Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001478

Physical Location & Seq

Genomic Coordinates Reverse (-)

13994363 .. 13995433

Gene Structure 1071 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g22630.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGTTCCGCGACCGGTCTCGTCTCGAGAAGAAGAAGAAGAAGAAGAGCTTTCTGGGACGTCCAAGATGATCAATAAGACAACAGAAGGAGGTATCAGAAAACCTAGTAGAAGTCAATACTTCGCATATCTAAAGGCAGTGAGGGATGTTCTTGAAGACGAAGAAAGAAGCTACCAAGACTTCACTCAACTGCTGAAAGACTTTAGAACTCAAAGACTCGACATTGAAAGTCTGATAGAGATGGTAAAAGTTTTTTTTGAAGGGCATCCAGATTTACTATTGGGTTTCAACACCTTCTTGCCAGAGGGATATGAAATCGCCATCACACCCACTACTCATGATCTCGTCTCTGAAGAAGCTTTCACTTTCGTGAAAAGGGTAAAGGCACGATTTCGAGACGAACCTCATGTTTATTTATCTTTTATTGAAATCTTAAAGAATGAAAACAAGCACAGTATTTTCCCAAAGGTTGCAGCACTTTTCCGAGATCACCCAGACTTGATTGATGATTTCACTCACTTTTTGCCAAGTGAACCCTCTTGTGCTATTGACCTCTCTAACTGTGAGACTTGCACTCCAAGTTACCATGTCTTGCCAGAGGATTACTCGATTCCTATTGCCACCCGAAGAACATTGCTTGATTCTCAAGTACTAAATGATCGAGTCTGCATCACTCCTTCAGCTGCATCCTGTTCAAGAGGAATACGCAAAACCCGATGTGAGCAGAGCCTATTCCAGTGTGAGAATGACATGTTCGAACTTGATATGCTGTTGAGTTCTGTGAATTCAACGATAGGGAATGTTGAGCAGCTACTAGAGAAGATTGAAAACAATAGTATTAGTGCATCAATTTGTCTTGAAGATCACTTGACGGTTCATAATCTGAGGTGTATTGAGAGAATATATAGTAAACAAGGGCTTGAAGTGGTGGATGTGTTGAGGGAAAATGCGGAAGTGGCTTTGCCTGTTATATTAGTTAGACTGAAGCAAAAGCAGGAAGAGTGGGAACAATGTCGGTCCGATTTTAGTCAAGTTTGGGGTCAGGTATATGCGAAGAATATTAACAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000785 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0098732 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

357

Amino Acids

41.02

Weight (kDa)

4.98

Isoelectric Point (pI)

