Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001478

Physical Location & Seq

Genomic Coordinates Reverse (-)

8584039 .. 8585135

Gene Structure 1097 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G24230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGTTGGAGGAAGCTTATCACCGGCGTTTACTATTGATGAAGCGACGTCATACATCAATGCTGTGAAGGAAGCATTTGGGGCTGATCAACCTGCAAAATATCGAGAGTTTCTCGACATCATGCTGGATTTAAGAGCTAATAGAGTCGATTTAGCTACCGTCGTTCCAAGGATGCGGGAACTCTTGAAAGATCACGTGAATCTGCTACTTCGTTTCAATGCCTTCCTTCCAGCTGAGGCTAAGGAAACATTTCATGATGTACGTTCATACATCTATTCTTTGAAGGAATCATTTCGTGATGAACCTGCAAAATATGCTCAGTTTCTCGAGATCTTGAATGATTATAGCGCCCGTAGAGTCGATGCTCCTAGTGCCGTTGCAAGGATGACGGAACTCATGAAAGACCACCGGAATCTGGTTCTTGGTTTCAGTGTCTTGCTCTCAACTGGAGATACAAAAACCACCCCTCTCGAAGCTGAGCCTGATAATAACAAAAGAATACGTGTAGCAAATTTTATCAGCAAGCTTAAGGCAAGGTTCCAGGGGAATGATGGCCATGTATATGAGTCATTTCTCGAGATATTGACAATGTACCAACAAGGAAACAAATCCGTAAATGACTTGTACCAGGAGGTTGTTGCACTTCTTCAGGGTCATGAAGATTTAGTCATGGAGTTTTCAAACGTTTTCAAGAGAACCACTGGTCCATCAGGGTCAAAATCTGCTAGAGATAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

245

Amino Acids

27.79

Weight (kDa)

6.24

Isoelectric Point (pI)

