Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8158784.1

Orthogroup ID

OG0001478

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 659

Gene Structure 659 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8158784.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 659 bp

tttatctatcttttattgaaatcttgaaaggtgaaaacaagtccagaattttcccaaaggttgcagcacttttccgagatcattcagacttgattgatgaattcactcactttcttccaagtgaaccttcctgttctattgacctctctaactgtgagacttgcactccaagttaccatgttttgccagaggattacccgattcctgctgctacccgaagaacattgcttgattctcaagtattgaatgatcgagtctgcatcactccttcagctgcttcctgttcaagaggaatacacaaaagccgatgtgagcagagcctatttcagtgtgaaaatgacatgttcgaacttgatatgttgttaagttctgtgaattcaacgatagggagtgtggaacagctaatacagaagattgaaaacaatagtattagtgcatcaatttgtcttgaagatcacttgacggttctcaatctgaggtgcattgagagactgtatggtaaacaagggcttgaagtggtggacctgttgagggaaaatgctgaattggctcttcctgttatattagtccgactgaagcaaaagcaagaagagtgggaacaatgtcgctcggattttagtcaagtttgggctcaagtatatgccaagaaccttaacaat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000785 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0033993 GO:0035601 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0097305 GO:0098732 GO:1901564 GO:1901700 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

219

Amino Acids

24.91

Weight (kDa)

4.99

Isoelectric Point (pI)

