Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012670.1

Orthogroup ID

OG0001478

Physical Location & Seq

Genomic Coordinates Forward (+)

36642 .. 37664

Gene Structure 1023 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012670.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

atgatcaataagacaacagaaggaggtatccgaaaacttaccagaggtgactacttcacatatctaaaggcagtaagggacgtacttgaagacgaagagaaaacctaccacgacttcactcaactcctgaaagactatagtacccaaagacttgatcttgaaagtgtgatagatatggtgaaaattttatttgaagggcatccagatttactaatgggtttcaataccttcttgccaaagggatatgaaatcaccatcacaccaaccactcctgatttcgtatccgaagaagctctcacttttgtgaaaagggtaaaggcacgatttcaagatgaatatcatgtttatctatcttttattgaaatcttgaaaggtgaaaacaagtccagaattttcccaaaggttgcagcacttttccgagatcattcagacttgattgatgaattcactcactttcttccaagtgaaccttcctgttctattgacctctctaactgtgagacttgcactccaagttaccatgttttgccagaggattacccgattcctgctgctacccgaagaacattgcttgattctcaagtattgaatgatcgagtctgcatcactccttcagctgcttcctgttcaagaggaatacacaaaagccgatgtgagcagagcctatttcagtgtgaaaatgacatgttcgaacttgatatgttgttaagttctgtgaattcaacgatagggagtgtggaacagctaatacagaagattgaaaacaatagtattagtgcatcaatttgtcttgaagatcacttgacggttctcaatctgaggtgcattgagagactgtatggtaaacaagggcttgaagtggtggacctgttgagggaaaatgctgaattggctcttcctgttatattagtccgactgaagcaaaagcaagaagagtgggaacaatgtcgctcggattttagtcaagtttgggctcaagtatatgccaagaaccttaacaatcaagctaatcatgatgtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000785 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0098732 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

340

Amino Acids

39.03

Weight (kDa)

5.05

Isoelectric Point (pI)

