cut(s) 811, 1081
BmsI GCATC 1 cut(s) 724
BmtI GCTAGC 1 cut(s) 947
BmuI ACTGGG 2 cut(s) 811, 1081
BoxI GACNNNNGTC 1 cut(s) 441
BplI GAGNNNNNCTC 2 cut(s) 47, 79
Bpu14I TTCGAA 1 cut(s) 373
BpuEI CTTGAG 1 cut(s) 106
Bsa29I ATCGAT 1 cut(s) 732
BsaHI GRCGYC 1 cut(s) 196
BsaJI CCNNGG 3 cut(s) 98, 275, 491
BsaXI ACNNNNNCTCC 2 cut(s) 865, 895
Bse1I ACTGG 2 cut(s) 817, 1076
BseBI CCWGG 1 cut(s) 200
BseCI ATCGAT 1 cut(s) 732
BseDI CCNNGG 3 cut(s) 98, 275, 491
BseMII CTCAG 2 cut(s) 393, 1374
BseNI ACTGG 2 cut(s) 817, 1076
BseRI GAGGAG 1 cut(s) 1032
BseX3I CGGCCG 1 cut(s) 1122
BseXI GCAGC 3 cut(s) 48, 321, 1060
Bsh1236I CGCG 1 cut(s) 417
Bsh1285I CGRYCG 1 cut(s) 1125
BshFI GGCC 3 cut(s) 32, 789, 1124
BshNI GGYRCC 1 cut(s) 195
BshVI ATCGAT 1 cut(s) 732
BsiEI CGRYCG 1 cut(s) 1125
BslFI GGGAC 1 cut(s) 474
BsmFI GGGAC 1 cut(s) 474
BsnI GGCC 3 cut(s) 32, 789, 1124
Bsp119I TTCGAA 1 cut(s) 373
Bsp1286I GDGCHC 1 cut(s) 1372
Bsp143I GATC 5 cut(s) 560, 935, 964, 1155, 1351
Bsp19I CCATGG 1 cut(s) 98
Bsp68I TCGCGA 1 cut(s) 417
BspACI CCGC 3 cut(s) 622, 1125, 1286
BspANI GGCC 3 cut(s) 32, 789, 1124
BspCNI CTCAG 2 cut(s) 394, 1375
BspDI ATCGAT 1 cut(s) 732
BspFNI CGCG 1 cut(s) 417
BspHI TCATGA 1 cut(s) 123
BspLI GGNNCC 2 cut(s) 197, 620
BspOI GCTAGC 1 cut(s) 947
BspPI GGATC 1 cut(s) 568
BspQI GCTCTTC 2 cut(s) 8, 741
BspT104I TTCGAA 1 cut(s) 373
BspT107I GGYRCC 1 cut(s) 195
BsrI ACTGG 2 cut(s) 817, 1076
BssECI CCNNGG 3 cut(s) 98, 275, 491
BssMI GATC 5 cut(s) 560, 935, 964, 1155, 1351
BssNI GRCGYC 1 cut(s) 196
BssT1I CCWWGG 3 cut(s) 98, 275, 491
Bst2UI CCWGG 1 cut(s) 200
Bst4CI ACNGT 5 cut(s) 350, 502, 893, 1311, 1347
Bst6I CTCTTC 4 cut(s) 8, 21, 741, 1101
BstACI GRCGYC 1 cut(s) 196
BstAPI GCANNNNNTGC 1 cut(s) 876
BstBI TTCGAA 1 cut(s) 373
BstC8I GCNNGC 2 cut(s) 34, 945
BstDEI CTNAG 3 cut(s) 366, 402, 1383
BstDSI CCRYGG 1 cut(s) 98
BstEII GGTNACC 1 cut(s) 443
BstFNI CGCG 1 cut(s) 417
BstH2I RGCGCY 2 cut(s) 64, 199
BstHHI GCGC 4 cut(s) 20, 63, 198, 309
BstKTI GATC 5 cut(s) 563, 938, 967, 1158, 1354
BstMBI GATC 5 cut(s) 560, 935, 964, 1155, 1351
BstMCI CGRYCG 1 cut(s) 1125
BstMWI GCNNNNNNNGC 4 cut(s) 876, 885, 1038, 1054
BstNI CCWGG 1 cut(s) 200
BstNSI RCATGY 1 cut(s) 243
