Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001478

Physical Location & Seq

Genomic Coordinates Forward (+)

6664602 .. 6666279

Gene Structure 1678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g11770.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGCTTCGATCAGAAATGGTTCTGTCTCGACAAAAAGAAGAGCTCTCCGGTGAACCCCAGATGGTAAATGACGAGAAGTTGAGGTCAGAAATATCAAGGAAGGACTGCATCGAATTTGTAAAGACCTTGCAGAACTTCAACTCCTATGTCTACCAAGAGTTCGTCCATCTCATGAAAGACTTCAAGATAGAAGGTGATGACTGTATTAAGGCTTTGAAACAGAAGGTAAAGGAATTGTTTGAAGGGCATCCGGATTTGATATTAGGGTTCAATGCCTTCTTGCCTAAGAGACATAGAATTAACGTCCCAATCCAAGTAAAAGTCCAGACCAGCAGGAAACTCCCAATAGTACTTTCTCGAAAGAGAAAGCGCTGCGATGATGCTAGTGATGTTTATGGTGCTGGATCTAATGACTCTAAGCTTCAAAAAGTGATCGATTTTGTGAACAAGGTTAAGGATAGATTTCATCATCACGATAATGAGGAAGGTGAAGATGTGTTTCAGTCCTTTTTAGATATTTTCTTGACTAATCACCGCAAAAGAAACAAGTTGTCACCCAATAGAAACAAGTTGTCACCCAGTAAGTCCATCACTGCTGTTGAAGAAGATGAGCTTCATATTTACAAGAAGGTAGAAGAACTTTTCGAAGGCCATCCGGACTTGATTGATGAGTTCACCAACTTTTTACCAACAATCCCTTTCCCTTCACTTTCCTCAGTCATTGATTTCGATAACTGCGAGACTTGCACCCCAAGCTACCGTCTTCTACCAGAGAATTTCCCCATTCCTGCTGCCACCAAAAGATCAAAGCTTGCTTCTCAAGTATTGAATGATCGTTGGGTATGCGTTCCTAGTACTACTTCAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAACACACAACAATACAAGTCCGGGGGGGAAGATAAAAGGTTCGAAGTTGATAGGAAGGTGAACGCCGTGAAGTCAACCTTAAAGAGCATCAGCTCGCTGATGGAAAAGATTGAAAAGGATAGTCCATCAAAGATCTATGTTGAAGATCATCTCACTGAGCTGGATTTGAAATGCATTCAGAGATGTTATAAGAAACAAGGGCTGAAGGCCATGGATGAACTGAGGAAAGATATTCGAGTGGCTTTGCCCTTGTTGGTGAAAGGGTTGAAGCTACAGGAAGAAAAGCTGAAACAACGCCGATCACTTCTAAACCAAAAGTGGGTTTGTCATACGAAAGTTCTTAGTTGCAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

424

Amino Acids

48.17

Weight (kDa)

9.06

Isoelectric Point (pI)

