Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001478

Physical Location & Seq

Genomic Coordinates Reverse (-)

22644130 .. 22645209

Gene Structure 1080 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG250100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGTTCCGGGACTGATTTCGTTTCGAGAAGAAGAAGAGCTTTCAGGGACTTCCAAGATGATCAATAAGACAACAGAAGGAGGTATCCGAAAACTTACCAGAGGTGACTACTTCACATATCTAAAGGCAGTAAGGGACGTACTTGAAGACGAAGAGAAAATCTACCACGACTTCACTCAACTCCTGAAAGACTATAGTACCCAAAGACTTGATCTTGAAAGTGTGATAGATATGGTGAAAATTTTATTTGAAGGGCATCCAGATTTACTAATGGGTTTCAATACCTTCTTGCCAAAGGGATATGAAATCACCATCACACCAACCACTCCTGATTTCGTATCCGAAGAAGCTCTCACTTTTGTGAAAAGGGTAAAGGCACGATTTCAAGATGAATATCATGTTTATCTATCTTTTATTGAAATCTTAAAAGGTGAAAACAAGTCCAGAATTTTCCCAAAGGTTGCAGCACTTTTCCGAGATCACCCAGACTTGATTGATGAATTCACTCACTTTCTTCCAAGTGAACCTTCCTGTTCTATTGACCTCTCTAACTGTGAGACTTGCACTCCAAGTTACCATGTTTTGCCAGAGGATTACCCGATTCCTGCTGCTACCCGAAGAACATTGCTTGATTCTCAAGTACTGAATGATCGAGTCTGCATCACTCCTTCAGCTGCTTCCTGTTCAAGAGGAATACACAAAAGCCGATGTGAGCAGAGCCTATTTCAGTGTGAAAATGACATGTTCGAACTTGATATGTTGTTAAGTTCTGTGAATTCAACGATAGGGAGTGTGGAACAGCTAATACAGAAGATTGAAAACAATAGTATTAGTGCATCAATTTGTCTTGAAGATCACCTTACGGTTCTCAATCTGAGGTGCATTGAGAGATTGTATGGTAAACAAGGGCTTGAAGTGGTGGATCTGTTGAGGGAAAATGCTGATGCGGCTCTGCCTGTTATATTAGTCCGACTGAAGCAAAAGCAAGAAGAGTGGGAACAATGTCGCTCGGATTTTAGTCAAGTTTGGGCTCAAGTATATGCCAAGAACCTTAACAATCAAGCTAATCATGATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000785 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0098732 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

359

Amino Acids

41.09

Weight (kDa)

4.98

Isoelectric Point (pI)