BstPAI GACNNNNGTC 1 cut(s) 441
BstPI GGTNACC 1 cut(s) 443
BstSCI CCNGG 1 cut(s) 198
BstSFI CTRYAG 1 cut(s) 564
BstUI CGCG 1 cut(s) 417
BstV1I GCAGC 3 cut(s) 48, 321, 1060
BstX2I RGATCY 1 cut(s) 560
BstYI RGATCY 1 cut(s) 560
BstZI CGGCCG 1 cut(s) 1122
Bsu15I ATCGAT 1 cut(s) 732
BsuRI GGCC 3 cut(s) 32, 789, 1124
BsuTUI ATCGAT 1 cut(s) 732
BtgI CCRYGG 1 cut(s) 98
BtgZI GCGATG 1 cut(s) 327
BtsIMutI CAGTG 1 cut(s) 540
BtuMI TCGCGA 1 cut(s) 417
Cac8I GCNNGC 2 cut(s) 34, 945
CciI TCATGA 1 cut(s) 123
CfoI GCGC 4 cut(s) 20, 63, 198, 309
ClaI ATCGAT 1 cut(s) 732
CseI GACGC 3 cut(s) 36, 563, 1038
Csp6I GTAC 2 cut(s) 537, 996
CspCI CAANNNNNGTGG 2 cut(s) 147, 182
CviAII CATG 8 cut(s) 51, 99, 124, 240, 449, 1052, 1094, 1255
CviJI RGCY 9 cut(s) 32, 356, 751, 789, 888, 943, 947, 1124, 1370
CviKI_1 RGCY 9 cut(s) 32, 356, 751, 789, 888, 943, 947, 1124, 1370
CviQI GTAC 2 cut(s) 537, 996
DdeI CTNAG 3 cut(s) 366, 402, 1383
DinI GGCGCC 1 cut(s) 197
DpnI GATC 5 cut(s) 562, 937, 966, 1157, 1353
DpnII GATC 5 cut(s) 560, 935, 964, 1155, 1351
DraI TTTAAA 1 cut(s) 190
EaeI YGGCCR 1 cut(s) 1122
EagI CGGCCG 1 cut(s) 1122
Eam1104I CTCTTC 4 cut(s) 8, 21, 741, 1101
EarI CTCTTC 4 cut(s) 8, 21, 741, 1101
EclXI CGGCCG 1 cut(s) 1122
Eco130I CCWWGG 3 cut(s) 98, 275, 491
Eco24I GRGCYC 1 cut(s) 1372
Eco47III AGCGCT 1 cut(s) 62
Eco52I CGGCCG 1 cut(s) 1122
Eco57I CTGAAG 3 cut(s) 737, 849, 972
Eco91I GGTNACC 1 cut(s) 443
EcoO65I GGTNACC 1 cut(s) 443
EcoRI GAATTC 1 cut(s) 1117
EcoRII CCWGG 1 cut(s) 198
EcoT14I CCWWGG 3 cut(s) 98, 275, 491
EcoT38I GRGCYC 1 cut(s) 1372
EgeI GGCGCC 1 cut(s) 197
EheI GGCGCC 1 cut(s) 197
ErhI CCWWGG 3 cut(s) 98, 275, 491
FaeI CATG 8 cut(s) 54, 102, 127, 243, 452, 1055, 1097, 1258
FalI AAGNNNNNCTT 2 cut(s) 735, 767
FaqI GGGAC 1 cut(s) 474
FatI CATG 8 cut(s) 50, 98, 123, 239, 448, 1051, 1093, 1254
FblI GTMKAC 1 cut(s) 843
Fnu4HI GCNGC 4 cut(s) 37, 310, 1049, 1125
FriOI GRGCYC 1 cut(s) 1372
Fsp4HI GCNGC 4 cut(s) 37, 310, 1049, 1125
FspBI CTAG 8 cut(s) 276, 324, 492, 837, 944, 987, 993, 1002
GlaI GCGC 4 cut(s) 19, 62, 197, 308
GluI GCNGC 4 cut(s) 37, 310, 1049, 1125
HaeII RGCGCY 2 cut(s) 64, 199
HaeIII GGCC 3 cut(s) 32, 789, 1124