58.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAH	PF02671	57 - 100	1.9e-14	Paired amphipathic helix repeat
PAH	PF02671	136 - 175	2.3e-07	Paired amphipathic helix repeat
Sin3_corepress	PF08295	190 - 279	3.1e-20	Sin3 family co-repressor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23810 AT1G24210 AT1G24220 AT1G24220 AT1G24230 AT1G24250 AT1G27240 AT1G27260 AT1G27270 AT1G27280
fragaria_vesca	FvH4_3g01921 FvH4_3g01930 FvH4_5g11770 FvH4_5g22630
malus_domestica	MD08G1247800.v1.1
pyrus_communis	pycom08g21470 pycom15g39040
rosa_chinensis	RchiOBHm_Chr5g0002831 RchiOBHm_Chr5g0002841
rosa_laevigata	RLG00000003026 RLG00000003029 RLG00000031063 RLG00000031064
rosa_multiflora	Rmu_co8115592.1_g000001 Rmu_co8158784.1_g000001 Rmu_sc0012670.1_g000008 Rmu_sc0012670.1_g000009 Rmu_sc0013603.1_g000011 Rmu_sc0013603.1_g000012
rosa_roxburghii	Rroxscaffold_1G00073010 Rroxscaffold_1G00073020 Rroxscaffold_3G00248150
rosa_rugosa	Rorug04G0400000 Rorug04G0400100
rosa_samantha	Rh5AG022900 Rh5BG025500 Rh5BG025600 Rh5CG025400 Rh5CG025500 Rh5DG024000 Rh5DG024100 Rh7AG255700 Rh7AG256500 Rh7BG250100 Rh7CG272100 Rh7CG272900 Rh7CG273000 Rh7DG262900
rosa_wichuraiana	Rw5G002120 Rw5G002140 Rw7G021870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	62
AccII	CGCG	1 cut(s)	10
AciI	CCGC	2 cut(s)	8, 950
AcsI	RAATTY	1 cut(s)	784
AcuI	CTGAAG	3 cut(s)	372, 663, 1004
AcyI	GRCGYC	1 cut(s)	59
AfaI	GTAC	1 cut(s)	651
AflIII	ACRYGT	1 cut(s)	750
AgeI	ACCGGT	1 cut(s)	13
AleI	CACNNNNGTG	1 cut(s)	368
AluBI	AGCT	5 cut(s)	49, 171, 359, 683, 811
AluI	AGCT	5 cut(s)	49, 171, 359, 683, 811
Alw26I	GTCTC	5 cut(s)	22, 27, 352, 390, 560
Ama87I	CYCGRG	1 cut(s)	24
ApeKI	GCWGC	3 cut(s)	473, 683, 808
ApoI	RAATTY	1 cut(s)	784
AsiGI	ACCGGT	1 cut(s)	13
AspS9I	GGNCC	1 cut(s)	1017
AsuHPI	GGTGA	1 cut(s)	482
AsuII	TTCGAA	1 cut(s)	756
AvaI	CYCGRG	1 cut(s)	24
AvaII	GGWCC	1 cut(s)	1017
BbsI	GAAGAC	1 cut(s)	162
BbvI	GCAGC	3 cut(s)	485, 670, 820
BccI	CCATC	2 cut(s)	235, 329
BclI	TGATCA	1 cut(s)	69
BcoDI	GTCTC	5 cut(s)	22, 27, 352, 390, 560
BfaI	CTAG	2 cut(s)	105, 815
BisI	GCNGC	3 cut(s)	474, 684, 809
BlsI	GCNGC	3 cut(s)	475, 685, 810
BmcAI	AGTACT	1 cut(s)	651
Bme18I	GGWCC	1 cut(s)	1017
BmeT110I	CYCGRG	1 cut(s)	24
BmgT120I	GGNCC	1 cut(s)	1017
BmiI	GGNNCC	1 cut(s)	6
BmsI	GCATC	4 cut(s)	274, 678, 695, 854
BpiI	GAAGAC	1 cut(s)	162
BplI	GAGNNNNNCTC	2 cut(s)	590, 622
Bpu14I	TTCGAA	1 cut(s)	756
BpuEI	CTTGAG	1 cut(s)	630
BsaHI	GRCGYC	1 cut(s)	59
BsaI	GGTCTC	1 cut(s)	22
BsaWI	WCCGGW	1 cut(s)	13
BsaXI	ACNNNNNCTCC	2 cut(s)	559, 589
Bse118I	RCCGGY	1 cut(s)	13
Bse1I	ACTGG	1 cut(s)	736
Bse3DI	GCAATG	1 cut(s)	632
BseGI	GGATG	4 cut(s)	151, 265, 686, 937
BseMI	GCAATG	1 cut(s)	632
BseMII	CTCAG	1 cut(s)	875
BseNI	ACTGG	1 cut(s)	736
BseXI	GCAGC	3 cut(s)	485, 670, 820
Bsh1236I	CGCG	1 cut(s)	10
Bsh1285I	CGRYCG	1 cut(s)	14