34.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAH	PF02671	32 - 76	4.9e-13	Paired amphipathic helix repeat
PAH	PF02671	103 - 147	6.2e-13	Paired amphipathic helix repeat
PAH	PF02671	186 - 228	3.7e-15	Paired amphipathic helix repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23810 AT1G24210 AT1G24220 AT1G24220 AT1G24230 AT1G24250 AT1G27240 AT1G27260 AT1G27270 AT1G27280
fragaria_vesca	FvH4_3g01921 FvH4_3g01930 FvH4_5g11770 FvH4_5g22630
malus_domestica	MD08G1247800.v1.1
pyrus_communis	pycom08g21470 pycom15g39040
rosa_chinensis	RchiOBHm_Chr5g0002831 RchiOBHm_Chr5g0002841
rosa_laevigata	RLG00000003026 RLG00000003029 RLG00000031063 RLG00000031064
rosa_multiflora	Rmu_co8115592.1_g000001 Rmu_co8158784.1_g000001 Rmu_sc0012670.1_g000008 Rmu_sc0012670.1_g000009 Rmu_sc0013603.1_g000011 Rmu_sc0013603.1_g000012
rosa_roxburghii	Rroxscaffold_1G00073010 Rroxscaffold_1G00073020 Rroxscaffold_3G00248150
rosa_rugosa	Rorug04G0400000 Rorug04G0400100
rosa_samantha	Rh5AG022900 Rh5BG025500 Rh5BG025600 Rh5CG025400 Rh5CG025500 Rh5DG024000 Rh5DG024100 Rh7AG255700 Rh7AG256500 Rh7BG250100 Rh7CG272100 Rh7CG272900 Rh7CG273000 Rh7DG262900
rosa_wichuraiana	Rw5G002120 Rw5G002140 Rw7G021870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	50
Acc36I	ACCTGC	2 cut(s)	100, 313
AciI	CCGC	1 cut(s)	175
AclI	AACGTT	1 cut(s)	684
AcoI	YGGCCR	1 cut(s)	553
AcsI	RAATTY	1 cut(s)	511
AcuI	CTGAAG	1 cut(s)	632
AcvI	CACGTG	1 cut(s)	196
AcyI	GRCGYC	1 cut(s)	47
AfaI	GTAC	3 cut(s)	261, 593, 626
AfiI	CCNNNNNNNGG	2 cut(s)	381, 415
AflII	CTTAAG	1 cut(s)	527
AflIII	ACRYGT	1 cut(s)	502
AgsI	TTSAA	6 cut(s)	187, 217, 283, 337, 681, 691
AjnI	CCWGG	2 cut(s)	540, 627
AloI	GAACNNNNNNTCC	2 cut(s)	688, 720
AluBI	AGCT	6 cut(s)	15, 137, 155, 233, 476, 526
AluI	AGCT	6 cut(s)	15, 137, 155, 233, 476, 526
Ama87I	CYCGRG	2 cut(s)	326, 575
AoxI	GGCC	1 cut(s)	553
ApoI	RAATTY	1 cut(s)	511
Asp700I	GAANNNNTTC	2 cut(s)	249, 291
AspLEI	GCGC	1 cut(s)	350
AspS9I	GGNCC	1 cut(s)	704
AsuHPI	GGTGA	1 cut(s)	12
AvaI	CYCGRG	2 cut(s)	326, 575
AvaII	GGWCC	1 cut(s)	704
BalI	TGGCCA	1 cut(s)	555
BbrPI	CACGTG	1 cut(s)	196
BbvCI	CCTCAGC	1 cut(s)	234
BccI	CCATC	2 cut(s)	545, 715
BceAI	ACGGC	1 cut(s)	359
BciT130I	CCWGG	2 cut(s)	542, 629
BclI	TGATCA	1 cut(s)	85
BfaI	CTAG	2 cut(s)	369, 726
BfoI	RGCGCY	1 cut(s)	351
BfrI	CTTAAG	1 cut(s)	527
BfuAI	ACCTGC	2 cut(s)	100, 313
BglII	AGATCT	1 cut(s)	330
BlpI	GCTNAGC	1 cut(s)	477
Bme1390I	CCNGG	2 cut(s)	542, 629
Bme18I	GGWCC	1 cut(s)	704
BmeT110I	CYCGRG	2 cut(s)	326, 575
BmgT120I	GGNCC	1 cut(s)	704
BmiI	GGNNCC	1 cut(s)	539
BmrFI	CCNGG	2 cut(s)	542, 629
BmsI	GCATC	2 cut(s)	162, 352
BplI	GAGNNNNNCTC	2 cut(s)	96, 128
BpmI	CTGGAG	1 cut(s)	468
Bpu10I	CCTNAGC	2 cut(s)	234, 240
Bpu1102I	GCTNAGC	1 cut(s)	477
BsaAI	YACGTR	2 cut(s)	196, 503
BsaHI	GRCGYC	1 cut(s)	47
BsaJI	CCNNGG	2 cut(s)	167, 541
BsaWI	WCCGGW	1 cut(s)	408
Bsc4I	CCNNNNNNNGG	2 cut(s)	381, 415
Bse118I	RCCGGY	1 cut(s)	22
Bse1I	ACTGG	2 cut(s)	451, 706
BseBI	CCWGG	2 cut(s)	542, 629