55.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23810 AT1G24210 AT1G24220 AT1G24220 AT1G24230 AT1G24250 AT1G27240 AT1G27260 AT1G27270 AT1G27280
fragaria_vesca	FvH4_3g01921 FvH4_3g01930 FvH4_5g11770 FvH4_5g22630
malus_domestica	MD08G1247800.v1.1
pyrus_communis	pycom08g21470 pycom15g39040
rosa_chinensis	RchiOBHm_Chr5g0002831 RchiOBHm_Chr5g0002841
rosa_laevigata	RLG00000003026 RLG00000003029 RLG00000031063 RLG00000031064
rosa_multiflora	Rmu_co8115592.1_g000001 Rmu_co8158784.1_g000001 Rmu_sc0012670.1_g000008 Rmu_sc0012670.1_g000009 Rmu_sc0013603.1_g000011 Rmu_sc0013603.1_g000012
rosa_roxburghii	Rroxscaffold_1G00073010 Rroxscaffold_1G00073020 Rroxscaffold_3G00248150
rosa_rugosa	Rorug04G0400000 Rorug04G0400100
rosa_samantha	Rh5AG022900 Rh5BG025500 Rh5BG025600 Rh5CG025400 Rh5CG025500 Rh5DG024000 Rh5DG024100 Rh7AG255700 Rh7AG256500 Rh7BG250100 Rh7CG272100 Rh7CG272900 Rh7CG273000 Rh7DG262900
rosa_wichuraiana	Rw5G002120 Rw5G002140 Rw7G021870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	3 cut(s)	47, 100, 375
AcuI	CTGAAG	2 cut(s)	254, 595
AfiI	CCNNNNNNNGG	1 cut(s)	531
AflIII	ACRYGT	1 cut(s)	341
AgsI	TTSAA	8 cut(s)	19, 27, 246, 287, 380, 418, 451, 514
AjuI	GAANNNNNNNTTGG	2 cut(s)	111, 143
AluBI	AGCT	2 cut(s)	274, 402
AluI	AGCT	2 cut(s)	274, 402
Alw26I	GTCTC	2 cut(s)	151, 483
ApeKI	GCWGC	3 cut(s)	64, 208, 274
ApoI	RAATTY	3 cut(s)	47, 100, 375
AspS9I	GGNCC	1 cut(s)	522
AsuHPI	GGTGA	1 cut(s)	43
AsuII	TTCGAA	1 cut(s)	347
AvaII	GGWCC	1 cut(s)	522
BanII	GRGCYC	1 cut(s)	633
BbvI	GCAGC	3 cut(s)	76, 195, 261
BcoDI	GTCTC	2 cut(s)	151, 483
BisI	GCNGC	3 cut(s)	65, 209, 275
BlsI	GCNGC	3 cut(s)	66, 210, 276
Bme18I	GGWCC	1 cut(s)	522
BmgT120I	GGNCC	1 cut(s)	522
BmsI	GCATC	2 cut(s)	269, 445
Bpu14I	TTCGAA	1 cut(s)	347
BpuEI	CTTGAG	2 cut(s)	221, 617
BsaXI	ACNNNNNCTCC	2 cut(s)	150, 180
Bsc4I	CCNNNNNNNGG	1 cut(s)	531
Bse3DI	GCAATG	1 cut(s)	223
BseLI	CCNNNNNNNGG	1 cut(s)	531
BseMI	GCAATG	1 cut(s)	223
BseMII	CTCAG	1 cut(s)	466
BseXI	GCAGC	3 cut(s)	76, 195, 261
BslI	CCNNNNNNNGG	1 cut(s)	531
BsmAI	GTCTC	2 cut(s)	151, 483
Bsp119I	TTCGAA	1 cut(s)	347
Bsp1286I	GDGCHC	1 cut(s)	633
Bsp143I	GATC	3 cut(s)	78, 249, 453
BspCNI	CTCAG	1 cut(s)	467
BspQI	GCTCTTC	1 cut(s)	557
BspT104I	TTCGAA	1 cut(s)	347
BsrDI	GCAATG	1 cut(s)	223
BssMI	GATC	3 cut(s)	78, 249, 453
Bst4CI	ACNGT	3 cut(s)	154, 465, 494
Bst6I	CTCTTC	2 cut(s)	557, 584
BstBI	TTCGAA	1 cut(s)	347
BstDEI	CTNAG	1 cut(s)	475
BstKTI	GATC	3 cut(s)	81, 252, 456
BstMAI	GTCTC	2 cut(s)	151, 483
BstMBI	GATC	3 cut(s)	78, 249, 453
BstMWI	GCNNNNNNNGC	1 cut(s)	547
BstNSI	RCATGY	1 cut(s)	345
BstV1I	GCAGC	3 cut(s)	76, 195, 261
BtsIMutI	CAGTG	1 cut(s)	334
Cfr13I	GGNCC	1 cut(s)	522
CspCI	CAANNNNNGTGG	2 cut(s)	574, 609
CviAII	CATG	2 cut(s)	178, 342
CviJI	RGCY	7 cut(s)	274, 305, 320, 402, 510, 550, 631
CviKI_1	RGCY	7 cut(s)	274, 305, 320, 402, 510, 550, 631
DdeI	CTNAG	1 cut(s)	475