BshTI	ACCGGT	1 cut(s)	13
BsiEI	CGRYCG	1 cut(s)	14
BsiHKCI	CYCGRG	1 cut(s)	24
BsiSI	CCGG	1 cut(s)	14
BslFI	GGGAC	1 cut(s)	70
BsmAI	GTCTC	5 cut(s)	22, 27, 352, 390, 560
BsmBI	CGTCTC	3 cut(s)	27, 352, 390
BsmFI	GGGAC	1 cut(s)	70
Bso31I	GGTCTC	1 cut(s)	22
BsoBI	CYCGRG	1 cut(s)	24
Bsp119I	TTCGAA	1 cut(s)	756
Bsp143I	GATC	5 cut(s)	69, 340, 487, 658, 862
BspACI	CCGC	2 cut(s)	8, 950
BspCNI	CTCAG	1 cut(s)	876
BspFNI	CGCG	1 cut(s)	10
BspHI	TCATGA	1 cut(s)	337
BspLI	GGNNCC	1 cut(s)	6
BspQI	GCTCTTC	1 cut(s)	39
BspT104I	TTCGAA	1 cut(s)	756
BspTNI	GGTCTC	1 cut(s)	22
BsrDI	GCAATG	1 cut(s)	632
BsrFI	RCCGGY	1 cut(s)	13
BsrI	ACTGG	1 cut(s)	736
BssAI	RCCGGY	1 cut(s)	13
BssMI	GATC	5 cut(s)	69, 340, 487, 658, 862
BssNI	GRCGYC	1 cut(s)	59
Bst4CI	ACNGT	3 cut(s)	455, 563, 874
Bst6I	CTCTTC	2 cut(s)	39, 993
BstACI	GRCGYC	1 cut(s)	59
BstBI	TTCGAA	1 cut(s)	756
BstDEI	CTNAG	1 cut(s)	884
BstF5I	GGATG	4 cut(s)	151, 265, 686, 937
BstFNI	CGCG	1 cut(s)	10
BstKTI	GATC	5 cut(s)	72, 343, 490, 661, 865
BstMAI	GTCTC	5 cut(s)	22, 27, 352, 390, 560
BstMBI	GATC	5 cut(s)	69, 340, 487, 658, 862
BstMCI	CGRYCG	1 cut(s)	14
BstMWI	GCNNNNNNNGC	1 cut(s)	956
BstNSI	RCATGY	1 cut(s)	754
BstUI	CGCG	1 cut(s)	10
BstV1I	GCAGC	3 cut(s)	485, 670, 820
BstV2I	GAAGAC	1 cut(s)	162
BtsCI	GGATG	4 cut(s)	151, 265, 686, 937
BtsI	GCAGTG	1 cut(s)	144
BtsIMutI	CAGTG	2 cut(s)	144, 743
CciI	TCATGA	1 cut(s)	337
Cfr10I	RCCGGY	1 cut(s)	13
Cfr13I	GGNCC	1 cut(s)	1017
CpoI	CGGWCCG	1 cut(s)	1017
Csp6I	GTAC	1 cut(s)	650
CspAI	ACCGGT	1 cut(s)	13
CspI	CGGWCCG	1 cut(s)	1017
CviAII	CATG	4 cut(s)	338, 407, 587, 751
CviJI	RGCY	8 cut(s)	49, 171, 359, 683, 729, 811, 919, 959
CviKI_1	RGCY	8 cut(s)	49, 171, 359, 683, 729, 811, 919, 959
CviQI	GTAC	1 cut(s)	650
DdeI	CTNAG	1 cut(s)	884
DpnI	GATC	5 cut(s)	71, 342, 489, 660, 864
DpnII	GATC	5 cut(s)	69, 340, 487, 658, 862
Eam1104I	CTCTTC	2 cut(s)	39, 993
EarI	CTCTTC	2 cut(s)	39, 993
Eco31I	GGTCTC	1 cut(s)	22
Eco47I	GGWCC	1 cut(s)	1017
Eco57I	CTGAAG	3 cut(s)	372, 663, 1004
Eco88I	CYCGRG	1 cut(s)	24
EcoRI	GAATTC	1 cut(s)	784
Esp3I	CGTCTC	3 cut(s)	27, 352, 390
FaeI	CATG	4 cut(s)	341, 410, 590, 754
FalI	AAGNNNNNCTT	2 cut(s)	33, 65
FaqI	GGGAC	1 cut(s)	70
FatI	CATG	4 cut(s)	337, 406, 586, 750
FbaI	TGATCA	1 cut(s)	69
Fnu4HI	GCNGC	3 cut(s)	474, 684, 809
FokI	GGATG	4 cut(s)	158, 252, 673, 944
Fsp4HI	GCNGC	3 cut(s)	474, 684, 809
FspBI	CTAG	2 cut(s)	105, 815
GluI	GCNGC	3 cut(s)	474, 684, 809
HapII	CCGG	1 cut(s)	14
Hin1I	GRCGYC	1 cut(s)	59
Hin1II	CATG	4 cut(s)	341, 410, 590, 754
HindIII	AAGCTT	1 cut(s)	357
HinfI	GANTC	4 cut(s)	216, 610, 641, 663
HpaII	CCGG	1 cut(s)	14
HphI	GGTGA	1 cut(s)	482
Hpy166II	GTNNAC	2 cut(s)	533, 911
Hpy188I	TCNGA	6 cut(s)	98, 234, 352, 485, 885, 1021
Hpy188III	TCNNGA	9 cut(s)	24, 26, 152, 269, 338, 370, 395, 696, 857
Hpy8I	GTNNAC	2 cut(s)	533, 911