BseDI	CCNNGG	2 cut(s)	167, 541
BseGI	GGATG	2 cut(s)	177, 390
BseLI	CCNNNNNNNGG	2 cut(s)	381, 415
BseMII	CTCAG	3 cut(s)	225, 332, 468
BseNI	ACTGG	2 cut(s)	451, 706
BshFI	GGCC	1 cut(s)	555
BsiHKCI	CYCGRG	2 cut(s)	326, 575
BsiSI	CCGG	2 cut(s)	23, 409
BslI	CCNNNNNNNGG	2 cut(s)	381, 415
BsnI	GGCC	1 cut(s)	555
BsoBI	CYCGRG	2 cut(s)	326, 575
Bsp143I	GATC	3 cut(s)	85, 190, 330
Bsp1720I	GCTNAGC	1 cut(s)	477
BspACI	CCGC	1 cut(s)	175
BspANI	GGCC	1 cut(s)	555
BspCNI	CTCAG	3 cut(s)	226, 331, 469
BspHI	TCATGA	3 cut(s)	253, 396, 655
BspLI	GGNNCC	1 cut(s)	539
BspMI	ACCTGC	2 cut(s)	100, 313
BspTI	CTTAAG	1 cut(s)	527
BsrFI	RCCGGY	1 cut(s)	22
BsrI	ACTGG	2 cut(s)	451, 706
BssAI	RCCGGY	1 cut(s)	22
BssECI	CCNNGG	2 cut(s)	167, 541
BssMI	GATC	3 cut(s)	85, 190, 330
BssNI	GRCGYC	1 cut(s)	47
BssT1I	CCWWGG	1 cut(s)	167
Bst2UI	CCWGG	2 cut(s)	542, 629
Bst4CI	ACNGT	1 cut(s)	160
BstACI	GRCGYC	1 cut(s)	47
BstAFI	CTTAAG	1 cut(s)	527
BstAPI	GCANNNNNTGC	1 cut(s)	314
BstBAI	YACGTR	2 cut(s)	196, 503
BstC8I	GCNNGC	1 cut(s)	524
BstDEI	CTNAG	4 cut(s)	234, 240, 318, 477
BstF5I	GGATG	2 cut(s)	177, 390
BstH2I	RGCGCY	1 cut(s)	351
BstHHI	GCGC	1 cut(s)	350
BstKTI	GATC	3 cut(s)	88, 193, 333
BstMBI	GATC	3 cut(s)	85, 190, 330
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 314, 371
BstNI	CCWGG	2 cut(s)	542, 629
BstSCI	CCNGG	2 cut(s)	540, 627
BstX2I	RGATCY	1 cut(s)	330
BstYI	RGATCY	1 cut(s)	330
BsuRI	GGCC	1 cut(s)	555
BtsCI	GGATG	2 cut(s)	177, 390
BtsIMutI	CAGTG	2 cut(s)	436, 699
BveI	ACCTGC	2 cut(s)	100, 313
Cac8I	GCNNGC	1 cut(s)	524
CciI	TCATGA	3 cut(s)	253, 396, 655
CfoI	GCGC	1 cut(s)	350
Cfr10I	RCCGGY	1 cut(s)	22
Cfr13I	GGNCC	1 cut(s)	704
Csp6I	GTAC	3 cut(s)	260, 592, 625
CviAII	CATG	6 cut(s)	121, 254, 397, 557, 656, 670
CviQI	GTAC	3 cut(s)	260, 592, 625
DdeI	CTNAG	4 cut(s)	234, 240, 318, 477
DpnI	GATC	3 cut(s)	87, 192, 332
DpnII	GATC	3 cut(s)	85, 190, 330
EaeI	YGGCCR	1 cut(s)	553
Eco130I	CCWWGG	1 cut(s)	167
Eco47I	GGWCC	1 cut(s)	704
Eco57I	CTGAAG	1 cut(s)	632
Eco72I	CACGTG	1 cut(s)	196
Eco88I	CYCGRG	2 cut(s)	326, 575
EcoRII	CCWGG	2 cut(s)	540, 627
EcoT14I	CCWWGG	1 cut(s)	167
ErhI	CCWWGG	1 cut(s)	167
FaeI	CATG	6 cut(s)	124, 257, 400, 560, 659, 673
FatI	CATG	6 cut(s)	120, 253, 396, 556, 655, 669
FauI	CCCGC	1 cut(s)	168
FbaI	TGATCA	1 cut(s)	85
FokI	GGATG	2 cut(s)	184, 397
FspBI	CTAG	2 cut(s)	369, 726
GlaI	GCGC	1 cut(s)	349
GsuI	CTGGAG	1 cut(s)	468
HaeII	RGCGCY	1 cut(s)	351
HaeIII	GGCC	1 cut(s)	555
HapII	CCGG	2 cut(s)	23, 409
HhaI	GCGC	1 cut(s)	350
Hin1I	GRCGYC	1 cut(s)	47
Hin1II	CATG	6 cut(s)	124, 257, 400, 560, 659, 673
Hin6I	GCGC	1 cut(s)	348
HinP1I	GCGC	1 cut(s)	348
HindIII	AAGCTT	2 cut(s)	13, 524
HinfI	GANTC	6 cut(s)	144, 199, 287, 357, 412, 566
HpaII	CCGG	2 cut(s)	23, 409
HphI	GGTGA	1 cut(s)	12
Hpy166II	GTNNAC	1 cut(s)	30
Hpy8I	GTNNAC	1 cut(s)	30
Hpy99I	CGWCG	2 cut(s)	49, 164
HpyAV	CCTTC	4 cut(s)	61, 232, 236, 277
HpyCH4III	ACNGT	1 cut(s)	160
HpyCH4IV	ACGT	5 cut(s)	47, 195, 262, 502, 684
HpyCH4V	TGCA	4 cut(s)	95, 308, 380, 641