45.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAH	PF02671	54 - 97	1.8e-14	Paired amphipathic helix repeat
PAH	PF02671	133 - 172	1e-06	Paired amphipathic helix repeat
Sin3_corepress	PF08295	187 - 276	3.2e-20	Sin3 family co-repressor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23810 AT1G24210 AT1G24220 AT1G24220 AT1G24230 AT1G24250 AT1G27240 AT1G27260 AT1G27270 AT1G27280
fragaria_vesca	FvH4_3g01921 FvH4_3g01930 FvH4_5g11770 FvH4_5g22630
malus_domestica	MD08G1247800.v1.1
pyrus_communis	pycom08g21470 pycom15g39040
rosa_chinensis	RchiOBHm_Chr5g0002831 RchiOBHm_Chr5g0002841
rosa_laevigata	RLG00000003026 RLG00000003029 RLG00000031063 RLG00000031064
rosa_multiflora	Rmu_co8115592.1_g000001 Rmu_co8158784.1_g000001 Rmu_sc0012670.1_g000008 Rmu_sc0012670.1_g000009 Rmu_sc0013603.1_g000011 Rmu_sc0013603.1_g000012
rosa_roxburghii	Rroxscaffold_1G00073010 Rroxscaffold_1G00073020 Rroxscaffold_3G00248150
rosa_rugosa	Rorug04G0400000 Rorug04G0400100
rosa_samantha	Rh5AG022900 Rh5BG025500 Rh5BG025600 Rh5CG025400 Rh5CG025500 Rh5DG024000 Rh5DG024100 Rh7AG255700 Rh7AG256500 Rh7BG250100 Rh7CG272100 Rh7CG272900 Rh7CG273000 Rh7DG262900
rosa_wichuraiana	Rw5G002120 Rw5G002140 Rw7G021870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	947
AclWI	GGATC	1 cut(s)	930
AcsI	RAATTY	4 cut(s)	240, 447, 500, 775
AcuI	CTGAAG	2 cut(s)	654, 995
AfaI	GTAC	3 cut(s)	141, 199, 642
AflIII	ACRYGT	1 cut(s)	741
AjuI	GAANNNNNNNTTGG	2 cut(s)	511, 543
AleI	CACNNNNGTG	1 cut(s)	359
AluBI	AGCT	5 cut(s)	40, 350, 674, 802, 1064
AluI	AGCT	5 cut(s)	40, 350, 674, 802, 1064
Alw26I	GTCTC	1 cut(s)	551
AlwI	GGATC	1 cut(s)	930
ApeKI	GCWGC	3 cut(s)	464, 608, 674
ApoI	RAATTY	4 cut(s)	240, 447, 500, 775
AsuC2I	CCSGG	1 cut(s)	9
AsuHPI	GGTGA	6 cut(s)	116, 247, 301, 443, 473, 848
AsuII	TTCGAA	1 cut(s)	747
BaeI	ACNNNNGTAYC	2 cut(s)	181, 214
BanII	GRGCYC	1 cut(s)	1033
BbsI	GAAGAC	1 cut(s)	153
BbvI	GCAGC	3 cut(s)	476, 595, 661
BccI	CCATC	1 cut(s)	320
BciVI	GTATCC	2 cut(s)	95, 349
BclI	TGATCA	1 cut(s)	60
BcnI	CCSGG	1 cut(s)	9
BcoDI	GTCTC	1 cut(s)	551
BfmI	CTRYAG	1 cut(s)	193
BfuI	GTATCC	2 cut(s)	95, 349
BisI	GCNGC	4 cut(s)	465, 609, 675, 948
BlsI	GCNGC	4 cut(s)	466, 610, 676, 949
BmcAI	AGTACT	1 cut(s)	642
Bme1390I	CCNGG	1 cut(s)	9
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	9
BmsI	GCATC	4 cut(s)	265, 669, 845, 934
BpiI	GAAGAC	1 cut(s)	153
Bpu14I	TTCGAA	1 cut(s)	747
BpuEI	CTTGAG	2 cut(s)	621, 1017
BpuMI	CCSGG	1 cut(s)	9
BsaBI	GATNNNNATC	1 cut(s)	393
BsaXI	ACNNNNNCTCC	2 cut(s)	550, 580
Bse3DI	GCAATG	1 cut(s)	623
Bse8I	GATNNNNATC	1 cut(s)	393
BseGI	GGATG	1 cut(s)	256