54.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAH	PF02671	50 - 94	6.9e-13	Paired amphipathic helix repeat
PAH	PF02671	201 - 229	1.4e-06	Paired amphipathic helix repeat
Sin3_corepress	PF08295	248 - 289	6.8e-11	Sin3 family co-repressor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23810 AT1G24210 AT1G24220 AT1G24220 AT1G24230 AT1G24250 AT1G27240 AT1G27260 AT1G27270 AT1G27280
fragaria_vesca	FvH4_3g01921 FvH4_3g01930 FvH4_5g11770 FvH4_5g22630
malus_domestica	MD08G1247800.v1.1
pyrus_communis	pycom08g21470 pycom15g39040
rosa_chinensis	RchiOBHm_Chr5g0002831 RchiOBHm_Chr5g0002841
rosa_laevigata	RLG00000003026 RLG00000003029 RLG00000031063 RLG00000031064
rosa_multiflora	Rmu_co8115592.1_g000001 Rmu_co8158784.1_g000001 Rmu_sc0012670.1_g000008 Rmu_sc0012670.1_g000009 Rmu_sc0013603.1_g000011 Rmu_sc0013603.1_g000012
rosa_roxburghii	Rroxscaffold_1G00073010 Rroxscaffold_1G00073020 Rroxscaffold_3G00248150
rosa_rugosa	Rorug04G0400000 Rorug04G0400100
rosa_samantha	Rh5AG022900 Rh5BG025500 Rh5BG025600 Rh5CG025400 Rh5CG025500 Rh5DG024000 Rh5DG024100 Rh7AG255700 Rh7AG256500 Rh7BG250100 Rh7CG272100 Rh7CG272900 Rh7CG273000 Rh7DG262900
rosa_wichuraiana	Rw5G002120 Rw5G002140 Rw7G021870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1107
Acc36I	ACCTGC	1 cut(s)	1257
AccI	GTMKAC	1 cut(s)	150
AccIII	TCCGGA	2 cut(s)	250, 655
AciI	CCGC	1 cut(s)	535
AclWI	GGATC	1 cut(s)	412
AcsI	RAATTY	2 cut(s)	113, 775
AcuI	CTGAAG	1 cut(s)	1142
AfaI	GTAC	2 cut(s)	351, 856
AfeI	AGCGCT	1 cut(s)	371
AfiI	CCNNNNNNNGG	1 cut(s)	1237
AjuI	GAANNNNNNNTTGG	2 cut(s)	337, 369
AloI	GAACNNNNNNTCC	2 cut(s)	125, 157
AluBI	AGCT	9 cut(s)	43, 421, 613, 756, 811, 1011, 1078, 1189, 1204
AluI	AGCT	9 cut(s)	43, 421, 613, 756, 811, 1011, 1078, 1189, 1204
Alw21I	GWGCWC	1 cut(s)	45
Alw26I	GTCTC	3 cut(s)	30, 283, 734
AlwI	GGATC	1 cut(s)	412
Aor13HI	TCCGGA	2 cut(s)	250, 655
Aor51HI	AGCGCT	1 cut(s)	371
AoxI	GGCC	2 cut(s)	649, 1125
ApeKI	GCWGC	2 cut(s)	372, 791
ApoI	RAATTY	2 cut(s)	113, 775
Asp700I	GAANNNNTTC	2 cut(s)	18, 179
AspLEI	GCGC	1 cut(s)	372
AsuC2I	CCSGG	1 cut(s)	940
AsuHPI	GGTGA	9 cut(s)	62, 206, 500, 524, 546, 567, 667, 988, 1186
AsuII	TTCGAA	2 cut(s)	645, 960
BanII	GRGCYC	1 cut(s)	45
BbsI	GAAGAC	1 cut(s)	755
Bbv12I	GWGCWC	1 cut(s)	45
BbvI	GCAGC	2 cut(s)	359, 778
BccI	CCATC	6 cut(s)	55, 174, 596, 660, 1012, 1051
BceAI	ACGGC	1 cut(s)	968
BcnI	CCSGG	1 cut(s)	940
BcoDI	GTCTC	3 cut(s)	30, 283, 734
BfaI	CTAG	2 cut(s)	384, 852
BfmI	CTRYAG	1 cut(s)	1190
BfoI	RGCGCY	1 cut(s)	373