HgaI GACGC 3 cut(s) 36, 563, 1038
HhaI GCGC 4 cut(s) 20, 63, 198, 309
Hin1I GRCGYC 1 cut(s) 196
Hin1II CATG 8 cut(s) 54, 102, 127, 243, 452, 1055, 1097, 1258
Hin6I GCGC 4 cut(s) 18, 61, 196, 307
HinP1I GCGC 4 cut(s) 18, 61, 196, 307
HincII GTYRAC 2 cut(s) 844, 982
HindII GTYRAC 2 cut(s) 844, 982
HinfI GANTC 8 cut(s) 80, 362, 370, 467, 569, 840, 845, 1168
HpaI GTTAAC 1 cut(s) 982
HphI GGTGA 5 cut(s) 437, 474, 656, 708, 805
Hpy166II GTNNAC 5 cut(s) 601, 813, 844, 982, 1025
Hpy188I TCNGA 7 cut(s) 117, 582, 756, 796, 952, 1173, 1351
Hpy188III TCNNGA 5 cut(s) 124, 416, 1014, 1187, 1382
Hpy8I GTNNAC 5 cut(s) 601, 813, 844, 982, 1025
Hpy99I CGWCG 2 cut(s) 1032, 1177
HpyAV CCTTC 4 cut(s) 402, 434, 760, 779
HpyCH4III ACNGT 5 cut(s) 350, 502, 893, 1311, 1347
HpyCH4V TGCA 5 cut(s) 699, 773, 870, 879, 1221
HpyF10VI GCNNNNNNNGC 4 cut(s) 876, 885, 1038, 1054
HpyF3I CTNAG 3 cut(s) 366, 402, 1383
Hsp92I GRCGYC 1 cut(s) 196
Hsp92II CATG 8 cut(s) 54, 102, 127, 243, 452, 1055, 1097, 1258
HspAI GCGC 4 cut(s) 18, 61, 196, 307
KasI GGCGCC 1 cut(s) 195
KspAI GTTAAC 1 cut(s) 982
Kzo9I GATC 5 cut(s) 560, 935, 964, 1155, 1351
LguI GCTCTTC 2 cut(s) 8, 741
LmnI GCTCC 2 cut(s) 68, 353
Lsp1109I GCAGC 3 cut(s) 48, 321, 1060
LweI GCATC 1 cut(s) 724
MaeI CTAG 8 cut(s) 276, 324, 492, 837, 944, 987, 993, 1002
MaeIII GTNAC 5 cut(s) 434, 443, 480, 644, 1250
MalI GATC 5 cut(s) 562, 937, 966, 1157, 1353
MboI GATC 5 cut(s) 560, 935, 964, 1155, 1351
MflI RGATCY 1 cut(s) 560
MhlI GDGCHC 1 cut(s) 1372
Mly113I GGCGCC 1 cut(s) 196
MlyI GAGTC 5 cut(s) 74, 356, 839, 849, 1177
MmeI TCCRAC 2 cut(s) 1083, 1196
MroXI GAANNNNTTC 1 cut(s) 750
MseI TTAA 6 cut(s) 189, 800, 824, 959, 981, 1304
MslI CAYNNNNRTG 1 cut(s) 1205
MspR9I CCNGG 1 cut(s) 200
MvaI CCWGG 1 cut(s) 200
MvnI CGCG 1 cut(s) 417
MwoI GCNNNNNNNGC 4 cut(s) 876, 885, 1038, 1054
NarI GGCGCC 1 cut(s) 196
NcoI CCATGG 1 cut(s) 98
NdeII GATC 5 cut(s) 560, 935, 964, 1155, 1351
NheI GCTAGC 1 cut(s) 943
NlaIII CATG 8 cut(s) 54, 102, 127, 243, 452, 1055, 1097, 1258
NlaIV GGNNCC 2 cut(s) 197, 620
NmuCI GTSAC 5 cut(s) 434, 443, 480, 644, 1250
NruI TCGCGA 1 cut(s) 417
NspI RCATGY 1 cut(s) 243
NspV TTCGAA 1 cut(s) 373
PagI TCATGA 1 cut(s) 123