HpyAV	CCTTC	4 cut(s)	80, 254, 304, 687
HpyCH4III	ACNGT	3 cut(s)	455, 563, 874
HpyCH4IV	ACGT	1 cut(s)	59
HpyCH4V	TGCA	5 cut(s)	473, 573, 669, 686, 845
HpyF10VI	GCNNNNNNNGC	1 cut(s)	956
HpyF3I	CTNAG	1 cut(s)	884
HpySE526I	ACGT	1 cut(s)	59
Hsp92I	GRCGYC	1 cut(s)	59
Hsp92II	CATG	4 cut(s)	341, 410, 590, 754
Ksp22I	TGATCA	1 cut(s)	69
Kzo9I	GATC	5 cut(s)	69, 340, 487, 658, 862
LguI	GCTCTTC	1 cut(s)	39
Lsp1109I	GCAGC	3 cut(s)	485, 670, 820
LweI	GCATC	4 cut(s)	274, 678, 695, 854
MaeI	CTAG	2 cut(s)	105, 815
MaeII	ACGT	1 cut(s)	59
MaeIII	GTNAC	1 cut(s)	581
MalI	GATC	5 cut(s)	71, 342, 489, 660, 864
MboI	GATC	5 cut(s)	69, 340, 487, 658, 862
MluCI	AATT	3 cut(s)	784, 849, 1066
MlyI	GAGTC	2 cut(s)	210, 672
MseI	TTAA	3 cut(s)	434, 1062, 1069
MslI	CAYNNNNRTG	1 cut(s)	368
MspA1I	CMGCKG	1 cut(s)	683
MspI	CCGG	1 cut(s)	14
MvnI	CGCG	1 cut(s)	10
MwoI	GCNNNNNNNGC	1 cut(s)	956
NdeII	GATC	5 cut(s)	69, 340, 487, 658, 862
NlaIII	CATG	4 cut(s)	341, 410, 590, 754
NlaIV	GGNNCC	1 cut(s)	6
NspI	RCATGY	1 cut(s)	754
NspV	TTCGAA	1 cut(s)	756
OliI	CACNNNNGTG	1 cut(s)	368
PaeR7I	CTCGAG	1 cut(s)	24
PagI	TCATGA	1 cut(s)	337
PciI	ACATGT	1 cut(s)	750
PciSI	GCTCTTC	1 cut(s)	39
PcsI	WCGNNNNNNNCGW	1 cut(s)	712
PfeI	GAWTC	2 cut(s)	610, 641
PinAI	ACCGGT	1 cut(s)	13
PkrI	GCNGC	3 cut(s)	475, 685, 810
PleI	GAGTC	2 cut(s)	210, 671
PpsI	GAGTC	2 cut(s)	210, 671
PscI	ACATGT	1 cut(s)	750
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	1017
PvuII	CAGCTG	1 cut(s)	683
RsaI	GTAC	1 cut(s)	651
RsaNI	GTAC	1 cut(s)	650
RseI	CAYNNNNRTG	1 cut(s)	368
Rsr2I	CGGWCCG	1 cut(s)	1017
RsrII	CGGWCCG	1 cut(s)	1017
SapI	GCTCTTC	1 cut(s)	39
SaqAI	TTAA	3 cut(s)	434, 1062, 1069
SatI	GCNGC	3 cut(s)	474, 684, 809
Sau3AI	GATC	5 cut(s)	69, 340, 487, 658, 862
Sau96I	GGNCC	1 cut(s)	1017
ScaI	AGTACT	1 cut(s)	651
SchI	GAGTC	2 cut(s)	210, 672
SfaNI	GCATC	4 cut(s)	274, 678, 695, 854
Sfr274I	CTCGAG	1 cut(s)	24
SfuI	TTCGAA	1 cut(s)	756
SinI	GGWCC	1 cut(s)	1017
SlaI	CTCGAG	1 cut(s)	24
SmiMI	CAYNNNNRTG	1 cut(s)	368
SmlI	CTYRAG	2 cut(s)	24, 645
SmoI	CTYRAG	2 cut(s)	24, 645
Sse9I	AATT	3 cut(s)	784, 849, 1066
SsiI	CCGC	2 cut(s)	8, 950
SspI	AATATT	1 cut(s)	1060
SspMI	CTAG	2 cut(s)	105, 815
TaaI	ACNGT	3 cut(s)	455, 563, 874
TaiI	ACGT	1 cut(s)	62
TaqI	TCGA	6 cut(s)	25, 219, 394, 608, 661, 756
TaqII	GACCGA	1 cut(s)	1005
TasI	AATT	3 cut(s)	784, 849, 1066
TatI	WGTACW	1 cut(s)	649
TfiI	GAWTC	2 cut(s)	610, 641
Tru1I	TTAA	3 cut(s)	434, 1062, 1069
Tru9I	TTAA	3 cut(s)	434, 1062, 1069
TscAI	CASTG	2 cut(s)	144, 743
TseI	GCWGC	3 cut(s)	473, 683, 808
TspDTI	ATGAA	3 cut(s)	327, 456, 866
TspRI	CASTG	2 cut(s)	144, 743
VpaK11BI	GGWCC	1 cut(s)	1017
XapI	RAATTY	1 cut(s)	784
XceI	RCATGY	1 cut(s)	754
XhoI	CTCGAG	1 cut(s)	24
XspI	CTAG	2 cut(s)	105, 815
ZraI	GACGTC	1 cut(s)	60
ZrmI	AGTACT	1 cut(s)	651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.