BfuAI	ACCTGC	1 cut(s)	1257
BglII	AGATCT	1 cut(s)	1050
BisI	GCNGC	2 cut(s)	373, 792
BlsI	GCNGC	2 cut(s)	374, 793
BmcAI	AGTACT	2 cut(s)	351, 856
Bme1390I	CCNGG	1 cut(s)	940
BmrFI	CCNGG	1 cut(s)	940
BmrI	ACTGGG	1 cut(s)	573
BmsI	GCATC	4 cut(s)	117, 256, 370, 1014
BmuI	ACTGGG	1 cut(s)	573
BpiI	GAAGAC	1 cut(s)	755
Bpu14I	TTCGAA	2 cut(s)	645, 960
BpuEI	CTTGAG	1 cut(s)	804
BpuMI	CCSGG	1 cut(s)	940
Bsa29I	ATCGAT	1 cut(s)	435
BsaJI	CCNNGG	2 cut(s)	939, 1128
BsaWI	WCCGGW	3 cut(s)	47, 250, 655
BsaXI	ACNNNNNCTCC	2 cut(s)	125, 155
Bsc4I	CCNNNNNNNGG	1 cut(s)	1237
Bse1I	ACTGG	1 cut(s)	579
BseAI	TCCGGA	2 cut(s)	250, 655
BseCI	ATCGAT	1 cut(s)	435
BseDI	CCNNGG	2 cut(s)	939, 1128
BseGI	GGATG	3 cut(s)	247, 652, 1138
BseLI	CCNNNNNNNGG	1 cut(s)	1237
BseMII	CTCAG	3 cut(s)	729, 1065, 1130
BseNI	ACTGG	1 cut(s)	579
BseXI	GCAGC	2 cut(s)	359, 778
BshFI	GGCC	2 cut(s)	651, 1127
BshVI	ATCGAT	1 cut(s)	435
BsiHKAI	GWGCWC	1 cut(s)	45
BsiSI	CCGG	4 cut(s)	48, 251, 656, 939
BslFI	GGGAC	1 cut(s)	290
BslI	CCNNNNNNNGG	1 cut(s)	1237
BsmAI	GTCTC	3 cut(s)	30, 283, 734
BsmFI	GGGAC	1 cut(s)	290
BsmI	GAATGC	1 cut(s)	1092
BsnI	GGCC	2 cut(s)	651, 1127
Bsp119I	TTCGAA	2 cut(s)	645, 960
Bsp1286I	GDGCHC	1 cut(s)	45
Bsp13I	TCCGGA	2 cut(s)	250, 655
Bsp143I	GATC	8 cut(s)	8, 404, 432, 803, 832, 1050, 1063, 1217
Bsp19I	CCATGG	1 cut(s)	1128
BspACI	CCGC	1 cut(s)	535
BspANI	GGCC	2 cut(s)	651, 1127
BspCNI	CTCAG	3 cut(s)	728, 1066, 1131
BspDI	ATCGAT	1 cut(s)	435
BspEI	TCCGGA	2 cut(s)	250, 655
BspHI	TCATGA	1 cut(s)	171
BspMI	ACCTGC	1 cut(s)	1257
BspPI	GGATC	1 cut(s)	412
BspQI	GCTCTTC	1 cut(s)	33
BspT104I	TTCGAA	2 cut(s)	645, 960
BsrI	ACTGG	1 cut(s)	579
BssECI	CCNNGG	2 cut(s)	939, 1128
BssMI	GATC	8 cut(s)	8, 404, 432, 803, 832, 1050, 1063, 1217
BssT1I	CCWWGG	1 cut(s)	1128
Bst4CI	ACNGT	2 cut(s)	203, 761
Bst6I	CTCTTC	1 cut(s)	33
BstBI	TTCGAA	2 cut(s)	645, 960
BstC8I	GCNNGC	2 cut(s)	813, 1013
BstDEI	CTNAG	6 cut(s)	285, 417, 715, 1074, 1139, 1259
BstDSI	CCRYGG	1 cut(s)	1128
BstF5I	GGATG	3 cut(s)	247, 652, 1138
BstH2I	RGCGCY	1 cut(s)	373
BstHHI	GCGC	1 cut(s)	372
BstKTI	GATC	8 cut(s)	11, 407, 435, 806, 835, 1053, 1066, 1220
BstMAI	GTCTC	3 cut(s)	30, 283, 734
BstMBI	GATC	8 cut(s)	8, 404, 432, 803, 832, 1050, 1063, 1217
BstMWI	GCNNNNNNNGC	2 cut(s)	744, 753
BstSCI	CCNGG	1 cut(s)	938
BstSFI	CTRYAG	1 cut(s)	1190
BstV1I	GCAGC	2 cut(s)	359, 778
BstV2I	GAAGAC	1 cut(s)	755
BstX2I	RGATCY	2 cut(s)	404, 1050
BstYI	RGATCY	2 cut(s)	404, 1050
Bsu15I	ATCGAT	1 cut(s)	435
BsuRI	GGCC	2 cut(s)	651, 1127