PciI ACATGT 1 cut(s) 239
PciSI GCTCTTC 2 cut(s) 8, 741
PdmI GAANNNNTTC 1 cut(s) 750
PfeI GAWTC 3 cut(s) 370, 467, 569
PkrI GCNGC 4 cut(s) 38, 311, 1050, 1126
PleI GAGTC 5 cut(s) 74, 356, 839, 848, 1176
PluTI GGCGCC 1 cut(s) 199
PpsI GAGTC 5 cut(s) 74, 356, 839, 848, 1176
PscI ACATGT 1 cut(s) 239
PshAI GACNNNNGTC 1 cut(s) 441
Psp6I CCWGG 1 cut(s) 198
PspEI GGTNACC 1 cut(s) 443
PspGI CCWGG 1 cut(s) 198
PspN4I GGNNCC 2 cut(s) 197, 620
PsrI GAACNNNNNNTAC 2 cut(s) 988, 1020
PsuI RGATCY 1 cut(s) 560
RruI TCGCGA 1 cut(s) 417
RsaI GTAC 2 cut(s) 538, 997
RsaNI GTAC 2 cut(s) 537, 996
RseI CAYNNNNRTG 1 cut(s) 1205
SalI GTCGAC 1 cut(s) 842
SapI GCTCTTC 2 cut(s) 8, 741
SaqAI TTAA 6 cut(s) 189, 800, 824, 959, 981, 1304
SatI GCNGC 4 cut(s) 37, 310, 1049, 1125
Sau3AI GATC 5 cut(s) 560, 935, 964, 1155, 1351
ScaI AGTACT 1 cut(s) 997
SchI GAGTC 5 cut(s) 74, 356, 839, 849, 1177
ScrFI CCNGG 1 cut(s) 200
SduI GDGCHC 1 cut(s) 1372
SfaNI GCATC 1 cut(s) 724
SfcI CTRYAG 1 cut(s) 564
SfoI GGCGCC 1 cut(s) 197
SfuI TTCGAA 1 cut(s) 373
SmiMI CAYNNNNRTG 1 cut(s) 1205
SmlI CTYRAG 1 cut(s) 85
SmoI CTYRAG 1 cut(s) 85
SpeI ACTAGT 2 cut(s) 986, 1001
SsiI CCGC 3 cut(s) 622, 1125, 1286
SspDI GGCGCC 1 cut(s) 195
SspI AATATT 1 cut(s) 1279
SspMI CTAG 8 cut(s) 276, 324, 492, 837, 944, 987, 993, 1002
StyD4I CCNGG 1 cut(s) 198
StyI CCWWGG 3 cut(s) 98, 275, 491
TaaI ACNGT 5 cut(s) 350, 502, 893, 1311, 1347
TaqI TCGA 7 cut(s) 69, 150, 373, 609, 732, 843, 938
TatI WGTACW 1 cut(s) 995
TauI GCSGC 1 cut(s) 1127
TfiI GAWTC 3 cut(s) 370, 467, 569
Tru1I TTAA 6 cut(s) 189, 800, 824, 959, 981, 1304
Tru9I TTAA 6 cut(s) 189, 800, 824, 959, 981, 1304
TscAI CASTG 1 cut(s) 547
TseFI GTSAC 5 cut(s) 434, 443, 480, 644, 1250
TseI GCWGC 3 cut(s) 36, 309, 1048
Tsp45I GTSAC 5 cut(s) 434, 443, 480, 644, 1250
TspDTI ATGAA 5 cut(s) 20, 140, 756, 1104, 1223
TspGWI ACGGA 3 cut(s) 851, 1190, 1217
TspRI CASTG 1 cut(s) 547
XapI RAATTY 5 cut(s) 71, 224, 907, 1117, 1210
XceI RCATGY 1 cut(s) 243
XmaJI CCTAGG 2 cut(s) 275, 491
XmiI GTMKAC 1 cut(s) 843
XmnI GAANNNNTTC 1 cut(s) 750
XspI CTAG 8 cut(s) 276, 324, 492, 837, 944, 987, 993, 1002
ZrmI AGTACT 1 cut(s) 997
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.