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 314, 371
HpyF3I	CTNAG	4 cut(s)	234, 240, 318, 477
HpySE526I	ACGT	5 cut(s)	47, 195, 262, 502, 684
Hsp92I	GRCGYC	1 cut(s)	47
Hsp92II	CATG	6 cut(s)	124, 257, 400, 560, 659, 673
HspAI	GCGC	1 cut(s)	348
Ksp22I	TGATCA	1 cut(s)	85
Kzo9I	GATC	3 cut(s)	85, 190, 330
LmnI	GCTCC	1 cut(s)	370
LweI	GCATC	2 cut(s)	162, 352
MaeI	CTAG	2 cut(s)	369, 726
MaeII	ACGT	5 cut(s)	47, 195, 262, 502, 684
MalI	GATC	3 cut(s)	87, 192, 332
MboI	GATC	3 cut(s)	85, 190, 330
MboII	GAAGA	2 cut(s)	638, 671
MflI	RGATCY	1 cut(s)	330
MlsI	TGGCCA	1 cut(s)	555
MluCI	AATT	1 cut(s)	511
MluNI	TGGCCA	1 cut(s)	555
MlyI	GAGTC	3 cut(s)	153, 366, 575
MnlI	CCTC	3 cut(s)	229, 477, 625
Mox20I	TGGCCA	1 cut(s)	555
MroXI	GAANNNNTTC	2 cut(s)	249, 291
MscI	TGGCCA	1 cut(s)	555
MseI	TTAA	2 cut(s)	131, 528
MslI	CAYNNNNRTG	1 cut(s)	561
Msp20I	TGGCCA	1 cut(s)	555
MspA1I	CMGCKG	1 cut(s)	233
MspCI	CTTAAG	1 cut(s)	527
MspI	CCGG	2 cut(s)	23, 409
MspR9I	CCNGG	2 cut(s)	542, 629
MvaI	CCWGG	2 cut(s)	542, 629
MwoI	GCNNNNNNNGC	3 cut(s)	80, 314, 371
NdeII	GATC	3 cut(s)	85, 190, 330
NlaIII	CATG	6 cut(s)	124, 257, 400, 560, 659, 673
NlaIV	GGNNCC	1 cut(s)	539
PaeR7I	CTCGAG	2 cut(s)	326, 575
PagI	TCATGA	3 cut(s)	253, 396, 655
PdmI	GAANNNNTTC	2 cut(s)	249, 291
PfeI	GAWTC	3 cut(s)	199, 287, 412
PleI	GAGTC	3 cut(s)	152, 365, 574
PmaCI	CACGTG	1 cut(s)	196
PmlI	CACGTG	1 cut(s)	196
PpsI	GAGTC	3 cut(s)	152, 365, 574
Ppu21I	YACGTR	2 cut(s)	196, 503
Psp1406I	AACGTT	1 cut(s)	684
Psp6I	CCWGG	2 cut(s)	540, 627
PspCI	CACGTG	1 cut(s)	196
PspGI	CCWGG	2 cut(s)	540, 627
PspN4I	GGNNCC	1 cut(s)	539
PspPI	GGNCC	1 cut(s)	704
PsuI	RGATCY	1 cut(s)	330
PvuII	CAGCTG	1 cut(s)	233
RsaI	GTAC	3 cut(s)	261, 593, 626
RsaNI	GTAC	3 cut(s)	260, 592, 625
RseI	CAYNNNNRTG	1 cut(s)	561
SaqAI	TTAA	2 cut(s)	131, 528
Sau3AI	GATC	3 cut(s)	85, 190, 330
Sau96I	GGNCC	1 cut(s)	704
SchI	GAGTC	3 cut(s)	153, 366, 575
ScrFI	CCNGG	2 cut(s)	542, 629
SfaNI	GCATC	2 cut(s)	162, 352
Sfr274I	CTCGAG	2 cut(s)	326, 575
SgrAI	CRCCGGYG	1 cut(s)	22
SinI	GGWCC	1 cut(s)	704
SlaI	CTCGAG	2 cut(s)	326, 575
SmiMI	CAYNNNNRTG	1 cut(s)	561
SmlI	CTYRAG	3 cut(s)	326, 527, 575
SmoI	CTYRAG	3 cut(s)	326, 527, 575
Sse9I	AATT	1 cut(s)	511
SsiI	CCGC	1 cut(s)	175
SspMI	CTAG	2 cut(s)	369, 726
StyD4I	CCNGG	2 cut(s)	540, 627
StyI	CCWWGG	1 cut(s)	167
TaaI	ACNGT	1 cut(s)	160
TaiI	ACGT	5 cut(s)	50, 198, 265, 505, 687
TaqI	TCGA	7 cut(s)	103, 114, 147, 327, 360, 471, 576
TasI	AATT	1 cut(s)	511
TfiI	GAWTC	3 cut(s)	199, 287, 412
Tru1I	TTAA	2 cut(s)	131, 528
Tru9I	TTAA	2 cut(s)	131, 528
TscAI	CASTG	2 cut(s)	436, 706
TspDTI	ATGAA	6 cut(s)	54, 242, 255, 315, 413, 672
TspGWI	ACGGA	2 cut(s)	404, 601
TspRI	CASTG	2 cut(s)	436, 706
Vha464I	CTTAAG	1 cut(s)	527
VpaK11BI	GGWCC	1 cut(s)	704
XapI	RAATTY	1 cut(s)	511
XcmI	CCANNNNNNNNNTGG	1 cut(s)	548
XhoI	CTCGAG	2 cut(s)	326, 575
XmnI	GAANNNNTTC	2 cut(s)	249, 291
XspI	CTAG	2 cut(s)	369, 726
ZraI	GACGTC	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.