BsuTUI	ATCGAT	1 cut(s)	435
BtgI	CCRYGG	1 cut(s)	1128
BtgZI	GCGATG	1 cut(s)	390
BtsCI	GGATG	3 cut(s)	247, 652, 1138
BtsI	GCAGTG	1 cut(s)	591
BtsIMutI	CAGTG	2 cut(s)	591, 1071
BveI	ACCTGC	1 cut(s)	1257
Cac8I	GCNNGC	2 cut(s)	813, 1013
CciI	TCATGA	1 cut(s)	171
CfoI	GCGC	1 cut(s)	372
ClaI	ATCGAT	1 cut(s)	435
Csp6I	GTAC	2 cut(s)	350, 855
CviAII	CATG	2 cut(s)	172, 1129
CviQI	GTAC	2 cut(s)	350, 855
DdeI	CTNAG	6 cut(s)	285, 417, 715, 1074, 1139, 1259
DpnI	GATC	8 cut(s)	10, 406, 434, 805, 834, 1052, 1065, 1219
DpnII	GATC	8 cut(s)	8, 404, 432, 803, 832, 1050, 1063, 1217
Eam1104I	CTCTTC	1 cut(s)	33
EarI	CTCTTC	1 cut(s)	33
Ecl136II	GAGCTC	1 cut(s)	43
Eco130I	CCWWGG	1 cut(s)	1128
Eco24I	GRGCYC	1 cut(s)	45
Eco47III	AGCGCT	1 cut(s)	371
Eco53kI	GAGCTC	1 cut(s)	43
Eco57I	CTGAAG	1 cut(s)	1142
EcoICRI	GAGCTC	1 cut(s)	43
EcoT14I	CCWWGG	1 cut(s)	1128
EcoT22I	ATGCAT	1 cut(s)	1094
EcoT38I	GRGCYC	1 cut(s)	45
ErhI	CCWWGG	1 cut(s)	1128
FaeI	CATG	2 cut(s)	175, 1132
FalI	AAGNNNNNCTT	4 cut(s)	597, 629, 980, 1012
FaqI	GGGAC	1 cut(s)	290
FatI	CATG	2 cut(s)	171, 1128
FblI	GTMKAC	1 cut(s)	150
Fnu4HI	GCNGC	2 cut(s)	373, 792
FokI	GGATG	3 cut(s)	234, 639, 1145
FriOI	GRGCYC	1 cut(s)	45
Fsp4HI	GCNGC	2 cut(s)	373, 792
FspBI	CTAG	2 cut(s)	384, 852
GlaI	GCGC	1 cut(s)	371
GluI	GCNGC	2 cut(s)	373, 792
HaeII	RGCGCY	1 cut(s)	373
HaeIII	GGCC	2 cut(s)	651, 1127
HapII	CCGG	4 cut(s)	48, 251, 656, 939
HhaI	GCGC	1 cut(s)	372
Hin1II	CATG	2 cut(s)	175, 1132
Hin6I	GCGC	1 cut(s)	370
HinP1I	GCGC	1 cut(s)	370
HincII	GTYRAC	1 cut(s)	993
HindII	GTYRAC	1 cut(s)	993
HindIII	AAGCTT	2 cut(s)	419, 809
HinfI	GANTC	1 cut(s)	413
HpaII	CCGG	4 cut(s)	48, 251, 656, 939
HphI	GGTGA	9 cut(s)	62, 206, 500, 524, 546, 567, 667, 988, 1186
Hpy166II	GTNNAC	6 cut(s)	53, 151, 445, 675, 979, 993
Hpy188I	TCNGA	3 cut(s)	13, 88, 1098
Hpy8I	GTNNAC	6 cut(s)	53, 151, 445, 675, 979, 993
HpyCH4III	ACNGT	2 cut(s)	203, 761
HpyCH4IV	ACGT	1 cut(s)	303
HpyCH4V	TGCA	5 cut(s)	108, 130, 747, 1092, 1266
HpyF10VI	GCNNNNNNNGC	2 cut(s)	744, 753
HpyF3I	CTNAG	6 cut(s)	285, 417, 715, 1074, 1139, 1259
HpySE526I	ACGT	1 cut(s)	303
Hsp92II	CATG	2 cut(s)	175, 1132
HspAI	GCGC	1 cut(s)	370
Kpn2I	TCCGGA	2 cut(s)	250, 655
Kzo9I	GATC	8 cut(s)	8, 404, 432, 803, 832, 1050, 1063, 1217
LguI	GCTCTTC	1 cut(s)	33
Lsp1109I	GCAGC	2 cut(s)	359, 778
LweI	GCATC	4 cut(s)	117, 256, 370, 1014
MaeI	CTAG	2 cut(s)	384, 852
MaeII	ACGT	1 cut(s)	303
MaeIII	GTNAC	2 cut(s)	552, 573
MalI	GATC	8 cut(s)	10, 406, 434, 805, 834, 1052, 1065, 1219