BseJI	GATNNNNATC	1 cut(s)	393
BseMI	GCAATG	1 cut(s)	623
BseMII	CTCAG	1 cut(s)	866
BseXI	GCAGC	3 cut(s)	476, 595, 661
BsiSI	CCGG	1 cut(s)	8
BslFI	GGGAC	3 cut(s)	24, 61, 149
BsmAI	GTCTC	1 cut(s)	551
BsmFI	GGGAC	3 cut(s)	24, 61, 149
Bsp119I	TTCGAA	1 cut(s)	747
Bsp1286I	GDGCHC	1 cut(s)	1033
Bsp143I	GATC	6 cut(s)	60, 211, 478, 649, 853, 922
BspACI	CCGC	1 cut(s)	947
BspCNI	CTCAG	1 cut(s)	867
BspHI	TCATGA	1 cut(s)	1069
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	930
BspQI	GCTCTTC	1 cut(s)	30
BspT104I	TTCGAA	1 cut(s)	747
BsrDI	GCAATG	1 cut(s)	623
BssMI	GATC	6 cut(s)	60, 211, 478, 649, 853, 922
Bst4CI	ACNGT	2 cut(s)	554, 865
Bst6I	CTCTTC	3 cut(s)	30, 147, 984
BstBI	TTCGAA	1 cut(s)	747
BstDEI	CTNAG	1 cut(s)	875
BstF5I	GGATG	1 cut(s)	256
BstKTI	GATC	6 cut(s)	63, 214, 481, 652, 856, 925
BstMAI	GTCTC	1 cut(s)	551
BstMBI	GATC	6 cut(s)	60, 211, 478, 649, 853, 922
BstMWI	GCNNNNNNNGC	1 cut(s)	947
BstNSI	RCATGY	1 cut(s)	745
BstSCI	CCNGG	1 cut(s)	7
BstSFI	CTRYAG	1 cut(s)	193
BstV1I	GCAGC	3 cut(s)	476, 595, 661
BstV2I	GAAGAC	1 cut(s)	153
BstX2I	RGATCY	1 cut(s)	922
BstYI	RGATCY	1 cut(s)	922
BsuI	GTATCC	2 cut(s)	95, 349
BtsCI	GGATG	1 cut(s)	256
BtsIMutI	CAGTG	1 cut(s)	734
CciI	TCATGA	1 cut(s)	1069
Csp6I	GTAC	3 cut(s)	140, 198, 641
CspCI	CAANNNNNGTGG	2 cut(s)	974, 1009
CviAII	CATG	4 cut(s)	398, 578, 742, 1070
CviQI	GTAC	3 cut(s)	140, 198, 641
DdeI	CTNAG	1 cut(s)	875
DpnI	GATC	6 cut(s)	62, 213, 480, 651, 855, 924
DpnII	GATC	6 cut(s)	60, 211, 478, 649, 853, 922
Eam1104I	CTCTTC	3 cut(s)	30, 147, 984
EarI	CTCTTC	3 cut(s)	30, 147, 984
Eco24I	GRGCYC	1 cut(s)	1033
Eco57I	CTGAAG	2 cut(s)	654, 995
EcoRI	GAATTC	2 cut(s)	500, 775
EcoT38I	GRGCYC	1 cut(s)	1033
FaeI	CATG	4 cut(s)	401, 581, 745, 1073
FalI	AAGNNNNNCTT	6 cut(s)	24, 56, 511, 543, 843, 875
FaqI	GGGAC	3 cut(s)	24, 61, 149
FatI	CATG	4 cut(s)	397, 577, 741, 1069
FbaI	TGATCA	1 cut(s)	60
Fnu4HI	GCNGC	4 cut(s)	465, 609, 675, 948
FokI	GGATG	1 cut(s)	243
FriOI	GRGCYC	1 cut(s)	1033
Fsp4HI	GCNGC	4 cut(s)	465, 609, 675, 948
GluI	GCNGC	4 cut(s)	465, 609, 675, 948
HapII	CCGG	1 cut(s)	8
Hin1II	CATG	4 cut(s)	401, 581, 745, 1073
HinfI	GANTC	3 cut(s)	601, 632, 654
HpaII	CCGG	1 cut(s)	8
HphI	GGTGA	6 cut(s)	116, 247, 301, 443, 473, 848
Hpy166II	GTNNAC	2 cut(s)	524, 902
Hpy188I	TCNGA	6 cut(s)	89, 343, 476, 876, 971, 1012
Hpy8I	GTNNAC	2 cut(s)	524, 902
HpyAV	CCTTC	5 cut(s)	71, 245, 295, 537, 678
HpyCH4III	ACNGT	2 cut(s)	554, 865
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	5 cut(s)	464, 564, 660, 836, 882
HpyF10VI	GCNNNNNNNGC	1 cut(s)	947
HpyF3I	CTNAG	1 cut(s)	875
HpySE526I	ACGT	1 cut(s)	138