44.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23810 AT1G24210 AT1G24220 AT1G24220 AT1G24230 AT1G24250 AT1G27240 AT1G27260 AT1G27270 AT1G27280
fragaria_vesca	FvH4_3g01921 FvH4_3g01930 FvH4_5g11770 FvH4_5g22630
malus_domestica	MD08G1247800.v1.1
pyrus_communis	pycom08g21470 pycom15g39040
rosa_chinensis	RchiOBHm_Chr5g0002831 RchiOBHm_Chr5g0002841
rosa_laevigata	RLG00000003026 RLG00000003029 RLG00000031063 RLG00000031064
rosa_multiflora	Rmu_co8115592.1_g000001 Rmu_co8158784.1_g000001 Rmu_sc0012670.1_g000008 Rmu_sc0012670.1_g000009 Rmu_sc0013603.1_g000011 Rmu_sc0013603.1_g000012
rosa_roxburghii	Rroxscaffold_1G00073010 Rroxscaffold_1G00073020 Rroxscaffold_3G00248150
rosa_rugosa	Rorug04G0400000 Rorug04G0400100
rosa_samantha	Rh5AG022900 Rh5BG025500 Rh5BG025600 Rh5CG025400 Rh5CG025500 Rh5DG024000 Rh5DG024100 Rh7AG255700 Rh7AG256500 Rh7BG250100 Rh7CG272100 Rh7CG272900 Rh7CG273000 Rh7DG262900
rosa_wichuraiana	Rw5G002120 Rw5G002140 Rw7G021870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	4 cut(s)	183, 390, 443, 718
AcuI	CTGAAG	2 cut(s)	597, 938
AfaI	GTAC	2 cut(s)	84, 142
AfiI	CCNNNNNNNGG	1 cut(s)	874
AflIII	ACRYGT	1 cut(s)	684
AjuI	GAANNNNNNNTTGG	2 cut(s)	454, 486
AleI	CACNNNNGTG	1 cut(s)	302
AluBI	AGCT	4 cut(s)	293, 617, 745, 1007
AluI	AGCT	4 cut(s)	293, 617, 745, 1007
Alw26I	GTCTC	2 cut(s)	494, 826
ApeKI	GCWGC	3 cut(s)	407, 551, 617
ApoI	RAATTY	4 cut(s)	183, 390, 443, 718
AspS9I	GGNCC	1 cut(s)	865
AsuHPI	GGTGA	4 cut(s)	59, 190, 244, 386
AsuII	TTCGAA	1 cut(s)	690
AvaII	GGWCC	1 cut(s)	865
BaeI	ACNNNNGTAYC	2 cut(s)	124, 157
BanII	GRGCYC	1 cut(s)	976
BbsI	GAAGAC	1 cut(s)	96
BbvI	GCAGC	3 cut(s)	419, 538, 604
BccI	CCATC	1 cut(s)	263
BciVI	GTATCC	2 cut(s)	38, 292
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	2 cut(s)	494, 826
BfmI	CTRYAG	1 cut(s)	136
BfuI	GTATCC	2 cut(s)	38, 292
BisI	GCNGC	3 cut(s)	408, 552, 618
BlsI	GCNGC	3 cut(s)	409, 553, 619
Bme18I	GGWCC	1 cut(s)	865
BmgT120I	GGNCC	1 cut(s)	865
BmsI	GCATC	3 cut(s)	208, 612, 788
BpiI	GAAGAC	1 cut(s)	96
Bpu14I	TTCGAA	1 cut(s)	690
BpuEI	CTTGAG	2 cut(s)	564, 960
BsaBI	GATNNNNATC	1 cut(s)	336
BsaXI	ACNNNNNCTCC	2 cut(s)	493, 523
Bsc4I	CCNNNNNNNGG	1 cut(s)	874
Bse3DI	GCAATG	1 cut(s)	566
Bse8I	GATNNNNATC	1 cut(s)	336
BseGI	GGATG	1 cut(s)	199
BseJI	GATNNNNATC	1 cut(s)	336
BseLI	CCNNNNNNNGG	1 cut(s)	874
BseMI	GCAATG	1 cut(s)	566
BseMII	CTCAG	1 cut(s)	809
BseXI	GCAGC	3 cut(s)	419, 538, 604
BslFI	GGGAC	1 cut(s)	92
BslI	CCNNNNNNNGG	1 cut(s)	874
BsmAI	GTCTC	2 cut(s)	494, 826
BsmFI	GGGAC	1 cut(s)	92
Bsp119I	TTCGAA	1 cut(s)	690
Bsp1286I	GDGCHC	1 cut(s)	976
Bsp143I	GATC	5 cut(s)	3, 154, 421, 592, 796
BspCNI	CTCAG	1 cut(s)	810
BspHI	TCATGA	1 cut(s)	1012
BspQI	GCTCTTC	1 cut(s)	900
BspT104I	TTCGAA	1 cut(s)	690
BsrDI	GCAATG	1 cut(s)	566
BssMI	GATC	5 cut(s)	3, 154, 421, 592, 796
Bst4CI	ACNGT	3 cut(s)	497, 808, 837
Bst6I	CTCTTC	3 cut(s)	90, 900, 927
BstBI	TTCGAA	1 cut(s)	690
BstDEI	CTNAG	1 cut(s)	818
BstF5I	GGATG	1 cut(s)	199
BstKTI	GATC	5 cut(s)	6, 157, 424, 595, 799
BstMAI	GTCTC	2 cut(s)	494, 826
BstMBI	GATC	5 cut(s)	3, 154, 421, 592, 796
BstMWI	GCNNNNNNNGC	1 cut(s)	890
BstNSI	RCATGY	1 cut(s)	688
BstSFI	CTRYAG	1 cut(s)	136
BstV1I	GCAGC	3 cut(s)	419, 538, 604
BstV2I	GAAGAC	1 cut(s)	96
BsuI	GTATCC	2 cut(s)	38, 292
BtsCI	GGATG	1 cut(s)	199
BtsIMutI	CAGTG	1 cut(s)	677
CciI	TCATGA	1 cut(s)	1012
Cfr13I	GGNCC	1 cut(s)	865
Csp6I	GTAC	2 cut(s)	83, 141
CspCI	CAANNNNNGTGG	2 cut(s)	917, 952
CviAII	CATG	4 cut(s)	341, 521, 685, 1013
CviJI	RGCY	9 cut(s)	293, 617, 648, 663, 745, 853, 893, 974, 1007
CviKI_1	RGCY	9 cut(s)	293, 617, 648, 663, 745, 853, 893, 974, 1007