MboI	GATC	8 cut(s)	8, 404, 432, 803, 832, 1050, 1063, 1217
MboII	GAAGA	9 cut(s)	50, 503, 614, 617, 647, 755, 959, 1073, 1208
MflI	RGATCY	2 cut(s)	404, 1050
MhlI	GDGCHC	1 cut(s)	45
MluCI	AATT	4 cut(s)	113, 233, 297, 775
MlyI	GAGTC	1 cut(s)	407
Mph1103I	ATGCAT	1 cut(s)	1094
MroI	TCCGGA	2 cut(s)	250, 655
MroXI	GAANNNNTTC	2 cut(s)	18, 179
MseI	TTAA	4 cut(s)	207, 300, 453, 998
MslI	CAYNNNNRTG	1 cut(s)	477
MspI	CCGG	4 cut(s)	48, 251, 656, 939
MspR9I	CCNGG	1 cut(s)	940
Mva1269I	GAATGC	1 cut(s)	1092
MwoI	GCNNNNNNNGC	2 cut(s)	744, 753
NciI	CCSGG	1 cut(s)	940
NcoI	CCATGG	1 cut(s)	1128
NdeII	GATC	8 cut(s)	8, 404, 432, 803, 832, 1050, 1063, 1217
NlaIII	CATG	2 cut(s)	175, 1132
NmuCI	GTSAC	2 cut(s)	552, 573
NsiI	ATGCAT	1 cut(s)	1094
NspV	TTCGAA	2 cut(s)	645, 960
PagI	TCATGA	1 cut(s)	171
PciSI	GCTCTTC	1 cut(s)	33
PcsI	WCGNNNNNNNCGW	1 cut(s)	735
PctI	GAATGC	1 cut(s)	1092
PdmI	GAANNNNTTC	2 cut(s)	18, 179
PkrI	GCNGC	2 cut(s)	374, 793
PleI	GAGTC	1 cut(s)	407
PpsI	GAGTC	1 cut(s)	407
PsiI	TTATAA	1 cut(s)	1107
Psp124BI	GAGCTC	1 cut(s)	45
PsuI	RGATCY	2 cut(s)	404, 1050
RsaI	GTAC	2 cut(s)	351, 856
RsaNI	GTAC	2 cut(s)	350, 855
RseI	CAYNNNNRTG	1 cut(s)	477
SacI	GAGCTC	1 cut(s)	45
SapI	GCTCTTC	1 cut(s)	33
SaqAI	TTAA	4 cut(s)	207, 300, 453, 998
SatI	GCNGC	2 cut(s)	373, 792
Sau3AI	GATC	8 cut(s)	8, 404, 432, 803, 832, 1050, 1063, 1217
ScaI	AGTACT	2 cut(s)	351, 856
SchI	GAGTC	1 cut(s)	407
ScrFI	CCNGG	1 cut(s)	940
SduI	GDGCHC	1 cut(s)	45
SfaNI	GCATC	4 cut(s)	117, 256, 370, 1014
SfcI	CTRYAG	1 cut(s)	1190
SfuI	TTCGAA	2 cut(s)	645, 960
SmiMI	CAYNNNNRTG	1 cut(s)	477
SmlI	CTYRAG	1 cut(s)	819
SmoI	CTYRAG	1 cut(s)	819
Sse9I	AATT	4 cut(s)	113, 233, 297, 775
SsiI	CCGC	1 cut(s)	535
SspMI	CTAG	2 cut(s)	384, 852
SstI	GAGCTC	1 cut(s)	45
StyD4I	CCNGG	1 cut(s)	938
StyI	CCWWGG	1 cut(s)	1128
TaaI	ACNGT	2 cut(s)	203, 761
TaiI	ACGT	1 cut(s)	306
TaqI	TCGA	9 cut(s)	7, 28, 111, 358, 435, 645, 729, 960, 1153
TasI	AATT	4 cut(s)	113, 233, 297, 775
TatI	WGTACW	2 cut(s)	349, 854
Tru1I	TTAA	4 cut(s)	207, 300, 453, 998
Tru9I	TTAA	4 cut(s)	207, 300, 453, 998
TscAI	CASTG	2 cut(s)	598, 1078
TseFI	GTSAC	2 cut(s)	552, 573
TseI	GCWGC	2 cut(s)	372, 791
Tsp45I	GTSAC	2 cut(s)	552, 573
TspDTI	ATGAA	4 cut(s)	188, 455, 605, 1149
TspRI	CASTG	2 cut(s)	598, 1078
XapI	RAATTY	2 cut(s)	113, 775
XmiI	GTMKAC	1 cut(s)	150
XmnI	GAANNNNTTC	2 cut(s)	18, 179
XspI	CTAG	2 cut(s)	384, 852
ZrmI	AGTACT	2 cut(s)	351, 856
Zsp2I	ATGCAT	1 cut(s)	1094

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.