Hsp92II	CATG	4 cut(s)	401, 581, 745, 1073
Ksp22I	TGATCA	1 cut(s)	60
Kzo9I	GATC	6 cut(s)	60, 211, 478, 649, 853, 922
LguI	GCTCTTC	1 cut(s)	30
Lsp1109I	GCAGC	3 cut(s)	476, 595, 661
LweI	GCATC	4 cut(s)	265, 669, 845, 934
MaeII	ACGT	1 cut(s)	138
MaeIII	GTNAC	2 cut(s)	104, 572
MalI	GATC	6 cut(s)	62, 213, 480, 651, 855, 924
MboI	GATC	6 cut(s)	60, 211, 478, 649, 853, 922
MflI	RGATCY	1 cut(s)	922
MhlI	GDGCHC	1 cut(s)	1033
MluCI	AATT	5 cut(s)	240, 447, 500, 775, 840
MlyI	GAGTC	1 cut(s)	663
MmeI	TCCRAC	1 cut(s)	994
MnlI	CCTC	7 cut(s)	74, 95, 554, 583, 683, 870, 924
MseI	TTAA	4 cut(s)	425, 764, 1053, 1078
MslI	CAYNNNNRTG	1 cut(s)	359
MspA1I	CMGCKG	1 cut(s)	674
MspI	CCGG	1 cut(s)	8
MspR9I	CCNGG	1 cut(s)	9
MwoI	GCNNNNNNNGC	1 cut(s)	947
NciI	CCSGG	1 cut(s)	9
NdeII	GATC	6 cut(s)	60, 211, 478, 649, 853, 922
NlaIII	CATG	4 cut(s)	401, 581, 745, 1073
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	104
NspI	RCATGY	1 cut(s)	745
NspV	TTCGAA	1 cut(s)	747
OliI	CACNNNNGTG	1 cut(s)	359
PagI	TCATGA	1 cut(s)	1069
PciI	ACATGT	1 cut(s)	741
PciSI	GCTCTTC	1 cut(s)	30
PfeI	GAWTC	2 cut(s)	601, 632
PfoI	TCCNGGA	1 cut(s)	7
PkrI	GCNGC	4 cut(s)	466, 610, 676, 949
PleI	GAGTC	1 cut(s)	662
PpsI	GAGTC	1 cut(s)	662
PscI	ACATGT	1 cut(s)	741
PspN4I	GGNNCC	1 cut(s)	6
PsrI	GAACNNNNNNTAC	2 cut(s)	789, 821
PsuI	RGATCY	1 cut(s)	922
PvuII	CAGCTG	1 cut(s)	674
RsaI	GTAC	3 cut(s)	141, 199, 642
RsaNI	GTAC	3 cut(s)	140, 198, 641
RseI	CAYNNNNRTG	1 cut(s)	359
SapI	GCTCTTC	1 cut(s)	30
SaqAI	TTAA	4 cut(s)	425, 764, 1053, 1078
SatI	GCNGC	4 cut(s)	465, 609, 675, 948
Sau3AI	GATC	6 cut(s)	60, 211, 478, 649, 853, 922
ScaI	AGTACT	1 cut(s)	642
SchI	GAGTC	1 cut(s)	663
ScrFI	CCNGG	1 cut(s)	9
SduI	GDGCHC	1 cut(s)	1033
SfaNI	GCATC	4 cut(s)	265, 669, 845, 934
SfcI	CTRYAG	1 cut(s)	193
SfuI	TTCGAA	1 cut(s)	747
SmiMI	CAYNNNNRTG	1 cut(s)	359
SmlI	CTYRAG	2 cut(s)	636, 1032
SmoI	CTYRAG	2 cut(s)	636, 1032
Sse9I	AATT	5 cut(s)	240, 447, 500, 775, 840
SsiI	CCGC	1 cut(s)	947
StyD4I	CCNGG	1 cut(s)	7
TaaI	ACNGT	2 cut(s)	554, 865
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	3 cut(s)	25, 652, 747
TasI	AATT	5 cut(s)	240, 447, 500, 775, 840
TatI	WGTACW	1 cut(s)	640
TauI	GCSGC	1 cut(s)	950
TfiI	GAWTC	2 cut(s)	601, 632
Tru1I	TTAA	4 cut(s)	425, 764, 1053, 1078
Tru9I	TTAA	4 cut(s)	425, 764, 1053, 1078
TscAI	CASTG	1 cut(s)	734
TseFI	GTSAC	1 cut(s)	104
TseI	GCWGC	3 cut(s)	464, 608, 674
Tsp45I	GTSAC	1 cut(s)	104
TspDTI	ATGAA	3 cut(s)	318, 405, 513
TspRI	CASTG	1 cut(s)	734
XapI	RAATTY	4 cut(s)	240, 447, 500, 775
XceI	RCATGY	1 cut(s)	745
ZrmI	AGTACT	1 cut(s)	642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.