DpnI	GATC	3 cut(s)	80, 251, 455
DpnII	GATC	3 cut(s)	78, 249, 453
Eam1104I	CTCTTC	2 cut(s)	557, 584
EarI	CTCTTC	2 cut(s)	557, 584
Eco24I	GRGCYC	1 cut(s)	633
Eco47I	GGWCC	1 cut(s)	522
Eco57I	CTGAAG	2 cut(s)	254, 595
EcoRI	GAATTC	2 cut(s)	100, 375
EcoT38I	GRGCYC	1 cut(s)	633
FaeI	CATG	2 cut(s)	181, 345
FaiI	YATR	7 cut(s)	179, 343, 358, 497, 562, 639, 641
FalI	AAGNNNNNCTT	2 cut(s)	111, 143
FatI	CATG	2 cut(s)	177, 341
Fnu4HI	GCNGC	3 cut(s)	65, 209, 275
FriOI	GRGCYC	1 cut(s)	633
Fsp4HI	GCNGC	3 cut(s)	65, 209, 275
GluI	GCNGC	3 cut(s)	65, 209, 275
Hin1II	CATG	2 cut(s)	181, 345
HinfI	GANTC	3 cut(s)	201, 232, 254
HphI	GGTGA	1 cut(s)	43
Hpy166II	GTNNAC	3 cut(s)	124, 502, 522
Hpy188I	TCNGA	5 cut(s)	76, 87, 476, 571, 612
Hpy188III	TCNNGA	4 cut(s)	24, 44, 287, 448
Hpy8I	GTNNAC	3 cut(s)	124, 502, 522
HpyAV	CCTTC	2 cut(s)	137, 278
HpyCH4III	ACNGT	3 cut(s)	154, 465, 494
HpyCH4V	TGCA	5 cut(s)	64, 164, 260, 436, 482
HpyF10VI	GCNNNNNNNGC	1 cut(s)	547
HpyF3I	CTNAG	1 cut(s)	475
Hsp92II	CATG	2 cut(s)	181, 345
Kzo9I	GATC	3 cut(s)	78, 249, 453
LguI	GCTCTTC	1 cut(s)	557
LpnPI	CCDG	7 cut(s)	57, 144, 200, 218, 294, 538, 569
Lsp1109I	GCAGC	3 cut(s)	76, 195, 261
LweI	GCATC	2 cut(s)	269, 445
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	3 cut(s)	80, 251, 455
MboI	GATC	3 cut(s)	78, 249, 453
MboII	GAAGA	6 cut(s)	106, 230, 423, 463, 544, 601
MhlI	GDGCHC	1 cut(s)	633
MluCI	AATT	5 cut(s)	47, 100, 375, 440, 544
MlyI	GAGTC	1 cut(s)	263
MmeI	TCCRAC	1 cut(s)	594
MnlI	CCTC	5 cut(s)	154, 183, 283, 470, 524
MseI	TTAA	2 cut(s)	364, 653
MspA1I	CMGCKG	1 cut(s)	274
MwoI	GCNNNNNNNGC	1 cut(s)	547
NdeII	GATC	3 cut(s)	78, 249, 453
NlaIII	CATG	2 cut(s)	181, 345
NspI	RCATGY	1 cut(s)	345
NspV	TTCGAA	1 cut(s)	347
PciI	ACATGT	1 cut(s)	341
PciSI	GCTCTTC	1 cut(s)	557
PfeI	GAWTC	2 cut(s)	201, 232
PkrI	GCNGC	3 cut(s)	66, 210, 276
PleI	GAGTC	1 cut(s)	262
PpsI	GAGTC	1 cut(s)	262
PscI	ACATGT	1 cut(s)	341
PspPI	GGNCC	1 cut(s)	522
PsrI	GAACNNNNNNTAC	2 cut(s)	389, 421
PvuII	CAGCTG	1 cut(s)	274
SapI	GCTCTTC	1 cut(s)	557
SaqAI	TTAA	2 cut(s)	364, 653
SatI	GCNGC	3 cut(s)	65, 209, 275
Sau3AI	GATC	3 cut(s)	78, 249, 453
Sau96I	GGNCC	1 cut(s)	522
SchI	GAGTC	1 cut(s)	263
SduI	GDGCHC	1 cut(s)	633
SetI	ASST	9 cut(s)	33, 62, 129, 146, 276, 404, 481, 527, 653
SfaNI	GCATC	2 cut(s)	269, 445
SfuI	TTCGAA	1 cut(s)	347
SinI	GGWCC	1 cut(s)	522
SmlI	CTYRAG	2 cut(s)	236, 632
SmoI	CTYRAG	2 cut(s)	236, 632
Sse9I	AATT	5 cut(s)	47, 100, 375, 440, 544
TaaI	ACNGT	3 cut(s)	154, 465, 494
TaqI	TCGA	2 cut(s)	252, 347
TasI	AATT	5 cut(s)	47, 100, 375, 440, 544
TfiI	GAWTC	2 cut(s)	201, 232
Tru1I	TTAA	2 cut(s)	364, 653
Tru9I	TTAA	2 cut(s)	364, 653
TscAI	CASTG	1 cut(s)	334
TseI	GCWGC	3 cut(s)	64, 208, 274
TspDTI	ATGAA	1 cut(s)	113
TspRI	CASTG	1 cut(s)	334
VpaK11BI	GGWCC	1 cut(s)	522
XapI	RAATTY	3 cut(s)	47, 100, 375
XceI	RCATGY	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.