CviQI	GTAC	2 cut(s)	83, 141
DdeI	CTNAG	1 cut(s)	818
DpnI	GATC	5 cut(s)	5, 156, 423, 594, 798
DpnII	GATC	5 cut(s)	3, 154, 421, 592, 796
Eam1104I	CTCTTC	3 cut(s)	90, 900, 927
EarI	CTCTTC	3 cut(s)	90, 900, 927
Eco24I	GRGCYC	1 cut(s)	976
Eco47I	GGWCC	1 cut(s)	865
Eco57I	CTGAAG	2 cut(s)	597, 938
EcoRI	GAATTC	2 cut(s)	443, 718
EcoT38I	GRGCYC	1 cut(s)	976
FaeI	CATG	4 cut(s)	344, 524, 688, 1016
FalI	AAGNNNNNCTT	2 cut(s)	454, 486
FaqI	GGGAC	1 cut(s)	92
FatI	CATG	4 cut(s)	340, 520, 684, 1012
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	3 cut(s)	408, 552, 618
FokI	GGATG	1 cut(s)	186
FriOI	GRGCYC	1 cut(s)	976
Fsp4HI	GCNGC	3 cut(s)	408, 552, 618
GluI	GCNGC	3 cut(s)	408, 552, 618
Hin1II	CATG	4 cut(s)	344, 524, 688, 1016
HinfI	GANTC	3 cut(s)	544, 575, 597
HphI	GGTGA	4 cut(s)	59, 190, 244, 386
Hpy166II	GTNNAC	3 cut(s)	467, 845, 865
Hpy188I	TCNGA	7 cut(s)	32, 286, 419, 430, 819, 914, 955
Hpy8I	GTNNAC	3 cut(s)	467, 845, 865
HpyAV	CCTTC	5 cut(s)	14, 188, 238, 480, 621
HpyCH4III	ACNGT	3 cut(s)	497, 808, 837
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	5 cut(s)	407, 507, 603, 779, 825
HpyF10VI	GCNNNNNNNGC	1 cut(s)	890
HpyF3I	CTNAG	1 cut(s)	818
HpySE526I	ACGT	1 cut(s)	81
Hsp92II	CATG	4 cut(s)	344, 524, 688, 1016
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	5 cut(s)	3, 154, 421, 592, 796
LguI	GCTCTTC	1 cut(s)	900
Lsp1109I	GCAGC	3 cut(s)	419, 538, 604
LweI	GCATC	3 cut(s)	208, 612, 788
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	2 cut(s)	47, 515
MalI	GATC	5 cut(s)	5, 156, 423, 594, 798
MboI	GATC	5 cut(s)	3, 154, 421, 592, 796
MboII	GAAGA	9 cut(s)	101, 107, 299, 449, 573, 766, 806, 887, 944
MhlI	GDGCHC	1 cut(s)	976
MluCI	AATT	6 cut(s)	183, 390, 443, 718, 783, 887
MlyI	GAGTC	1 cut(s)	606
MmeI	TCCRAC	1 cut(s)	937
MnlI	CCTC	7 cut(s)	17, 38, 497, 526, 626, 813, 867
MseI	TTAA	3 cut(s)	707, 996, 1021
MslI	CAYNNNNRTG	1 cut(s)	302
MspA1I	CMGCKG	1 cut(s)	617
MwoI	GCNNNNNNNGC	1 cut(s)	890
NdeII	GATC	5 cut(s)	3, 154, 421, 592, 796
NlaIII	CATG	4 cut(s)	344, 524, 688, 1016
NmuCI	GTSAC	1 cut(s)	47
NspI	RCATGY	1 cut(s)	688
NspV	TTCGAA	1 cut(s)	690
OliI	CACNNNNGTG	1 cut(s)	302
PagI	TCATGA	1 cut(s)	1012
PciI	ACATGT	1 cut(s)	684
PciSI	GCTCTTC	1 cut(s)	900
PfeI	GAWTC	2 cut(s)	544, 575
PkrI	GCNGC	3 cut(s)	409, 553, 619
PleI	GAGTC	1 cut(s)	605
PpsI	GAGTC	1 cut(s)	605
PscI	ACATGT	1 cut(s)	684
PspPI	GGNCC	1 cut(s)	865
PsrI	GAACNNNNNNTAC	2 cut(s)	732, 764
PvuII	CAGCTG	1 cut(s)	617
RsaI	GTAC	2 cut(s)	84, 142
RsaNI	GTAC	2 cut(s)	83, 141
RseI	CAYNNNNRTG	1 cut(s)	302
SapI	GCTCTTC	1 cut(s)	900
SaqAI	TTAA	3 cut(s)	707, 996, 1021
SatI	GCNGC	3 cut(s)	408, 552, 618
Sau3AI	GATC	5 cut(s)	3, 154, 421, 592, 796
Sau96I	GGNCC	1 cut(s)	865
SchI	GAGTC	1 cut(s)	606
SduI	GDGCHC	1 cut(s)	976
SfaNI	GCATC	3 cut(s)	208, 612, 788
SfcI	CTRYAG	1 cut(s)	136
SfuI	TTCGAA	1 cut(s)	690
SinI	GGWCC	1 cut(s)	865
SmiMI	CAYNNNNRTG	1 cut(s)	302
SmlI	CTYRAG	2 cut(s)	579, 975
SmoI	CTYRAG	2 cut(s)	579, 975
Sse9I	AATT	6 cut(s)	183, 390, 443, 718, 783, 887
TaaI	ACNGT	3 cut(s)	497, 808, 837
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	2 cut(s)	595, 690
TasI	AATT	6 cut(s)	183, 390, 443, 718, 783, 887
TfiI	GAWTC	2 cut(s)	544, 575
Tru1I	TTAA	3 cut(s)	707, 996, 1021
Tru9I	TTAA	3 cut(s)	707, 996, 1021
TscAI	CASTG	1 cut(s)	677
TseFI	GTSAC	1 cut(s)	47
TseI	GCWGC	3 cut(s)	407, 551, 617
Tsp45I	GTSAC	1 cut(s)	47
TspDTI	ATGAA	3 cut(s)	261, 348, 456
TspRI	CASTG	1 cut(s)	677
VpaK11BI	GGWCC	1 cut(s)	865
XapI	RAATTY	4 cut(s)	183, 390, 443, 718
XceI	RCATGY	1 cut(s)	688

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.